Wall clock time and date at job start Tue Mar 31 2020 06:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.29948 * 126.29451 * 2 1 4 4 O 1.21295 * 110.25315 * 179.84252 * 3 2 1 5 5 C 1.33636 * 109.81507 * 0.42731 * 4 3 2 6 6 C 1.50694 * 126.55410 * 179.71495 * 5 4 3 7 7 H 1.09001 * 109.46533 * 165.05149 * 6 5 4 8 8 C 1.53045 * 109.46447 * 285.02521 * 6 5 4 9 9 C 1.53119 * 109.27927 * 179.19550 * 8 6 5 10 10 C 1.53116 * 109.15958 * 302.34677 * 9 8 6 11 11 C 1.53042 * 109.28013 * 57.65546 * 10 9 8 12 12 N 1.46840 * 109.46484 * 45.08154 * 6 5 4 13 13 C 1.46898 * 111.00029 * 54.14333 * 12 6 5 14 14 C 1.52994 * 109.47324 * 76.11074 * 13 12 6 15 15 H 1.08999 * 109.47035 * 54.83451 * 14 13 12 16 16 O 1.42903 * 109.47214 * 294.83577 * 14 13 12 17 17 C 1.50699 * 109.47395 * 174.83276 * 14 13 12 18 18 H 1.08003 * 119.99914 * 0.02562 * 17 14 13 19 19 C 1.37875 * 120.00286 * 179.97438 * 17 14 13 20 20 N 1.31520 * 119.99759 * 359.97438 * 19 17 14 21 21 Si 1.86796 * 120.00450 * 180.02562 * 19 17 14 22 22 H 1.48496 * 109.47165 * 89.99843 * 21 19 17 23 23 H 1.48501 * 109.47345 * 210.00042 * 21 19 17 24 24 H 1.48508 * 109.46887 * 329.99910 * 21 19 17 25 25 N 1.31139 * 106.89508 * 359.74028 * 5 4 3 26 26 H 1.08996 * 109.47228 * 269.68743 * 1 2 3 27 27 H 1.08992 * 109.47742 * 149.68114 * 1 2 3 28 28 H 1.09008 * 109.46785 * 29.68458 * 1 2 3 29 29 H 1.09004 * 109.49909 * 299.13739 * 8 6 5 30 30 H 1.09002 * 109.49848 * 59.21646 * 8 6 5 31 31 H 1.08996 * 109.52211 * 62.25056 * 9 8 6 32 32 H 1.09000 * 109.52102 * 182.44252 * 9 8 6 33 33 H 1.09005 * 109.50290 * 177.59707 * 10 9 8 34 34 H 1.09000 * 109.50657 * 297.71117 * 10 9 8 35 35 H 1.09003 * 109.45903 * 60.83845 * 11 10 9 36 36 H 1.09003 * 109.46260 * 180.80222 * 11 10 9 37 37 H 1.09003 * 109.47025 * 196.11445 * 13 12 6 38 38 H 1.09004 * 109.47015 * 316.10866 * 13 12 6 39 39 H 0.96699 * 113.99583 * 299.99734 * 16 14 13 40 40 H 0.97000 * 120.00178 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7122 0.0031 5 6 3.5299 -0.6213 -0.0039 6 6 4.7968 -1.4371 -0.0090 7 1 4.5648 -2.4699 0.2509 8 6 5.4272 -1.3914 -1.4029 9 6 6.7244 -2.2050 -1.3980 10 6 7.6680 -1.6398 -0.3329 11 6 6.9728 -1.6783 1.0299 12 7 5.7382 -0.8852 0.9736 13 6 5.1157 -0.7852 2.3004 14 6 5.0464 -2.1746 2.9373 15 1 6.0426 -2.6166 2.9542 16 8 4.1695 -3.0054 2.1737 17 6 4.5255 -2.0559 4.3464 18 1 4.2691 -1.0864 4.7475 19 6 4.3752 -3.1850 5.1233 20 7 4.6860 -4.3657 4.6344 21 14 3.7289 -3.0380 6.8697 22 1 2.2482 -3.1494 6.8605 23 1 4.3021 -4.1255 7.7028 24 1 4.1229 -1.7220 7.4341 25 7 2.3029 -1.0841 -0.0060 26 1 -0.3633 -0.0056 1.0276 27 1 -0.3634 -0.8870 -0.5187 28 1 -0.3633 0.8929 -0.5090 29 1 4.7343 -1.8156 -2.1296 30 1 5.6464 -0.3575 -1.6693 31 1 6.5000 -3.2469 -1.1699 32 1 7.1991 -2.1394 -2.3770 33 1 8.5763 -2.2413 -0.2952 34 1 7.9232 -0.6098 -0.5823 35 1 6.7304 -2.7100 1.2849 36 1 7.6368 -1.2633 1.7883 37 1 5.7105 -0.1253 2.9320 38 1 4.1084 -0.3810 2.1997 39 1 3.2635 -2.6724 2.1159 40 1 4.5807 -5.1600 5.1810 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930476878.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:02 Heat of formation + Delta-G solvation = 16.975649 kcal Electronic energy + Delta-G solvation = -23633.883324 eV Core-core repulsion = 20258.837801 eV Total energy + Delta-G solvation = -3375.045523 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.26406 -39.24612 -35.74936 -35.72074 -33.31215 -32.76296 -32.16330 -30.39637 -28.85312 -28.23226 -25.38712 -24.19800 -23.12989 -22.98827 -20.99953 -20.75028 -19.07051 -17.79472 -17.19399 -16.93435 -15.67319 -15.04971 -14.70780 -14.63941 -14.45066 -13.98792 -13.81774 -13.73854 -13.46902 -13.13592 -12.84946 -12.56393 -12.40599 -12.20568 -12.00168 -11.31259 -11.21650 -11.04887 -10.97057 -10.91421 -10.76336 -10.67999 -10.52392 -10.41004 -10.25855 -10.02482 -9.61330 -9.47886 -8.63817 -8.61923 -7.37308 -6.05725 -4.24498 1.45020 2.49615 3.15389 3.24204 3.31463 3.34329 3.75873 4.19534 4.34444 4.51892 4.92099 5.01669 5.11833 5.20041 5.29832 5.38358 5.43459 5.50642 5.65022 5.74566 5.82364 5.84371 5.91661 6.02106 6.07013 6.11590 6.17207 6.18953 6.22927 6.33139 6.37543 6.39860 6.62529 6.77504 7.28002 7.41133 7.64000 7.78669 8.12211 8.48828 8.76449 9.24047 9.51104 10.97461 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013734 B = 0.007219 C = 0.005253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.208336 B = 3877.486031 C = 5328.630500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.162 3.838 3 N -0.397 5.397 4 O 0.084 5.916 5 C 0.214 3.786 6 C 0.161 3.839 7 H 0.123 0.877 8 C -0.110 4.110 9 C -0.116 4.116 10 C -0.118 4.118 11 C 0.053 3.947 12 N -0.530 5.530 13 C 0.023 3.977 14 C 0.197 3.803 15 H 0.067 0.933 16 O -0.562 6.562 17 C -0.573 4.573 18 H 0.054 0.946 19 C 0.081 3.919 20 N -0.858 5.858 21 Si 0.888 3.112 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.273 1.273 25 N -0.482 5.482 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.052 0.948 39 H 0.347 0.653 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.070 5.596 -11.797 13.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.111 4.111 3 N -0.107 5.107 4 O 0.026 5.974 5 C -0.007 4.007 6 C 0.051 3.949 7 H 0.140 0.860 8 C -0.149 4.149 9 C -0.154 4.154 10 C -0.156 4.156 11 C -0.075 4.075 12 N -0.255 5.255 13 C -0.104 4.104 14 C 0.138 3.862 15 H 0.084 0.916 16 O -0.366 6.366 17 C -0.612 4.612 18 H 0.073 0.927 19 C -0.125 4.125 20 N -0.493 5.493 21 Si 0.715 3.285 22 H -0.206 1.206 23 H -0.210 1.210 24 H -0.198 1.198 25 N -0.216 5.216 26 H 0.106 0.894 27 H 0.108 0.892 28 H 0.101 0.899 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.071 0.929 39 H 0.191 0.809 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.130 6.030 -11.986 13.418 hybrid contribution -1.034 -0.356 1.602 1.940 sum -0.904 5.673 -10.384 11.867 Atomic orbital electron populations 1.20078 0.83363 1.04121 1.04223 1.25850 1.00436 0.83875 1.00937 1.74591 0.89787 1.24267 1.22069 1.85314 1.21685 1.25084 1.65268 1.28734 0.96574 0.81665 0.93677 1.20560 0.83348 0.96364 0.94658 0.86031 1.21667 0.97344 1.01690 0.94211 1.21530 0.95035 0.99691 0.99147 1.21638 0.97796 1.01434 0.94687 1.22129 0.90612 0.97642 0.97084 1.62383 1.04823 1.50603 1.07657 1.23121 0.98044 1.01217 0.88039 1.20067 0.91974 0.84831 0.89292 0.91552 1.86484 1.22008 1.53974 1.74108 1.21583 1.47273 0.93504 0.98803 0.92729 1.25014 0.94262 0.95321 0.97911 1.70059 1.45329 0.97798 1.36134 0.86688 0.79226 0.77875 0.84709 1.20565 1.21035 1.19810 1.71938 0.99562 1.29127 1.20966 0.89419 0.89227 0.89950 0.91336 0.90881 0.91487 0.91632 0.91530 0.91372 0.92447 0.90367 0.90262 0.92926 0.80904 0.92966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.69 10.51 36.00 0.38 -0.31 16 2 C 0.16 2.63 8.22 -156.37 -1.28 1.35 16 3 N -0.40 -6.95 12.16 30.90 0.38 -6.57 16 4 O 0.08 1.49 11.15 18.12 0.20 1.70 16 5 C 0.21 3.72 5.38 -13.06 -0.07 3.65 16 6 C 0.16 2.64 1.91 -68.88 -0.13 2.51 16 7 H 0.12 2.28 5.75 -51.93 -0.30 1.98 16 8 C -0.11 -1.45 5.36 -26.65 -0.14 -1.59 16 9 C -0.12 -1.37 6.00 -26.61 -0.16 -1.53 16 10 C -0.12 -1.45 6.09 -26.65 -0.16 -1.61 16 11 C 0.05 0.84 4.48 -3.83 -0.02 0.82 16 12 N -0.53 -9.10 4.69 -228.08 -1.07 -10.16 16 13 C 0.02 0.47 5.04 -3.83 -0.02 0.45 16 14 C 0.20 4.73 2.27 -27.89 -0.06 4.67 16 15 H 0.07 1.71 6.12 -51.93 -0.32 1.40 16 16 O -0.56 -13.81 9.91 -35.23 -0.35 -14.15 16 17 C -0.57 -15.54 8.76 -34.44 -0.30 -15.84 16 18 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 19 C 0.08 2.25 5.40 -17.82 -0.10 2.16 16 20 N -0.86 -24.83 12.84 55.43 0.71 -24.12 16 21 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 25 N -0.48 -8.54 11.55 -9.87 -0.11 -8.65 16 26 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 1.06 6.47 -51.93 -0.34 0.72 16 36 H 0.08 1.22 8.12 -51.93 -0.42 0.80 16 37 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 38 H 0.05 1.13 6.26 -51.93 -0.33 0.80 16 39 H 0.35 8.37 9.04 45.56 0.41 8.78 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 321.81 15.07 4.85 4.85 Total: -1.00 -30.11 321.81 -7.54 -37.65 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -5.06 Total: 8.59 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -2.07 Total: -5.27 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: -0.10 Total: -49.51 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -0.15 Total: -12.46 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.11 -7.54 -37.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930476878.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.631 kcal (2) G-P(sol) polarization free energy of solvation -30.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds