Wall clock time and date at job start Tue Mar 31 2020 05:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47215 * 2 1 4 4 C 1.36931 * 119.99932 * 263.77202 * 3 2 1 5 5 H 1.08002 * 120.00404 * 187.04909 * 4 3 2 6 6 C 1.38813 * 120.00259 * 7.05257 * 4 3 2 7 7 N 1.31623 * 119.99752 * 25.41160 * 6 4 3 8 8 Si 1.86804 * 120.00304 * 205.42188 * 6 4 3 9 9 H 1.48498 * 109.47062 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47453 * 119.99644 * 8 6 4 11 11 H 1.48498 * 109.46987 * 239.99734 * 8 6 4 12 12 C 1.46498 * 120.00122 * 83.77340 * 3 2 1 13 13 C 1.50703 * 109.47143 * 84.71647 * 12 3 2 14 14 C 1.38246 * 119.95644 * 259.96860 * 13 12 3 15 15 C 1.38208 * 120.18147 * 179.97438 * 14 13 12 16 16 C 1.38693 * 120.08687 * 0.02614 * 15 14 13 17 17 O 1.35999 * 120.04394 * 179.97438 * 16 15 14 18 18 C 1.42898 * 116.99990 * 0.02562 * 17 16 15 19 19 C 1.38958 * 119.91078 * 359.97438 * 16 15 14 20 20 O 1.36092 * 120.09149 * 180.02562 * 19 16 15 21 21 C 1.42893 * 116.99832 * 89.99872 * 20 19 16 22 22 C 1.38647 * 119.95416 * 79.69354 * 13 12 3 23 23 O 1.36000 * 120.04521 * 0.02562 * 22 13 12 24 24 H 1.09004 * 109.46804 * 56.55911 * 1 2 3 25 25 H 1.08996 * 109.47179 * 176.56004 * 1 2 3 26 26 H 1.09002 * 109.46855 * 296.56530 * 1 2 3 27 27 H 1.08994 * 109.47016 * 239.99595 * 2 1 3 28 28 H 1.09002 * 109.46709 * 119.99658 * 2 1 3 29 29 H 0.97004 * 119.99683 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47157 * 324.71926 * 12 3 2 31 31 H 1.08993 * 109.47483 * 204.71716 * 12 3 2 32 32 H 1.08006 * 119.91098 * 359.97438 * 14 13 12 33 33 H 1.07998 * 119.95985 * 180.02562 * 15 14 13 34 34 H 1.09001 * 109.47268 * 59.99449 * 18 17 16 35 35 H 1.08999 * 109.47315 * 179.97438 * 18 17 16 36 36 H 1.09005 * 109.47080 * 299.99737 * 18 17 16 37 37 H 1.09001 * 109.47268 * 300.00110 * 21 20 19 38 38 H 1.08997 * 109.47361 * 60.00297 * 21 20 19 39 39 H 1.08998 * 109.47330 * 180.02562 * 21 20 19 40 40 H 0.96692 * 113.99616 * 90.00017 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3679 1.9838 -1.1789 5 1 2.8338 2.9581 -1.1700 6 6 2.1233 1.3425 -2.3854 7 7 1.1585 0.4516 -2.4734 8 14 3.1637 1.7436 -3.8842 9 1 4.1741 2.7709 -3.5248 10 1 3.8523 0.5140 -4.3524 11 1 2.2916 2.2653 -4.9669 12 6 2.1328 2.1177 1.2612 13 6 3.4536 1.7969 1.9122 14 6 3.5104 0.8753 2.9410 15 6 4.7193 0.5772 3.5409 16 6 5.8808 1.2027 3.1129 17 8 7.0698 0.9091 3.7043 18 6 7.0491 -0.0536 4.7600 19 6 5.8280 2.1297 2.0791 20 8 6.9656 2.7452 1.6559 21 6 7.6977 2.1061 0.6083 22 6 4.6111 2.4224 1.4746 23 8 4.5550 3.3251 0.4590 24 1 -0.3633 0.5664 -0.8576 25 1 -0.3633 -1.0258 -0.0617 26 1 -0.3633 0.4596 0.9192 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 0.9878 0.0032 -3.3165 30 1 1.3198 1.8272 1.9266 31 1 2.0757 3.1880 1.0635 32 1 2.6076 0.3868 3.2769 33 1 4.7595 -0.1437 4.3441 34 1 6.6690 -1.0018 4.3798 35 1 8.0598 -0.1950 5.1428 36 1 6.4025 0.3012 5.5627 37 1 8.0061 1.1127 0.9342 38 1 7.0659 2.0187 -0.2756 39 1 8.5799 2.6992 0.3674 40 1 4.4088 4.2356 0.7498 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891779316.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:10 Heat of formation + Delta-G solvation = -54.295074 kcal Electronic energy + Delta-G solvation = -23207.822555 eV Core-core repulsion = 19797.393751 eV Total energy + Delta-G solvation = -3410.428804 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.37024 -38.36054 -37.36595 -35.87311 -35.32361 -31.62074 -30.19358 -29.56619 -28.51186 -27.40638 -26.43247 -25.11714 -23.18696 -22.02917 -21.30724 -19.89313 -18.49874 -17.13147 -16.90036 -16.37624 -16.28802 -15.83419 -15.05626 -14.90879 -14.54923 -14.05621 -13.90092 -13.69386 -13.51400 -13.28812 -12.47113 -12.23521 -12.00535 -11.86444 -11.66141 -11.37593 -11.28014 -11.22932 -10.79014 -10.63235 -10.57013 -10.47988 -10.27203 -9.90799 -9.63006 -9.45548 -9.29132 -8.25597 -8.22216 -7.74504 -6.81662 -5.66440 -2.92729 1.42102 1.65874 3.28568 3.46573 3.56038 3.60817 3.67335 4.24448 4.64307 4.76208 4.97171 5.10855 5.16487 5.30782 5.38734 5.43228 5.58052 5.62566 5.66402 5.71299 5.78332 5.84387 5.96357 6.25715 6.44461 6.51951 6.58253 6.65885 6.87851 6.92833 6.97999 7.07388 7.17998 7.30958 7.79823 7.81985 7.88836 8.14908 8.23640 8.46169 9.35417 9.97504 10.40921 11.38913 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018069 B = 0.006331 C = 0.005229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.262951 B = 4421.542725 C = 5353.372547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.162 3.838 3 N -0.585 5.585 4 C -0.228 4.228 5 H 0.083 0.917 6 C -0.010 4.010 7 N -0.901 5.901 8 Si 0.888 3.112 9 H -0.278 1.278 10 H -0.293 1.293 11 H -0.296 1.296 12 C 0.194 3.806 13 C -0.132 4.132 14 C -0.068 4.068 15 C -0.211 4.211 16 C 0.106 3.894 17 O -0.312 6.312 18 C 0.028 3.972 19 C 0.027 3.973 20 O -0.324 6.324 21 C 0.039 3.961 22 C 0.151 3.849 23 O -0.466 6.466 24 H 0.085 0.915 25 H 0.021 0.979 26 H 0.008 0.992 27 H 0.091 0.909 28 H 0.000 1.000 29 H 0.248 0.752 30 H 0.044 0.956 31 H 0.058 0.942 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.053 0.947 35 H 0.095 0.905 36 H 0.053 0.947 37 H 0.039 0.961 38 H 0.051 0.949 39 H 0.086 0.914 40 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.094 0.442 13.142 15.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.037 3.963 3 N -0.304 5.304 4 C -0.356 4.356 5 H 0.101 0.899 6 C -0.205 4.205 7 N -0.549 5.549 8 Si 0.719 3.281 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.224 1.224 12 C 0.066 3.934 13 C -0.136 4.136 14 C -0.087 4.087 15 C -0.230 4.230 16 C 0.060 3.940 17 O -0.225 6.225 18 C -0.068 4.068 19 C -0.018 4.018 20 O -0.240 6.240 21 C -0.056 4.056 22 C 0.105 3.895 23 O -0.275 6.275 24 H 0.103 0.897 25 H 0.040 0.960 26 H 0.027 0.973 27 H 0.109 0.891 28 H 0.018 0.982 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.072 0.928 35 H 0.114 0.886 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.105 0.895 40 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 8.389 0.113 12.619 15.154 hybrid contribution 0.382 -0.063 -0.528 0.655 sum 8.771 0.050 12.091 14.938 Atomic orbital electron populations 1.22200 0.99317 0.98638 1.00078 1.20850 0.92268 0.84741 0.98395 1.44138 1.74606 1.10753 1.00933 1.19467 1.30855 1.02244 0.83069 0.89879 1.24664 0.98555 1.00100 0.97188 1.70201 1.28548 1.31524 1.24577 0.86404 0.81011 0.77437 0.83289 1.20311 1.22057 1.22366 1.19517 0.89381 0.96413 0.88050 1.21453 0.98616 0.98144 0.95427 1.20766 0.96927 0.96056 0.94919 1.21057 0.92294 1.04830 1.04786 1.19129 0.85078 0.95090 0.94725 1.86116 1.28389 1.58874 1.49122 1.23013 1.03413 0.91308 0.89018 1.18380 0.87024 0.99427 0.96924 1.86000 1.35254 1.48353 1.54437 1.22931 0.95561 0.97406 0.89655 1.18274 0.90203 0.93635 0.87422 1.85007 1.94441 1.18924 1.29079 0.89652 0.95984 0.97286 0.89075 0.98211 0.94168 0.93812 0.92381 0.85628 0.85570 0.92847 0.88621 0.92810 0.94179 0.93025 0.89526 0.76311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 9.69 37.16 0.36 -2.92 16 2 C 0.16 3.94 5.62 -4.04 -0.02 3.91 16 3 N -0.58 -14.23 2.52 -174.61 -0.44 -14.67 16 4 C -0.23 -6.12 9.21 -15.06 -0.14 -6.25 16 5 H 0.08 2.22 6.75 -52.49 -0.35 1.87 16 6 C -0.01 -0.26 4.91 -17.43 -0.09 -0.35 16 7 N -0.90 -25.53 8.70 55.49 0.48 -25.04 16 8 Si 0.89 22.29 29.62 -169.99 -5.04 17.25 16 9 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 10 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 11 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 12 C 0.19 3.89 5.48 -5.19 -0.03 3.86 16 13 C -0.13 -2.44 5.47 -104.47 -0.57 -3.01 16 14 C -0.07 -1.09 9.66 -39.59 -0.38 -1.47 16 15 C -0.21 -3.13 9.04 -39.42 -0.36 -3.48 16 16 C 0.11 1.74 6.70 -39.15 -0.26 1.48 16 17 O -0.31 -4.66 10.28 -34.33 -0.35 -5.01 16 18 C 0.03 0.27 9.81 101.05 0.99 1.27 16 19 C 0.03 0.50 5.75 -39.03 -0.22 0.27 16 20 O -0.32 -5.78 9.98 -45.29 -0.45 -6.23 16 21 C 0.04 0.60 11.13 101.05 1.13 1.73 16 22 C 0.15 2.84 6.69 -39.15 -0.26 2.58 16 23 O -0.47 -8.74 10.84 -34.31 -0.37 -9.11 16 24 H 0.08 2.23 6.59 -51.93 -0.34 1.89 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.01 0.17 8.11 -51.93 -0.42 -0.25 16 27 H 0.09 2.51 5.74 -51.93 -0.30 2.21 16 28 H 0.00 -0.01 8.12 -51.93 -0.42 -0.43 16 29 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 30 H 0.04 0.82 7.94 -51.93 -0.41 0.40 16 31 H 0.06 1.13 7.71 -51.93 -0.40 0.73 16 32 H 0.13 1.80 8.03 -52.48 -0.42 1.38 16 33 H 0.13 1.48 6.29 -52.49 -0.33 1.15 16 34 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.46 7.66 -51.93 -0.40 0.07 16 37 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.38 5.28 9.06 45.56 0.41 5.69 16 LS Contribution 331.10 15.07 4.99 4.99 Total: -1.00 -31.90 331.10 -6.07 -37.97 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -5.03 Total: 2.26 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 0.14 Total: -2.40 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.04 Total: -39.72 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -1.18 Total: -20.35 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.04 Total: 17.25 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.90 -6.07 -37.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891779316.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.329 kcal (2) G-P(sol) polarization free energy of solvation -31.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds