Wall clock time and date at job start Tue Mar 31 2020 05:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35985 * 116.99852 * 2 1 4 4 C 1.38719 * 120.00169 * 0.02562 * 3 2 1 5 5 C 1.38106 * 119.99872 * 179.97438 * 4 3 2 6 6 C 1.38721 * 120.00187 * 359.70443 * 5 4 3 7 7 O 1.35983 * 120.00337 * 180.29266 * 6 5 4 8 8 C 1.42897 * 116.99928 * 0.25433 * 7 6 5 9 9 C 1.38673 * 119.99813 * 0.55082 * 6 5 4 10 10 C 1.50699 * 120.00192 * 179.74960 * 9 6 5 11 11 H 1.09004 * 109.47021 * 34.71721 * 10 9 6 12 12 O 1.42898 * 109.47513 * 154.72124 * 10 9 6 13 13 C 1.53006 * 109.47125 * 274.72095 * 10 9 6 14 14 N 1.46898 * 109.47138 * 179.97438 * 13 10 9 15 15 C 1.46906 * 110.99888 * 180.02562 * 14 13 10 16 16 C 1.50699 * 109.47140 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99962 * 359.97438 * 16 15 14 18 18 C 1.37873 * 119.99861 * 180.02562 * 16 15 14 19 19 N 1.31522 * 120.00244 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99980 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46946 * 59.99897 * 20 18 16 22 22 H 1.48506 * 109.46938 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46921 * 299.99580 * 20 18 16 24 24 C 1.38154 * 120.00164 * 359.46969 * 9 6 5 25 25 H 1.09005 * 109.47373 * 59.99768 * 1 2 3 26 26 H 1.09001 * 109.47291 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47430 * 300.00452 * 1 2 3 28 28 H 1.07997 * 119.99687 * 359.97438 * 4 3 2 29 29 H 1.08001 * 119.99734 * 179.97438 * 5 4 3 30 30 H 1.09006 * 109.47484 * 300.00439 * 8 7 6 31 31 H 1.09003 * 109.47212 * 59.99922 * 8 7 6 32 32 H 1.08999 * 109.47570 * 180.02562 * 8 7 6 33 33 H 0.96699 * 113.99900 * 59.99742 * 12 10 9 34 34 H 1.08997 * 109.46770 * 59.99791 * 13 10 9 35 35 H 1.08995 * 109.47019 * 300.00004 * 13 10 9 36 36 H 1.00901 * 111.00121 * 56.04666 * 14 13 10 37 37 H 1.09004 * 109.47040 * 299.99934 * 15 14 13 38 38 H 1.09000 * 109.47033 * 59.99886 * 15 14 13 39 39 H 0.96992 * 120.00038 * 179.97438 * 19 18 16 40 40 H 1.08000 * 120.00308 * 180.28270 * 24 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2908 2.3751 0.0005 5 6 1.9178 3.6056 0.0011 6 6 3.3031 3.6782 0.0073 7 8 3.9205 4.8898 0.0138 8 6 3.0805 6.0458 0.0196 9 6 4.0583 2.5152 0.0014 10 6 5.5633 2.5940 0.0024 11 1 5.8817 3.4535 0.5924 12 8 6.1025 1.3993 0.5716 13 6 6.0670 2.7469 -1.4343 14 7 7.5339 2.8244 -1.4332 15 6 8.0542 2.9725 -2.7990 16 6 9.5587 3.0491 -2.7579 17 1 10.0765 2.9936 -1.8117 18 6 10.2740 3.1909 -3.9280 19 7 9.6433 3.2589 -5.0801 20 14 12.1389 3.2850 -3.8771 21 1 12.6810 2.0411 -3.2737 22 1 12.6648 3.4349 -5.2578 23 1 12.5534 4.4533 -3.0594 24 6 3.4312 1.2842 0.0004 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 0.2123 2.3185 0.0005 29 1 1.3295 4.5113 0.0011 30 1 2.4515 6.0424 -0.8707 31 1 2.4509 6.0331 0.9093 32 1 3.6983 6.9438 0.0240 33 1 5.8594 0.5929 0.0966 34 1 5.6556 3.6582 -1.8684 35 1 5.7485 1.8875 -2.0243 36 1 7.9381 2.0202 -0.9772 37 1 7.7499 2.1147 -3.3988 38 1 7.6563 3.8853 -3.2424 39 1 10.1465 3.3590 -5.9032 40 1 4.0194 0.3784 0.0004 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915223473.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:45 Heat of formation + Delta-G solvation = -124.549476 kcal Electronic energy + Delta-G solvation = -21845.462750 eV Core-core repulsion = 18431.987486 eV Total energy + Delta-G solvation = -3413.475264 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.65677 -39.95436 -39.07515 -37.09247 -36.31746 -34.41001 -32.68926 -31.08739 -29.80442 -28.29791 -27.74660 -27.32306 -24.44229 -23.24972 -22.98110 -22.04439 -19.50726 -18.69839 -18.53418 -17.97494 -17.26692 -16.86094 -16.76722 -16.48542 -16.40785 -15.78358 -15.66380 -15.31681 -15.11143 -14.76549 -14.35050 -14.05054 -13.71942 -13.62482 -13.40654 -13.14938 -12.97517 -12.68591 -12.66135 -12.57575 -12.44321 -12.17202 -12.07085 -11.82763 -11.46808 -11.33676 -10.99454 -10.66126 -9.96671 -9.14776 -8.72503 -8.22675 -6.34468 0.14399 0.41878 1.41496 1.45931 1.53921 2.32352 2.40491 2.46019 2.60814 3.10119 3.35188 3.41506 3.73184 3.84394 4.06838 4.16109 4.20286 4.22172 4.29579 4.40777 4.42462 4.42718 4.49023 4.69047 4.71830 4.74994 4.77376 4.82180 5.04638 5.18671 5.20930 5.23968 5.31626 5.52788 5.60635 6.00095 6.33436 6.42203 6.51590 6.66453 6.73728 6.88509 7.36434 8.88962 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.022272 B = 0.003507 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.899603 B = 7982.704918 C = 8591.980158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.084 3.916 4 C -0.164 4.164 5 C -0.165 4.165 6 C 0.088 3.912 7 O -0.336 6.336 8 C 0.018 3.982 9 C -0.122 4.122 10 C 0.176 3.824 11 H 0.104 0.896 12 O -0.560 6.560 13 C 0.046 3.954 14 N -0.684 5.684 15 C 0.210 3.790 16 C -0.538 4.538 17 H 0.064 0.936 18 C 0.001 3.999 19 N -0.935 5.935 20 Si 0.976 3.024 21 H -0.265 1.265 22 H -0.281 1.281 23 H -0.268 1.268 24 C -0.118 4.118 25 H 0.064 0.936 26 H 0.117 0.883 27 H 0.067 0.933 28 H 0.161 0.839 29 H 0.160 0.840 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.109 0.891 33 H 0.382 0.618 34 H 0.062 0.938 35 H 0.021 0.979 36 H 0.340 0.660 37 H -0.039 1.039 38 H -0.002 1.002 39 H 0.266 0.734 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.841 -1.491 11.709 25.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.039 3.961 4 C -0.183 4.183 5 C -0.184 4.184 6 C 0.043 3.957 7 O -0.250 6.250 8 C -0.076 4.076 9 C -0.123 4.123 10 C 0.116 3.884 11 H 0.122 0.878 12 O -0.367 6.367 13 C -0.084 4.084 14 N -0.316 5.316 15 C 0.082 3.918 16 C -0.576 4.576 17 H 0.082 0.918 18 C -0.197 4.197 19 N -0.575 5.575 20 Si 0.800 3.200 21 H -0.190 1.190 22 H -0.206 1.206 23 H -0.193 1.193 24 C -0.137 4.137 25 H 0.082 0.918 26 H 0.135 0.865 27 H 0.085 0.915 28 H 0.179 0.821 29 H 0.178 0.822 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.128 0.872 33 H 0.232 0.768 34 H 0.080 0.920 35 H 0.039 0.961 36 H 0.158 0.842 37 H -0.021 1.021 38 H 0.016 0.984 39 H 0.075 0.925 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -22.278 -0.515 12.071 25.344 hybrid contribution 0.020 -0.845 -1.233 1.495 sum -22.259 -1.361 10.838 24.794 Atomic orbital electron populations 1.23342 0.76481 1.05551 1.02268 1.86063 1.23412 1.26329 1.89214 1.18904 0.91891 0.85215 1.00063 1.21349 1.01383 0.90842 1.04694 1.21308 0.92238 0.99826 1.04980 1.18865 0.91687 0.85219 0.99931 1.86135 1.37064 1.12936 1.88898 1.23331 0.96247 0.85638 1.02364 1.19672 0.96054 0.91374 1.05235 1.20386 0.86786 0.88329 0.92869 0.87805 1.86600 1.76291 1.16676 1.57108 1.22461 0.89589 1.00004 0.96379 1.60436 1.04426 1.47031 1.19692 1.19208 0.94691 0.93247 0.84668 1.21512 0.92236 1.50396 0.93497 0.91769 1.25990 1.04560 0.94456 0.94715 1.70091 1.37976 1.50919 0.98483 0.85336 0.78183 0.79221 0.77252 1.19002 1.20575 1.19294 1.20065 0.92383 0.97237 1.04011 0.91765 0.86516 0.91468 0.82139 0.82238 0.91651 0.90970 0.87231 0.76838 0.91951 0.96058 0.84243 1.02144 0.98395 0.92530 0.84022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.34 -7.00 10.50 -93.38 -0.98 -7.98 16 3 C 0.08 1.94 6.69 22.49 0.15 2.09 16 4 C -0.16 -3.08 9.03 22.35 0.20 -2.88 16 5 C -0.17 -3.32 9.03 22.35 0.20 -3.12 16 6 C 0.09 2.36 6.66 22.49 0.15 2.51 16 7 O -0.34 -9.19 9.62 -93.35 -0.90 -10.08 16 8 C 0.02 0.31 9.81 113.37 1.11 1.42 16 9 C -0.12 -3.54 5.08 -19.78 -0.10 -3.64 16 10 C 0.18 5.87 3.20 29.85 0.10 5.96 16 11 H 0.10 3.79 7.68 -2.39 -0.02 3.78 16 12 O -0.56 -17.66 12.33 -148.98 -1.84 -19.50 16 13 C 0.05 1.81 5.37 86.31 0.46 2.27 16 14 N -0.68 -32.32 6.49 -517.92 -3.36 -35.69 16 15 C 0.21 11.95 5.44 85.56 0.47 12.42 16 16 C -0.54 -32.19 9.32 25.60 0.24 -31.95 16 17 H 0.06 3.74 7.81 -2.91 -0.02 3.71 16 18 C 0.00 0.05 5.46 84.65 0.46 0.52 16 19 N -0.93 -58.03 13.29 21.45 0.28 -57.75 16 20 Si 0.98 45.53 29.54 68.60 2.03 47.56 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 24 C -0.12 -3.09 9.24 22.36 0.21 -2.89 16 25 H 0.06 0.58 7.66 -2.38 -0.02 0.57 16 26 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.07 0.56 7.66 -2.39 -0.02 0.54 16 28 H 0.16 1.89 6.29 -2.91 -0.02 1.87 16 29 H 0.16 2.18 6.29 -2.91 -0.02 2.16 16 30 H 0.06 0.93 7.65 -2.38 -0.02 0.91 16 31 H 0.07 0.90 7.67 -2.39 -0.02 0.88 16 32 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.38 9.51 7.32 -74.06 -0.54 8.97 16 34 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.34 15.42 8.12 -89.69 -0.73 14.70 16 37 H -0.04 -2.37 8.14 -2.38 -0.02 -2.38 16 38 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 39 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 40 H 0.14 3.35 6.40 -2.91 -0.02 3.33 16 Total: -1.00 -74.27 334.94 -0.21 -74.49 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: -0.21 Total: 24.92 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: 4.76 Total: -15.98 kcal Atomic # 7 Polarization: -90.36 SS G_CDS: -3.08 Total: -93.43 kcal Atomic # 8 Polarization: -33.84 SS G_CDS: -3.71 Total: -37.56 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -74.27 -0.21 -74.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915223473.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.064 kcal (2) G-P(sol) polarization free energy of solvation -74.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds