Wall clock time and date at job start Tue Mar 31 2020 05:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34221 * 117.00351 * 2 1 4 4 O 1.20833 * 119.99770 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00133 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.47314 * 179.97438 * 5 3 2 7 7 N 1.46497 * 109.47227 * 176.75310 * 6 5 3 8 8 C 1.37098 * 119.99691 * 83.67361 * 7 6 5 9 9 H 1.07999 * 120.00533 * 54.76669 * 8 7 6 10 10 C 1.38953 * 120.00022 * 234.75915 * 8 7 6 11 11 N 1.31414 * 119.99410 * 64.49994 * 10 8 7 12 12 Si 1.86794 * 120.00214 * 244.49988 * 10 8 7 13 13 H 1.48498 * 109.47617 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.47193 * 120.00083 * 12 10 8 15 15 H 1.48509 * 109.46951 * 239.99756 * 12 10 8 16 16 C 1.34777 * 120.00136 * 263.66956 * 7 6 5 17 17 O 1.21290 * 119.99861 * 170.64064 * 16 7 6 18 18 C 1.50696 * 120.00077 * 350.64113 * 16 7 6 19 19 C 1.53007 * 115.54920 * 178.92426 * 18 16 7 20 20 C 1.52996 * 117.49707 * 34.33582 * 19 18 16 21 21 C 1.52998 * 117.50031 * 325.67599 * 19 18 16 22 22 C 1.53002 * 117.49579 * 33.26287 * 18 16 7 23 23 C 1.52998 * 117.50119 * 324.59994 * 18 16 7 24 24 H 1.09001 * 109.47626 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47426 * 300.00804 * 1 2 3 26 26 H 1.09006 * 109.46614 * 60.00526 * 1 2 3 27 27 H 1.09000 * 109.47583 * 59.99915 * 5 3 2 28 28 H 1.08999 * 109.47214 * 299.99238 * 5 3 2 29 29 H 1.08996 * 109.47383 * 296.75672 * 6 5 3 30 30 H 1.09010 * 109.46901 * 56.75512 * 6 5 3 31 31 H 0.97003 * 119.99876 * 184.93638 * 11 10 8 32 32 H 1.09001 * 115.54642 * 179.97438 * 19 18 16 33 33 H 1.09003 * 117.49909 * 359.97438 * 20 19 18 34 34 H 1.08996 * 117.50002 * 145.01419 * 20 19 18 35 35 H 1.08998 * 117.49824 * 214.97447 * 21 19 18 36 36 H 1.09001 * 117.50032 * 359.97438 * 21 19 18 37 37 H 1.08994 * 117.50048 * 359.97438 * 22 18 16 38 38 H 1.09002 * 117.49538 * 145.02198 * 22 18 16 39 39 H 1.08998 * 117.50032 * 214.97559 * 23 18 16 40 40 H 1.08994 * 117.49584 * 359.97438 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 0.0006 6 6 4.0002 2.7419 -0.0002 7 7 5.4610 2.8192 0.0786 8 6 6.2159 2.7050 -1.0601 9 1 6.0288 3.3579 -1.8998 10 6 7.2218 1.7492 -1.1339 11 7 6.9183 0.4713 -1.0916 12 14 9.0054 2.2808 -1.2933 13 1 9.0796 3.7637 -1.3193 14 1 9.7807 1.7662 -0.1360 15 1 9.5740 1.7351 -2.5521 16 6 6.0629 3.0026 1.2705 17 8 7.2676 2.8976 1.3641 18 6 5.2390 3.3381 2.4869 19 6 6.0230 3.4993 3.7910 20 6 7.4273 4.0998 3.7013 21 6 7.2498 2.6075 3.9926 22 6 3.8347 2.7375 2.5765 23 6 4.0123 4.2299 2.2853 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 3.9565 0.7804 -0.8891 28 1 3.9557 0.7809 0.8909 29 1 3.6600 3.2209 -0.9182 30 1 3.5626 3.2506 0.8589 31 1 7.6236 -0.1943 -1.0708 32 1 5.4271 3.7424 4.6707 33 1 7.7929 4.3796 2.7133 34 1 7.7555 4.7372 4.5223 35 1 7.4612 2.2639 5.0051 36 1 7.4982 1.9057 3.1964 37 1 3.5065 2.1001 1.7555 38 1 3.4691 2.4578 3.5646 39 1 3.7634 4.9311 3.0818 40 1 3.8013 4.5742 1.2729 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893167202.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:51 Heat of formation + Delta-G solvation = 3.745883 kcal Electronic energy + Delta-G solvation = -23600.006650 eV Core-core repulsion = 20192.094690 eV Total energy + Delta-G solvation = -3407.911960 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.66525 -39.75173 -36.62885 -36.31881 -35.81918 -33.73928 -32.25956 -30.55332 -27.57233 -25.32985 -24.58935 -22.80783 -22.33002 -21.53887 -21.17347 -20.21398 -18.81582 -17.45120 -16.83274 -16.41349 -16.12424 -15.42087 -15.39033 -14.62105 -14.31167 -13.90573 -13.67641 -13.58985 -13.14123 -13.00481 -12.38485 -12.34334 -12.01451 -11.89739 -11.68651 -11.38236 -11.00018 -10.86317 -10.75845 -10.63894 -10.57551 -10.47864 -10.47259 -10.15543 -10.07543 -9.88094 -9.37875 -8.87825 -8.42056 -8.07864 -7.56995 -6.51985 -3.86559 2.52241 2.96097 3.35041 3.51911 3.59135 3.67967 4.23558 4.34553 4.68711 4.75009 4.89294 4.89349 5.09682 5.16916 5.21613 5.23169 5.41659 5.53397 5.54602 5.60314 5.73075 5.78346 5.82283 5.87659 5.92057 6.12617 6.20190 6.24557 6.35441 6.41873 6.46538 6.54580 6.60589 6.81410 6.91302 7.02871 7.45027 8.03660 8.29114 8.90540 9.04929 9.48867 10.13500 10.31890 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014344 B = 0.007780 C = 0.005619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.545267 B = 3598.259118 C = 4981.649653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.362 6.362 3 C 0.464 3.536 4 O -0.514 6.514 5 C -0.129 4.129 6 C 0.054 3.946 7 N -0.432 5.432 8 C -0.441 4.441 9 H 0.081 0.919 10 C 0.150 3.850 11 N -0.767 5.767 12 Si 0.869 3.131 13 H -0.267 1.267 14 H -0.278 1.278 15 H -0.302 1.302 16 C 0.511 3.489 17 O -0.545 6.545 18 C -0.109 4.109 19 C -0.114 4.114 20 C -0.167 4.167 21 C -0.168 4.168 22 C -0.199 4.199 23 C -0.169 4.169 24 H 0.096 0.904 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.125 0.875 28 H 0.102 0.898 29 H 0.066 0.934 30 H 0.117 0.883 31 H 0.268 0.732 32 H 0.098 0.902 33 H 0.115 0.885 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.111 0.889 37 H 0.127 0.873 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.276 -0.012 6.317 11.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.278 6.278 3 C 0.307 3.693 4 O -0.402 6.402 5 C -0.167 4.167 6 C -0.068 4.068 7 N -0.152 5.152 8 C -0.561 4.561 9 H 0.099 0.901 10 C -0.072 4.072 11 N -0.393 5.393 12 Si 0.694 3.306 13 H -0.191 1.191 14 H -0.203 1.203 15 H -0.230 1.230 16 C 0.299 3.701 17 O -0.427 6.427 18 C -0.113 4.113 19 C -0.132 4.132 20 C -0.204 4.204 21 C -0.205 4.205 22 C -0.236 4.236 23 C -0.206 4.206 24 H 0.114 0.886 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.143 0.857 28 H 0.120 0.880 29 H 0.084 0.916 30 H 0.134 0.866 31 H 0.079 0.921 32 H 0.116 0.884 33 H 0.133 0.867 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.129 0.871 37 H 0.144 0.856 38 H 0.110 0.890 39 H 0.114 0.886 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.906 0.003 6.269 10.891 hybrid contribution 0.509 -0.047 0.035 0.512 sum -8.397 -0.043 6.304 10.500 Atomic orbital electron populations 1.23193 0.77344 1.03193 1.02262 1.86581 1.22729 1.34240 1.84281 1.24328 0.92600 0.80934 0.71418 1.90621 1.67458 1.36236 1.45891 1.22056 0.84935 1.02771 1.06980 1.23010 0.86441 0.92621 1.04739 1.43146 1.02483 1.63685 1.05862 1.18234 1.19525 1.21251 0.97102 0.90114 1.25156 1.00830 0.92260 0.88956 1.70713 1.36040 1.02256 1.30263 0.87016 0.86294 0.81219 0.76022 1.19127 1.20326 1.23043 1.19340 0.87466 0.80163 0.83092 1.90390 1.14721 1.54061 1.83494 1.21116 0.89077 1.05534 0.95558 1.21307 0.89855 1.07141 0.94918 1.23054 0.97994 0.95783 1.03564 1.23010 1.00979 0.94955 1.01547 1.24106 0.98399 0.96908 1.04173 1.23311 1.00616 0.93232 1.03399 0.88558 0.92165 0.92129 0.85696 0.87997 0.91569 0.86637 0.92101 0.88412 0.86720 0.90485 0.90470 0.87059 0.85571 0.89033 0.88579 0.86775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 101.05 1.07 1.45 16 2 O -0.36 -5.53 10.56 -39.23 -0.41 -5.95 16 3 C 0.46 7.92 7.46 36.00 0.27 8.19 16 4 O -0.51 -9.37 15.70 -18.76 -0.29 -9.66 16 5 C -0.13 -2.42 5.12 -27.88 -0.14 -2.57 16 6 C 0.05 1.09 3.46 -4.04 -0.01 1.08 16 7 N -0.43 -10.28 2.58 -114.81 -0.30 -10.58 16 8 C -0.44 -11.79 8.80 -14.93 -0.13 -11.93 16 9 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 10 C 0.15 4.04 4.29 -17.47 -0.08 3.97 16 11 N -0.77 -20.40 13.95 55.50 0.77 -19.62 16 12 Si 0.87 22.07 28.16 -169.99 -4.79 17.28 16 13 H -0.27 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 15 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 16 C 0.51 12.01 7.02 -10.99 -0.08 11.94 16 17 O -0.55 -14.24 9.43 5.55 0.05 -14.19 16 18 C -0.11 -2.05 2.46 -155.66 -0.38 -2.44 16 19 C -0.11 -1.96 5.84 -90.62 -0.53 -2.49 16 20 C -0.17 -2.99 9.66 -26.70 -0.26 -3.24 16 21 C -0.17 -3.04 9.66 -26.70 -0.26 -3.30 16 22 C -0.20 -3.26 9.02 -26.69 -0.24 -3.50 16 23 C -0.17 -2.71 9.04 -26.69 -0.24 -2.95 16 24 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 26 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 27 H 0.13 2.60 8.14 -51.93 -0.42 2.18 16 28 H 0.10 1.93 7.01 -51.93 -0.36 1.56 16 29 H 0.07 1.36 8.09 -51.93 -0.42 0.94 16 30 H 0.12 2.11 1.70 -53.28 -0.09 2.02 16 31 H 0.27 6.74 8.32 -40.82 -0.34 6.40 16 32 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.11 2.41 6.24 -51.93 -0.32 2.09 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.11 2.40 6.32 -51.93 -0.33 2.08 16 37 H 0.13 2.17 1.97 -51.93 -0.10 2.07 16 38 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.11 1.91 6.04 -51.93 -0.31 1.60 16 LS Contribution 321.12 15.07 4.84 4.84 Total: -1.00 -29.91 321.12 -6.45 -36.36 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -5.30 Total: 7.32 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -1.02 Total: -5.80 kcal Atomic # 7 Polarization: -30.68 SS G_CDS: 0.48 Total: -30.20 kcal Atomic # 8 Polarization: -29.15 SS G_CDS: -0.66 Total: -29.80 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.79 Total: 17.28 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.91 -6.45 -36.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893167202.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.105 kcal (2) G-P(sol) polarization free energy of solvation -29.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds