Wall clock time and date at job start Tue Mar 31 2020 05:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99850 * 2 1 4 4 C 1.52995 * 109.47042 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47542 * 64.99667 * 4 3 2 6 6 C 1.35772 * 117.00335 * 180.02562 * 5 4 3 7 7 C 1.35127 * 125.84367 * 180.02562 * 6 5 4 8 8 C 1.41443 * 106.79427 * 179.74866 * 7 6 5 9 9 C 1.34439 * 106.89552 * 0.40424 * 8 7 6 10 10 C 1.50702 * 125.74097 * 179.85140 * 9 8 7 11 11 N 1.46503 * 109.46696 * 89.71938 * 10 9 8 12 12 C 1.36933 * 120.00127 * 90.00287 * 11 10 9 13 13 H 1.07997 * 120.00060 * 218.04668 * 12 11 10 14 14 C 1.38815 * 119.99810 * 38.05059 * 12 11 10 15 15 N 1.31617 * 120.00212 * 20.57729 * 14 12 11 16 16 Si 1.86803 * 119.99759 * 200.57495 * 14 12 11 17 17 H 1.48506 * 109.46912 * 89.99831 * 16 14 12 18 18 H 1.48496 * 109.47451 * 209.99812 * 16 14 12 19 19 H 1.48500 * 109.47248 * 330.00210 * 16 14 12 20 20 C 1.46506 * 119.99904 * 269.99491 * 11 10 9 21 21 C 1.52992 * 117.49779 * 193.92124 * 20 11 10 22 22 C 1.53000 * 60.00213 * 252.51418 * 21 20 11 23 23 O 1.34326 * 125.84062 * 0.02694 * 6 5 4 24 24 H 1.08999 * 109.47268 * 59.99368 * 1 2 3 25 25 H 1.08997 * 109.47242 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46698 * 299.99855 * 1 2 3 27 27 H 1.09006 * 109.47285 * 60.00454 * 3 2 1 28 28 H 1.08999 * 109.47623 * 300.00535 * 3 2 1 29 29 H 1.09002 * 109.47056 * 304.99886 * 4 3 2 30 30 H 1.09001 * 109.47588 * 185.00222 * 4 3 2 31 31 H 1.08001 * 126.59695 * 359.97438 * 7 6 5 32 32 H 1.08005 * 126.55580 * 180.29642 * 8 7 6 33 33 H 1.08995 * 109.47019 * 329.71914 * 10 9 8 34 34 H 1.08999 * 109.47234 * 209.71426 * 10 9 8 35 35 H 0.97002 * 119.99575 * 174.97946 * 15 14 12 36 36 H 1.08997 * 115.54816 * 339.63998 * 20 11 10 37 37 H 1.09004 * 117.50348 * 0.02562 * 21 20 11 38 38 H 1.09003 * 117.49545 * 145.02413 * 21 20 11 39 39 H 1.09001 * 117.50003 * 252.51281 * 22 21 20 40 40 H 1.08997 * 117.51451 * 107.48258 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9649 0.5796 -1.2219 6 6 5.3007 0.3979 -1.3835 7 6 5.8995 -0.1533 -2.4621 8 6 7.2910 -0.1392 -2.2088 9 6 7.4612 0.4086 -0.9929 10 6 8.7831 0.6259 -0.3025 11 7 9.3103 1.9448 -0.6613 12 6 8.9937 3.0388 0.0990 13 1 8.8103 3.9914 -0.3755 14 6 8.9084 2.9232 1.4797 15 7 9.5041 1.9235 2.0945 16 14 7.9483 4.1868 2.4652 17 1 6.5352 3.7475 2.5900 18 1 8.5469 4.3187 3.8177 19 1 7.9994 5.4987 1.7712 20 6 10.1766 2.0933 -1.8335 21 6 10.9542 3.4032 -1.9757 22 6 9.7629 3.1174 -2.8923 23 8 6.2531 0.7355 -0.4984 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.6887 1.8464 0.8901 28 1 1.6886 1.8465 -0.8899 29 1 3.8514 0.5682 0.8410 30 1 3.9786 2.1765 0.0890 31 1 5.4101 -0.5288 -3.3486 32 1 8.0682 -0.5010 -2.8657 33 1 9.4875 -0.1446 -0.6158 34 1 8.6423 0.5723 0.7770 35 1 9.5064 1.8823 3.0637 36 1 10.6609 1.1800 -2.1788 37 1 10.8217 4.1544 -1.1971 38 1 11.9506 3.3518 -2.4147 39 1 9.9755 2.8779 -3.9342 40 1 8.8462 3.6804 -2.7169 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891798220.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:49 Heat of formation + Delta-G solvation = -33.253558 kcal Electronic energy + Delta-G solvation = -22332.090077 eV Core-core repulsion = 18922.573701 eV Total energy + Delta-G solvation = -3409.516376 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.43981 -39.84836 -38.76811 -38.41235 -35.44022 -34.02176 -32.98409 -31.77174 -29.91471 -27.37532 -26.90118 -25.24353 -23.95909 -22.92995 -22.64262 -21.70135 -21.37915 -19.67655 -18.47764 -18.10318 -17.39485 -17.28801 -16.77456 -16.55258 -16.28416 -15.90766 -15.72455 -15.46467 -14.93201 -14.58852 -14.09951 -13.78149 -13.63048 -13.60167 -13.24353 -13.04017 -12.81349 -12.73587 -12.63894 -12.57084 -12.17712 -12.11337 -12.06246 -11.89772 -11.46877 -10.95877 -10.75040 -10.66139 -10.49376 -8.77839 -8.51360 -7.93218 -5.53325 0.94508 1.37922 1.40974 1.48494 1.57027 1.80687 2.35985 2.43133 2.68186 3.12458 3.45786 3.54926 3.76355 3.93868 4.14614 4.20668 4.26366 4.30654 4.32662 4.43576 4.50040 4.51376 4.54298 4.57079 4.69698 4.81379 4.83185 4.97096 5.02536 5.07046 5.14164 5.35785 5.43077 5.56772 5.64510 5.74020 5.98185 6.10965 6.38393 6.50246 7.06526 7.74689 8.25336 9.04539 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015814 B = 0.005277 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.173098 B = 5304.281784 C = 6427.924743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.071 3.929 4 C 0.050 3.950 5 O -0.270 6.270 6 C 0.139 3.861 7 C -0.231 4.231 8 C -0.193 4.193 9 C -0.022 4.022 10 C 0.217 3.783 11 N -0.555 5.555 12 C -0.266 4.266 13 H 0.048 0.952 14 C -0.022 4.022 15 N -0.910 5.910 16 Si 0.949 3.051 17 H -0.286 1.286 18 H -0.285 1.285 19 H -0.271 1.271 20 C 0.104 3.896 21 C -0.190 4.190 22 C -0.206 4.206 23 O -0.220 6.220 24 H 0.053 0.947 25 H 0.095 0.905 26 H 0.057 0.943 27 H 0.101 0.899 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.170 0.830 32 H 0.170 0.830 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.257 0.743 36 H 0.117 0.883 37 H 0.069 0.931 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.582 -2.802 -6.251 13.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.005 4.005 4 C -0.025 4.025 5 O -0.185 6.185 6 C 0.046 3.954 7 C -0.251 4.251 8 C -0.213 4.213 9 C -0.073 4.073 10 C 0.090 3.910 11 N -0.271 5.271 12 C -0.396 4.396 13 H 0.066 0.934 14 C -0.220 4.220 15 N -0.552 5.552 16 Si 0.777 3.223 17 H -0.213 1.213 18 H -0.211 1.211 19 H -0.196 1.196 20 C -0.003 4.003 21 C -0.229 4.229 22 C -0.246 4.246 23 O -0.121 6.121 24 H 0.071 0.929 25 H 0.114 0.886 26 H 0.075 0.925 27 H 0.118 0.882 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.187 0.813 32 H 0.188 0.812 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.066 0.934 36 H 0.134 0.866 37 H 0.088 0.912 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.702 -2.951 -5.880 13.425 hybrid contribution -0.687 1.106 0.894 1.580 sum -12.390 -1.846 -4.986 13.482 Atomic orbital electron populations 1.22970 0.78829 1.04030 1.01254 1.87930 1.22122 1.27962 1.95711 1.22617 0.88825 0.85664 1.03405 1.23006 0.95994 0.98430 0.85073 1.86410 1.13067 1.78819 1.40248 1.20766 0.80758 1.02679 0.91152 1.20987 0.93274 1.11182 0.99657 1.21525 0.96058 1.06997 0.96677 1.24326 0.84381 1.01597 0.96962 1.19498 0.84388 0.86912 1.00203 1.43514 1.51228 1.04577 1.27758 1.18959 1.42318 0.90555 0.87776 0.93415 1.25765 0.99196 0.99252 0.97821 1.69961 1.43370 1.33534 1.08371 0.85569 0.78859 0.79655 0.78258 1.21312 1.21100 1.19628 1.21459 0.95884 0.93101 0.89875 1.23069 0.96022 1.01438 1.02323 1.23255 0.97768 1.06949 0.96673 1.84009 1.16590 1.67332 1.44165 0.92865 0.88614 0.92462 0.88164 0.90712 0.92054 0.90238 0.81277 0.81245 0.89407 0.90545 0.93361 0.86562 0.91203 0.87487 0.87425 0.92371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 11.01 113.37 1.25 1.64 16 2 O -0.42 -10.64 10.67 -144.34 -1.54 -12.18 16 3 C 0.07 1.61 6.32 71.98 0.45 2.06 16 4 C 0.05 1.54 6.07 71.98 0.44 1.97 16 5 O -0.27 -9.79 10.17 -65.48 -0.67 -10.46 16 6 C 0.14 5.63 7.87 67.10 0.53 6.16 16 7 C -0.23 -8.39 10.94 22.34 0.24 -8.14 16 8 C -0.19 -7.16 10.80 22.19 0.24 -6.92 16 9 C -0.02 -0.95 6.90 24.82 0.17 -0.78 16 10 C 0.22 10.13 5.86 85.63 0.50 10.63 16 11 N -0.55 -27.14 2.76 -682.34 -1.89 -29.02 16 12 C -0.27 -14.47 8.04 84.03 0.68 -13.79 16 13 H 0.05 2.68 7.23 -2.91 -0.02 2.66 16 14 C -0.02 -1.20 4.97 84.86 0.42 -0.78 16 15 N -0.91 -51.64 11.45 21.65 0.25 -51.40 16 16 Si 0.95 44.50 29.60 68.60 2.03 46.53 16 17 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 18 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 19 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 20 C 0.10 4.25 6.61 44.99 0.30 4.55 16 21 C -0.19 -7.25 9.81 30.59 0.30 -6.95 16 22 C -0.21 -7.60 10.09 30.59 0.31 -7.29 16 23 O -0.22 -10.19 10.16 16.74 0.17 -10.02 16 24 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 27 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 28 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.17 5.06 8.06 -2.91 -0.02 5.03 16 32 H 0.17 5.21 8.06 -2.91 -0.02 5.19 16 33 H 0.09 3.61 8.04 -2.39 -0.02 3.59 16 34 H 0.08 4.12 5.52 -2.39 -0.01 4.11 16 35 H 0.26 14.10 8.32 -92.71 -0.77 13.33 16 36 H 0.12 4.09 8.10 -2.39 -0.02 4.07 16 37 H 0.07 3.08 6.95 -2.38 -0.02 3.07 16 38 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 39 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 40 H 0.06 2.44 8.01 -2.39 -0.02 2.42 16 Total: -1.00 -65.81 342.99 5.21 -60.61 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: 1.02 Total: 23.56 kcal Atomic # 6 Polarization: -23.46 SS G_CDS: 5.83 Total: -17.63 kcal Atomic # 7 Polarization: -78.78 SS G_CDS: -1.64 Total: -80.42 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -2.04 Total: -32.65 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -65.81 5.21 -60.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891798220.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.355 kcal (2) G-P(sol) polarization free energy of solvation -65.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds