Wall clock time and date at job start Tue Mar 31 2020 06:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34485 * 126.16042 * 2 1 4 4 C 1.30260 * 108.69814 * 179.97438 * 3 2 1 5 5 O 1.33967 * 108.75886 * 359.97438 * 4 3 2 6 6 C 1.34330 * 126.17007 * 179.97438 * 2 1 3 7 7 C 1.50703 * 126.44063 * 359.97438 * 6 2 1 8 8 N 1.46507 * 109.46571 * 90.00580 * 7 6 2 9 9 C 1.34775 * 119.99786 * 180.02562 * 8 7 6 10 10 O 1.21587 * 120.00154 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99758 * 180.02562 * 9 8 7 12 12 C 1.46499 * 119.99605 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47224 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.47114 * 300.00291 * 13 12 11 15 15 C 1.53000 * 109.46889 * 59.99852 * 13 12 11 16 16 C 1.50696 * 109.47625 * 179.97438 * 13 12 11 17 17 H 1.08005 * 119.99692 * 0.02562 * 16 13 12 18 18 C 1.37878 * 120.00326 * 179.97438 * 16 13 12 19 19 N 1.31513 * 119.99589 * 0.02562 * 18 16 13 20 20 Si 1.86801 * 119.99985 * 180.02562 * 18 16 13 21 21 H 1.48498 * 109.47029 * 90.00639 * 20 18 16 22 22 H 1.48505 * 109.46739 * 210.00349 * 20 18 16 23 23 H 1.48499 * 109.47324 * 330.00146 * 20 18 16 24 24 H 1.09010 * 109.46874 * 90.03209 * 1 2 3 25 25 H 1.09001 * 109.47525 * 210.02227 * 1 2 3 26 26 H 1.08999 * 109.47609 * 330.02940 * 1 2 3 27 27 H 1.07997 * 125.61808 * 179.97438 * 4 3 2 28 28 H 1.08993 * 109.46842 * 210.00401 * 7 6 2 29 29 H 1.08999 * 109.47191 * 330.00622 * 7 6 2 30 30 H 0.97001 * 119.99939 * 359.97438 * 8 7 6 31 31 H 0.96995 * 120.00388 * 359.97438 * 11 9 8 32 32 H 1.08996 * 109.47737 * 299.99560 * 12 11 9 33 33 H 1.09002 * 109.47439 * 59.99578 * 12 11 9 34 34 H 1.08998 * 109.47293 * 59.99486 * 14 13 12 35 35 H 1.08997 * 109.47149 * 179.97438 * 14 13 12 36 36 H 1.09002 * 109.46652 * 299.99546 * 14 13 12 37 37 H 1.08995 * 109.47296 * 60.00465 * 15 13 12 38 38 H 1.09005 * 109.47329 * 180.02562 * 15 13 12 39 39 H 1.09007 * 109.47290 * 300.00260 * 15 13 12 40 40 H 0.97005 * 119.99891 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0858 0.0000 4 6 3.5431 0.6949 0.0006 5 8 3.5734 -0.6444 0.0015 6 6 2.2998 -1.0844 0.0005 7 6 1.8494 -2.5226 0.0017 8 7 1.7031 -2.9895 -1.3793 9 6 1.3065 -4.2540 -1.6246 10 8 1.0706 -5.0074 -0.6999 11 7 1.1724 -4.6837 -2.8950 12 6 0.7419 -6.0584 -3.1616 13 6 0.6704 -6.2864 -4.6728 14 6 -0.3326 -5.3092 -5.2892 15 6 2.0517 -6.0559 -5.2892 16 6 0.2282 -7.7007 -4.9471 17 1 0.0186 -8.3699 -4.1257 18 6 0.0901 -8.1400 -6.2467 19 7 0.3449 -7.3250 -7.2469 20 14 -0.4588 -9.8929 -6.5867 21 1 -1.9403 -9.9391 -6.6764 22 1 0.1294 -10.3558 -7.8693 23 1 -0.0017 -10.7773 -5.4848 24 1 -0.3633 -0.0006 -1.0278 25 1 -0.3634 -0.8898 0.5142 26 1 -0.3634 0.8902 0.5134 27 1 4.4065 1.3436 0.0003 28 1 2.5902 -3.1348 0.5157 29 1 0.8916 -2.6029 0.5158 30 1 1.8909 -2.3883 -2.1170 31 1 1.3610 -4.0828 -3.6327 32 1 1.4562 -6.7546 -2.7222 33 1 -0.2423 -6.2225 -2.7227 34 1 -0.0123 -4.2864 -5.0908 35 1 -0.3832 -5.4714 -6.3658 36 1 -1.3166 -5.4735 -4.8500 37 1 2.7663 -6.7521 -4.8501 38 1 2.0007 -6.2179 -6.3659 39 1 2.3720 -5.0331 -5.0908 40 1 0.2474 -7.6340 -8.1613 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922835539.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:48 Heat of formation + Delta-G solvation = -14.256341 kcal Electronic energy + Delta-G solvation = -21845.445468 eV Core-core repulsion = 18469.045624 eV Total energy + Delta-G solvation = -3376.399843 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.67227 -39.64744 -36.61560 -35.53089 -34.92062 -33.30731 -31.90607 -30.75002 -28.56448 -26.18032 -25.72621 -25.41430 -24.41199 -22.52078 -21.14811 -20.72729 -18.80299 -18.42526 -17.33192 -16.98193 -15.90351 -15.82617 -15.64734 -14.92849 -14.76014 -14.35458 -13.78212 -13.63585 -13.51499 -13.41595 -13.05742 -12.86848 -12.49008 -12.33365 -12.18518 -11.38819 -11.31421 -11.20141 -10.87574 -10.83898 -10.69188 -10.38813 -10.22250 -9.94900 -9.63465 -9.34149 -9.14103 -9.05844 -8.79302 -8.42443 -8.24006 -6.02316 -4.12304 1.01903 2.29583 2.40194 3.15232 3.28491 3.35539 3.40009 3.55271 3.82021 4.37389 4.38611 4.52495 4.69123 4.91962 5.18961 5.24602 5.31742 5.45590 5.47779 5.66560 5.79174 6.03425 6.18623 6.35485 6.40946 6.50401 6.78049 6.82486 6.88609 7.02725 7.06067 7.23315 7.37204 7.38635 7.55739 7.69735 8.00937 8.12047 8.36074 8.41707 8.87080 8.95822 9.53556 10.99128 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.037298 B = 0.003062 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.532183 B = 9142.306507 C = 9240.993760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.012 3.988 3 N -0.489 5.489 4 C 0.179 3.821 5 O -0.197 6.197 6 C -0.067 4.067 7 C 0.231 3.769 8 N -0.753 5.753 9 C 0.701 3.299 10 O -0.597 6.597 11 N -0.730 5.730 12 C 0.150 3.850 13 C 0.056 3.944 14 C -0.130 4.130 15 C -0.130 4.130 16 C -0.506 4.506 17 H 0.058 0.942 18 C 0.066 3.934 19 N -0.886 5.886 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.251 0.749 28 H 0.084 0.916 29 H 0.099 0.901 30 H 0.396 0.604 31 H 0.394 0.606 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.005 0.995 35 H 0.085 0.915 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.085 0.915 39 H 0.005 0.995 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.396 15.389 10.792 19.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.109 4.109 3 N -0.218 5.218 4 C -0.048 4.048 5 O -0.083 6.083 6 C -0.120 4.120 7 C 0.106 3.894 8 N -0.411 5.411 9 C 0.401 3.599 10 O -0.476 6.476 11 N -0.384 5.384 12 C 0.027 3.973 13 C 0.055 3.945 14 C -0.188 4.188 15 C -0.188 4.188 16 C -0.544 4.544 17 H 0.076 0.924 18 C -0.135 4.135 19 N -0.525 5.525 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 H 0.098 0.902 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.267 0.733 28 H 0.102 0.898 29 H 0.117 0.883 30 H 0.230 0.770 31 H 0.229 0.771 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.024 0.976 35 H 0.103 0.897 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.104 0.896 39 H 0.024 0.976 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.015 15.222 11.438 19.459 hybrid contribution 0.351 -0.800 -0.930 1.276 sum 4.366 14.422 10.508 18.371 Atomic orbital electron populations 1.20212 0.86116 1.03593 1.03437 1.21654 0.98185 0.87411 1.03664 1.70424 1.01416 1.31657 1.18322 1.28106 0.97623 0.79366 0.99678 1.84468 1.30014 1.24549 1.69270 1.23157 0.80982 0.97684 1.10171 1.19244 1.01776 0.84021 0.84340 1.45135 1.75522 1.12982 1.07456 1.15980 0.78412 0.81175 0.84361 1.90900 1.58182 1.54991 1.43540 1.45510 1.71840 1.16286 1.04803 1.21616 0.98271 0.78275 0.99129 1.18365 0.93103 0.95734 0.87275 1.21821 0.97834 0.94488 1.04614 1.21823 0.96864 0.95468 1.04611 1.20990 1.45419 0.95809 0.92215 0.92372 1.24879 0.95046 0.97426 0.96165 1.69807 1.49030 1.34863 0.98789 0.86567 0.78780 0.84854 0.77650 1.20711 1.21294 1.19878 0.90234 0.90287 0.90450 0.73315 0.89825 0.88279 0.77032 0.77106 0.92854 0.92822 0.97576 0.89651 0.95420 0.95430 0.89648 0.97595 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.22 36.00 0.37 -0.28 16 2 C 0.01 0.12 7.11 -82.81 -0.59 -0.47 16 3 N -0.49 -5.26 11.30 -11.18 -0.13 -5.38 16 4 C 0.18 1.46 13.23 52.10 0.69 2.15 16 5 O -0.20 -2.01 10.77 5.38 0.06 -1.95 16 6 C -0.07 -0.70 6.75 -35.69 -0.24 -0.94 16 7 C 0.23 2.59 6.01 -5.19 -0.03 2.56 16 8 N -0.75 -9.62 5.55 -66.41 -0.37 -9.99 16 9 C 0.70 12.05 8.57 -86.92 -0.74 11.30 16 10 O -0.60 -12.47 16.34 5.29 0.09 -12.38 16 11 N -0.73 -12.85 4.96 -65.23 -0.32 -13.18 16 12 C 0.15 3.17 4.50 -4.04 -0.02 3.15 16 13 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 14 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 15 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 16 C -0.51 -13.17 8.01 -34.44 -0.28 -13.45 16 17 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 18 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 19 N -0.89 -23.50 9.35 55.43 0.52 -22.98 16 20 Si 0.89 20.64 29.54 -169.99 -5.02 15.61 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 24 H 0.08 0.65 8.14 -51.92 -0.42 0.22 16 25 H 0.08 0.60 7.17 -51.93 -0.37 0.22 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.25 0.75 8.06 -52.49 -0.42 0.33 16 28 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.10 1.06 7.17 -51.93 -0.37 0.68 16 30 H 0.40 4.34 8.48 -40.82 -0.35 4.00 16 31 H 0.39 6.25 6.18 -40.82 -0.25 6.00 16 32 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 35 H 0.08 2.11 6.07 -51.93 -0.32 1.80 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 2.12 6.07 -51.93 -0.32 1.80 16 39 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 40 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 LS Contribution 331.30 15.07 4.99 4.99 Total: -1.00 -30.96 331.30 -6.21 -37.16 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -5.61 Total: 6.42 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -0.41 Total: 1.67 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: -0.30 Total: -51.52 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: 0.14 Total: -14.33 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.96 -6.21 -37.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922835539.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.907 kcal (2) G-P(sol) polarization free energy of solvation -30.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds