Wall clock time and date at job start Tue Mar 31 2020 05:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35985 * 116.99852 * 2 1 4 4 C 1.38719 * 120.00169 * 0.02562 * 3 2 1 5 5 C 1.38106 * 119.99872 * 179.97438 * 4 3 2 6 6 C 1.38721 * 120.00187 * 359.70443 * 5 4 3 7 7 O 1.35983 * 120.00337 * 180.29266 * 6 5 4 8 8 C 1.42897 * 116.99928 * 0.25433 * 7 6 5 9 9 C 1.38673 * 119.99813 * 0.55082 * 6 5 4 10 10 C 1.50699 * 120.00192 * 179.74960 * 9 6 5 11 11 H 1.09004 * 109.47021 * 34.71721 * 10 9 6 12 12 O 1.42898 * 109.47513 * 154.72124 * 10 9 6 13 13 C 1.53006 * 109.47125 * 274.72095 * 10 9 6 14 14 N 1.46898 * 109.47138 * 179.97438 * 13 10 9 15 15 C 1.46906 * 110.99888 * 180.02562 * 14 13 10 16 16 C 1.50699 * 109.47140 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99962 * 359.97438 * 16 15 14 18 18 C 1.37873 * 119.99861 * 180.02562 * 16 15 14 19 19 N 1.31522 * 120.00244 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99980 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46946 * 59.99897 * 20 18 16 22 22 H 1.48506 * 109.46938 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46921 * 299.99580 * 20 18 16 24 24 C 1.38154 * 120.00164 * 359.46969 * 9 6 5 25 25 H 1.09005 * 109.47373 * 59.99768 * 1 2 3 26 26 H 1.09001 * 109.47291 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47430 * 300.00452 * 1 2 3 28 28 H 1.07997 * 119.99687 * 359.97438 * 4 3 2 29 29 H 1.08001 * 119.99734 * 179.97438 * 5 4 3 30 30 H 1.09006 * 109.47484 * 300.00439 * 8 7 6 31 31 H 1.09003 * 109.47212 * 59.99922 * 8 7 6 32 32 H 1.08999 * 109.47570 * 180.02562 * 8 7 6 33 33 H 0.96699 * 113.99900 * 59.99742 * 12 10 9 34 34 H 1.08997 * 109.46770 * 59.99791 * 13 10 9 35 35 H 1.08995 * 109.47019 * 300.00004 * 13 10 9 36 36 H 1.00901 * 111.00121 * 56.04666 * 14 13 10 37 37 H 1.09004 * 109.47040 * 299.99934 * 15 14 13 38 38 H 1.09000 * 109.47033 * 59.99886 * 15 14 13 39 39 H 0.96992 * 120.00038 * 179.97438 * 19 18 16 40 40 H 1.08000 * 120.00308 * 180.28270 * 24 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2908 2.3751 0.0005 5 6 1.9178 3.6056 0.0011 6 6 3.3031 3.6782 0.0073 7 8 3.9205 4.8898 0.0138 8 6 3.0805 6.0458 0.0196 9 6 4.0583 2.5152 0.0014 10 6 5.5633 2.5940 0.0024 11 1 5.8817 3.4535 0.5924 12 8 6.1025 1.3993 0.5716 13 6 6.0670 2.7469 -1.4343 14 7 7.5339 2.8244 -1.4332 15 6 8.0542 2.9725 -2.7990 16 6 9.5587 3.0491 -2.7579 17 1 10.0765 2.9936 -1.8117 18 6 10.2740 3.1909 -3.9280 19 7 9.6433 3.2589 -5.0801 20 14 12.1389 3.2850 -3.8771 21 1 12.6810 2.0411 -3.2737 22 1 12.6648 3.4349 -5.2578 23 1 12.5534 4.4533 -3.0594 24 6 3.4312 1.2842 0.0004 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 0.2123 2.3185 0.0005 29 1 1.3295 4.5113 0.0011 30 1 2.4515 6.0424 -0.8707 31 1 2.4509 6.0331 0.9093 32 1 3.6983 6.9438 0.0240 33 1 5.8594 0.5929 0.0966 34 1 5.6556 3.6582 -1.8684 35 1 5.7485 1.8875 -2.0243 36 1 7.9381 2.0202 -0.9772 37 1 7.7499 2.1147 -3.3988 38 1 7.6563 3.8853 -3.2424 39 1 10.1465 3.3590 -5.9032 40 1 4.0194 0.3784 0.0004 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915223473.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:46 Heat of formation + Delta-G solvation = -97.763925 kcal Electronic energy + Delta-G solvation = -21844.301241 eV Core-core repulsion = 18431.987486 eV Total energy + Delta-G solvation = -3412.313755 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.73409 -39.11277 -37.84098 -36.04132 -34.52470 -32.33944 -31.58811 -30.15281 -28.20835 -27.51065 -27.02068 -25.60573 -22.90692 -22.13245 -21.22704 -20.91415 -18.55909 -17.69433 -17.04330 -16.64324 -15.99414 -15.84381 -15.64741 -15.21230 -14.85161 -14.83594 -14.49509 -14.11117 -13.64330 -13.15622 -13.05578 -12.95877 -12.68299 -12.39429 -12.21712 -11.86822 -11.76434 -11.38827 -11.25623 -11.10493 -10.82581 -10.73446 -10.59907 -10.50336 -10.10978 -9.72547 -9.17459 -8.91665 -8.42182 -7.81553 -7.20560 -5.97583 -3.99195 1.07912 1.34582 3.07494 3.27090 3.38549 3.41422 3.45441 3.55061 4.44467 4.50888 4.53215 4.61963 4.81108 4.88529 4.92979 4.96823 5.05265 5.15434 5.20692 5.30717 5.38114 5.40770 5.48279 5.54599 5.64877 5.80009 5.96224 6.08262 6.13477 6.34290 6.39948 6.56881 7.13073 7.31266 7.36076 7.48480 7.81914 7.85502 8.18829 8.49391 8.70197 9.10496 9.65430 11.13626 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.022272 B = 0.003507 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.899603 B = 7982.704918 C = 8591.980158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.318 6.318 3 C 0.092 3.908 4 C -0.173 4.173 5 C -0.169 4.169 6 C 0.104 3.896 7 O -0.307 6.307 8 C 0.028 3.972 9 C -0.099 4.099 10 C 0.158 3.842 11 H 0.121 0.879 12 O -0.552 6.552 13 C 0.040 3.960 14 N -0.684 5.684 15 C 0.195 3.805 16 C -0.512 4.512 17 H 0.063 0.937 18 C 0.055 3.945 19 N -0.900 5.900 20 Si 0.900 3.100 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.276 1.276 24 C -0.106 4.106 25 H 0.053 0.947 26 H 0.098 0.902 27 H 0.053 0.947 28 H 0.129 0.871 29 H 0.131 0.869 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.101 0.899 33 H 0.368 0.632 34 H 0.075 0.925 35 H 0.019 0.981 36 H 0.335 0.665 37 H -0.015 1.015 38 H 0.027 0.973 39 H 0.261 0.739 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.699 -1.422 10.914 24.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C 0.048 3.952 4 C -0.192 4.192 5 C -0.188 4.188 6 C 0.059 3.941 7 O -0.220 6.220 8 C -0.067 4.067 9 C -0.101 4.101 10 C 0.098 3.902 11 H 0.139 0.861 12 O -0.357 6.357 13 C -0.091 4.091 14 N -0.316 5.316 15 C 0.068 3.932 16 C -0.551 4.551 17 H 0.081 0.919 18 C -0.146 4.146 19 N -0.540 5.540 20 Si 0.728 3.272 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.201 1.201 24 C -0.125 4.125 25 H 0.072 0.928 26 H 0.117 0.883 27 H 0.071 0.929 28 H 0.146 0.854 29 H 0.149 0.851 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.120 0.880 33 H 0.216 0.784 34 H 0.093 0.907 35 H 0.037 0.963 36 H 0.152 0.848 37 H 0.003 0.997 38 H 0.045 0.955 39 H 0.071 0.929 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -21.106 -0.434 11.258 23.925 hybrid contribution -0.173 -0.848 -0.993 1.318 sum -21.278 -1.283 10.265 23.660 Atomic orbital electron populations 1.23012 0.78734 1.03787 1.01110 1.86082 1.21038 1.26694 1.89345 1.18784 0.92045 0.84189 1.00223 1.20961 0.99788 0.91695 1.06741 1.20982 0.93126 0.98369 1.06310 1.18644 0.90588 0.85439 0.99455 1.86177 1.35122 1.11942 1.88738 1.23051 0.95935 0.86866 1.00854 1.19866 0.97477 0.90143 1.02574 1.20821 0.85099 0.88583 0.95678 0.86112 1.86646 1.75981 1.16171 1.56872 1.22458 0.92142 1.00599 0.93878 1.60566 1.01981 1.46615 1.22427 1.19552 0.95042 0.95726 0.82885 1.21172 0.91245 1.49620 0.93064 0.91909 1.24996 0.98861 0.95430 0.95353 1.69961 1.35690 1.50615 0.97688 0.86528 0.85172 0.78688 0.76812 1.20235 1.21407 1.20140 1.19952 0.91327 0.97514 1.03659 0.92823 0.88350 0.92881 0.85362 0.85124 0.92815 0.92986 0.88021 0.78435 0.90692 0.96307 0.84783 0.99743 0.95521 0.92923 0.84475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.58 10.50 -19.69 -0.21 -3.79 16 3 C 0.09 1.13 6.69 -39.24 -0.26 0.87 16 4 C -0.17 -1.85 9.03 -39.45 -0.36 -2.21 16 5 C -0.17 -1.89 9.03 -39.45 -0.36 -2.24 16 6 C 0.10 1.41 6.66 -39.24 -0.26 1.15 16 7 O -0.31 -4.18 9.62 -19.69 -0.19 -4.37 16 8 C 0.03 0.25 9.81 101.05 0.99 1.25 16 9 C -0.10 -1.43 5.08 -104.49 -0.53 -1.96 16 10 C 0.16 2.55 3.20 -27.88 -0.09 2.46 16 11 H 0.12 2.11 7.68 -51.93 -0.40 1.72 16 12 O -0.55 -8.58 12.33 -35.23 -0.43 -9.02 16 13 C 0.04 0.75 5.37 -3.82 -0.02 0.73 16 14 N -0.68 -15.62 6.49 -115.05 -0.75 -16.37 16 15 C 0.19 5.33 5.44 -4.97 -0.03 5.30 16 16 C -0.51 -15.05 9.32 -34.44 -0.32 -15.37 16 17 H 0.06 1.81 7.81 -52.48 -0.41 1.40 16 18 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.53 13.29 55.43 0.74 -26.79 16 20 Si 0.90 22.23 29.54 -169.99 -5.02 17.20 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 C -0.11 -1.40 9.24 -39.45 -0.36 -1.76 16 25 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 26 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 28 H 0.13 1.02 6.29 -52.49 -0.33 0.69 16 29 H 0.13 1.11 6.29 -52.49 -0.33 0.78 16 30 H 0.05 0.43 7.65 -51.93 -0.40 0.03 16 31 H 0.05 0.38 7.67 -51.93 -0.40 -0.02 16 32 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.37 4.53 7.32 45.56 0.33 4.87 16 34 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 35 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.33 7.42 8.12 -39.29 -0.32 7.10 16 37 H -0.02 -0.44 8.14 -51.93 -0.42 -0.86 16 38 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.14 1.61 6.40 -52.49 -0.34 1.27 16 LS Contribution 334.94 15.07 5.05 5.05 Total: -1.00 -34.00 334.94 -6.57 -40.57 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -5.05 Total: 6.59 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -0.70 Total: -9.08 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: -0.01 Total: -43.16 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.83 Total: -17.18 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.00 -6.57 -40.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915223473.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.194 kcal (2) G-P(sol) polarization free energy of solvation -33.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds