Wall clock time and date at job start Tue Mar 31 2020 05:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99850 * 2 1 4 4 C 1.52995 * 109.47042 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47542 * 64.99667 * 4 3 2 6 6 C 1.35772 * 117.00335 * 180.02562 * 5 4 3 7 7 C 1.35127 * 125.84367 * 180.02562 * 6 5 4 8 8 C 1.41443 * 106.79427 * 179.74866 * 7 6 5 9 9 C 1.34439 * 106.89552 * 0.40424 * 8 7 6 10 10 C 1.50702 * 125.74097 * 179.85140 * 9 8 7 11 11 N 1.46503 * 109.46696 * 89.71938 * 10 9 8 12 12 C 1.36933 * 120.00127 * 90.00287 * 11 10 9 13 13 H 1.07997 * 120.00060 * 218.04668 * 12 11 10 14 14 C 1.38815 * 119.99810 * 38.05059 * 12 11 10 15 15 N 1.31617 * 120.00212 * 20.57729 * 14 12 11 16 16 Si 1.86803 * 119.99759 * 200.57495 * 14 12 11 17 17 H 1.48506 * 109.46912 * 89.99831 * 16 14 12 18 18 H 1.48496 * 109.47451 * 209.99812 * 16 14 12 19 19 H 1.48500 * 109.47248 * 330.00210 * 16 14 12 20 20 C 1.46506 * 119.99904 * 269.99491 * 11 10 9 21 21 C 1.52992 * 117.49779 * 193.92124 * 20 11 10 22 22 C 1.53000 * 60.00213 * 252.51418 * 21 20 11 23 23 O 1.34326 * 125.84062 * 0.02694 * 6 5 4 24 24 H 1.08999 * 109.47268 * 59.99368 * 1 2 3 25 25 H 1.08997 * 109.47242 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46698 * 299.99855 * 1 2 3 27 27 H 1.09006 * 109.47285 * 60.00454 * 3 2 1 28 28 H 1.08999 * 109.47623 * 300.00535 * 3 2 1 29 29 H 1.09002 * 109.47056 * 304.99886 * 4 3 2 30 30 H 1.09001 * 109.47588 * 185.00222 * 4 3 2 31 31 H 1.08001 * 126.59695 * 359.97438 * 7 6 5 32 32 H 1.08005 * 126.55580 * 180.29642 * 8 7 6 33 33 H 1.08995 * 109.47019 * 329.71914 * 10 9 8 34 34 H 1.08999 * 109.47234 * 209.71426 * 10 9 8 35 35 H 0.97002 * 119.99575 * 174.97946 * 15 14 12 36 36 H 1.08997 * 115.54816 * 339.63998 * 20 11 10 37 37 H 1.09004 * 117.50348 * 0.02562 * 21 20 11 38 38 H 1.09003 * 117.49545 * 145.02413 * 21 20 11 39 39 H 1.09001 * 117.50003 * 252.51281 * 22 21 20 40 40 H 1.08997 * 117.51451 * 107.48258 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9649 0.5796 -1.2219 6 6 5.3007 0.3979 -1.3835 7 6 5.8995 -0.1533 -2.4621 8 6 7.2910 -0.1392 -2.2088 9 6 7.4612 0.4086 -0.9929 10 6 8.7831 0.6259 -0.3025 11 7 9.3103 1.9448 -0.6613 12 6 8.9937 3.0388 0.0990 13 1 8.8103 3.9914 -0.3755 14 6 8.9084 2.9232 1.4797 15 7 9.5041 1.9235 2.0945 16 14 7.9483 4.1868 2.4652 17 1 6.5352 3.7475 2.5900 18 1 8.5469 4.3187 3.8177 19 1 7.9994 5.4987 1.7712 20 6 10.1766 2.0933 -1.8335 21 6 10.9542 3.4032 -1.9757 22 6 9.7629 3.1174 -2.8923 23 8 6.2531 0.7355 -0.4984 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.6887 1.8464 0.8901 28 1 1.6886 1.8465 -0.8899 29 1 3.8514 0.5682 0.8410 30 1 3.9786 2.1765 0.0890 31 1 5.4101 -0.5288 -3.3486 32 1 8.0682 -0.5010 -2.8657 33 1 9.4875 -0.1446 -0.6158 34 1 8.6423 0.5723 0.7770 35 1 9.5064 1.8823 3.0637 36 1 10.6609 1.1800 -2.1788 37 1 10.8217 4.1544 -1.1971 38 1 11.9506 3.3518 -2.4147 39 1 9.9755 2.8779 -3.9342 40 1 8.8462 3.6804 -2.7169 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891798220.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:50 Heat of formation + Delta-G solvation = -16.541811 kcal Electronic energy + Delta-G solvation = -22331.365401 eV Core-core repulsion = 18922.573701 eV Total energy + Delta-G solvation = -3408.791700 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.83937 -38.62541 -37.39521 -36.98782 -33.65371 -32.40104 -31.25492 -30.48737 -28.26305 -26.51170 -25.15000 -23.60355 -22.70226 -21.36313 -21.10779 -20.03110 -19.73131 -18.20170 -17.01865 -16.56380 -16.00756 -15.73219 -15.57807 -15.51717 -14.50525 -14.29343 -14.10767 -13.93533 -13.71019 -12.86216 -12.83454 -12.34483 -12.15583 -12.03337 -11.83690 -11.68825 -11.50616 -11.13058 -10.91367 -10.89197 -10.82131 -10.59803 -10.26207 -10.06651 -9.89775 -9.70727 -9.36148 -9.10540 -8.53922 -7.20039 -6.61227 -5.94928 -3.50843 2.55685 3.01186 3.27820 3.34309 3.35952 3.38197 3.56028 3.81579 4.36152 4.78833 4.94053 4.98371 5.10787 5.15278 5.22609 5.24392 5.28241 5.38947 5.48410 5.58473 5.69087 5.85795 5.88667 6.10384 6.19389 6.26127 6.38067 6.49223 6.56826 6.59535 6.70734 6.92323 6.97274 7.16605 7.17358 7.36395 7.54339 7.73647 8.02964 8.40684 9.02119 9.64547 10.20371 11.07436 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015814 B = 0.005277 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.173098 B = 5304.281784 C = 6427.924743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.065 3.935 4 C 0.057 3.943 5 O -0.267 6.267 6 C 0.151 3.849 7 C -0.231 4.231 8 C -0.214 4.214 9 C 0.012 3.988 10 C 0.212 3.788 11 N -0.538 5.538 12 C -0.264 4.264 13 H 0.063 0.937 14 C 0.021 3.979 15 N -0.885 5.885 16 Si 0.900 3.100 17 H -0.284 1.284 18 H -0.288 1.288 19 H -0.276 1.276 20 C 0.126 3.874 21 C -0.193 4.193 22 C -0.224 4.224 23 O -0.193 6.193 24 H 0.041 0.959 25 H 0.086 0.914 26 H 0.040 0.960 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.068 0.932 34 H 0.111 0.889 35 H 0.260 0.740 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.767 -2.650 -4.583 11.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.012 4.012 4 C -0.018 4.018 5 O -0.182 6.182 6 C 0.057 3.943 7 C -0.251 4.251 8 C -0.234 4.234 9 C -0.040 4.040 10 C 0.085 3.915 11 N -0.253 5.253 12 C -0.393 4.393 13 H 0.081 0.919 14 C -0.180 4.180 15 N -0.526 5.526 16 Si 0.730 3.270 17 H -0.211 1.211 18 H -0.214 1.214 19 H -0.201 1.201 20 C 0.017 3.983 21 C -0.232 4.232 22 C -0.265 4.265 23 O -0.092 6.092 24 H 0.060 0.940 25 H 0.105 0.895 26 H 0.059 0.941 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.159 0.841 32 H 0.160 0.840 33 H 0.086 0.914 34 H 0.129 0.871 35 H 0.070 0.930 36 H 0.109 0.891 37 H 0.117 0.883 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.882 -2.805 -4.192 11.994 hybrid contribution -0.867 1.088 0.436 1.457 sum -11.749 -1.718 -3.756 12.454 Atomic orbital electron populations 1.22750 0.81049 1.02864 0.99887 1.87987 1.19650 1.27279 1.95402 1.22587 0.91535 0.85581 1.01460 1.22766 0.93346 0.99209 0.86470 1.86404 1.14185 1.78670 1.38971 1.20314 0.80239 1.02606 0.91101 1.20580 0.93423 1.11926 0.99192 1.21203 0.95103 1.09304 0.97808 1.24532 0.84815 0.98947 0.95690 1.19709 0.83090 0.86743 1.01996 1.43366 1.50030 1.04933 1.26959 1.18939 1.42827 0.90224 0.87345 0.91928 1.25210 0.98220 0.97529 0.97024 1.69857 1.41992 1.32198 1.08569 0.86329 0.80200 0.81208 0.79306 1.21095 1.21439 1.20127 1.21135 0.95319 0.91489 0.90328 1.23075 0.94225 1.03075 1.02792 1.23325 0.99104 1.08707 0.95316 1.84070 1.15802 1.66514 1.42820 0.94002 0.89547 0.94116 0.90947 0.91997 0.90766 0.89884 0.84130 0.84044 0.91392 0.87118 0.93003 0.89133 0.88281 0.90664 0.90817 0.89838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.38 -5.15 10.67 -40.09 -0.43 -5.58 16 3 C 0.06 0.78 6.32 37.16 0.23 1.02 16 4 C 0.06 0.88 6.07 37.16 0.23 1.11 16 5 O -0.27 -4.89 10.17 -45.72 -0.47 -5.35 16 6 C 0.15 3.07 7.87 29.63 0.23 3.30 16 7 C -0.23 -4.41 10.94 -39.47 -0.43 -4.85 16 8 C -0.21 -4.18 10.80 -39.70 -0.43 -4.61 16 9 C 0.01 0.27 6.90 -35.65 -0.25 0.02 16 10 C 0.21 4.89 5.86 -5.19 -0.03 4.86 16 11 N -0.54 -13.08 2.76 -167.02 -0.46 -13.54 16 12 C -0.26 -7.02 8.04 -15.06 -0.12 -7.14 16 13 H 0.06 1.70 7.23 -52.49 -0.38 1.32 16 14 C 0.02 0.57 4.97 -17.43 -0.09 0.49 16 15 N -0.88 -24.42 11.45 55.49 0.64 -23.79 16 16 Si 0.90 21.21 29.60 -169.99 -5.03 16.18 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 C 0.13 2.66 6.61 -67.93 -0.45 2.21 16 21 C -0.19 -3.82 9.81 -26.73 -0.26 -4.08 16 22 C -0.22 -4.35 10.09 -26.73 -0.27 -4.62 16 23 O -0.19 -4.37 10.16 -18.24 -0.19 -4.56 16 24 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.14 2.32 8.06 -52.49 -0.42 1.90 16 32 H 0.14 2.42 8.06 -52.48 -0.42 2.00 16 33 H 0.07 1.41 8.04 -51.93 -0.42 0.99 16 34 H 0.11 2.88 5.52 -51.93 -0.29 2.59 16 35 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 36 H 0.09 1.72 8.10 -51.93 -0.42 1.30 16 37 H 0.10 2.17 6.95 -51.93 -0.36 1.81 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.08 1.78 8.01 -51.93 -0.42 1.36 16 LS Contribution 342.99 15.07 5.17 5.17 Total: -1.00 -29.99 342.99 -7.35 -37.34 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -6.07 Total: 5.03 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -0.52 Total: -10.90 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.17 Total: -37.33 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -1.08 Total: -15.49 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.99 -7.35 -37.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891798220.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.800 kcal (2) G-P(sol) polarization free energy of solvation -29.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds