Wall clock time and date at job start Tue Mar 31 2020 06:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.29938 * 126.29107 * 2 1 4 4 O 1.21299 * 110.25277 * 179.97438 * 3 2 1 5 5 C 1.33633 * 109.81301 * 359.97438 * 4 3 2 6 6 C 1.50708 * 126.55153 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.45966 * 195.05007 * 6 5 4 8 8 C 1.53028 * 109.46100 * 75.08319 * 6 5 4 9 9 C 1.53114 * 109.28006 * 180.80492 * 8 6 5 10 10 C 1.53118 * 109.16268 * 57.65224 * 9 8 6 11 11 C 1.53036 * 109.27554 * 302.35140 * 10 9 8 12 12 N 1.46841 * 109.52644 * 59.17791 * 11 10 9 13 13 C 1.46902 * 110.99993 * 174.16062 * 12 11 10 14 14 C 1.53001 * 109.47217 * 294.20698 * 13 12 11 15 15 H 1.09007 * 109.46922 * 59.99765 * 14 13 12 16 16 O 1.42898 * 109.46941 * 300.00128 * 14 13 12 17 17 C 1.50694 * 109.47168 * 180.02562 * 14 13 12 18 18 H 1.08000 * 120.00563 * 0.02562 * 17 14 13 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 14 13 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 14 22 22 H 1.48506 * 109.46985 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47276 * 299.99832 * 21 19 17 24 24 H 1.48498 * 109.47150 * 60.00043 * 21 19 17 25 25 N 1.31126 * 106.89909 * 0.23378 * 5 4 3 26 26 H 1.09001 * 109.47472 * 89.97876 * 1 2 3 27 27 H 1.09004 * 109.47444 * 209.97790 * 1 2 3 28 28 H 1.09004 * 109.47509 * 329.98162 * 1 2 3 29 29 H 1.09005 * 109.50456 * 300.74763 * 8 6 5 30 30 H 1.09003 * 109.50787 * 60.81961 * 8 6 5 31 31 H 1.09001 * 109.52534 * 177.56160 * 9 8 6 32 32 H 1.09002 * 109.52599 * 297.74892 * 9 8 6 33 33 H 1.08995 * 109.49981 * 62.28758 * 10 9 8 34 34 H 1.08999 * 109.50477 * 182.40711 * 10 9 8 35 35 H 1.08999 * 109.46352 * 299.15782 * 11 10 9 36 36 H 1.09001 * 109.45775 * 179.19545 * 11 10 9 37 37 H 1.09002 * 109.46978 * 174.20968 * 13 12 11 38 38 H 1.08998 * 109.47251 * 54.20486 * 13 12 11 39 39 H 0.96698 * 114.00284 * 299.99736 * 16 14 13 40 40 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2760 1.0473 0.0000 4 8 3.4418 0.7122 0.0005 5 6 3.5298 -0.6212 0.0015 6 6 4.7969 -1.4371 0.0018 7 1 4.5649 -2.4683 -0.2643 8 6 5.4269 -1.3998 1.3959 9 6 6.7241 -2.2132 1.3863 10 6 7.6680 -1.6416 0.3248 11 6 6.9729 -1.6718 -1.0383 12 7 5.7383 -0.8791 -0.9773 13 6 5.1161 -0.7711 -2.3037 14 6 6.0277 0.0356 -3.2305 15 1 6.9907 -0.4672 -3.3208 16 8 6.2221 1.3431 -2.6876 17 6 5.3891 0.1470 -4.5909 18 1 4.4288 -0.3113 -4.7759 19 6 6.0307 0.8341 -5.5996 20 7 7.1999 1.3926 -5.3742 21 14 5.2394 0.9715 -7.2861 22 1 6.1242 1.7546 -8.1857 23 1 5.0369 -0.3872 -7.8500 24 1 3.9278 1.6569 -7.1631 25 7 2.3030 -1.0842 -0.0036 26 1 -0.3634 0.0004 -1.0277 27 1 -0.3634 -0.8902 0.5135 28 1 -0.3634 0.8898 0.5141 29 1 5.6466 -0.3675 1.6685 30 1 4.7337 -1.8277 2.1201 31 1 7.1987 -2.1537 2.3658 32 1 6.4999 -3.2539 1.1519 33 1 7.9230 -0.6132 0.5805 34 1 8.5762 -2.2429 0.2836 35 1 6.7306 -2.7019 -1.2996 36 1 7.6370 -1.2523 -1.7939 37 1 4.1532 -0.2682 -2.2133 38 1 4.9678 -1.7684 -2.7178 39 1 5.4055 1.8494 -2.5792 40 1 7.6514 1.8757 -6.0840 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930476879.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:05 Heat of formation + Delta-G solvation = 16.205037 kcal Electronic energy + Delta-G solvation = -23215.419882 eV Core-core repulsion = 19840.340943 eV Total energy + Delta-G solvation = -3375.078939 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.37177 -39.14193 -35.88821 -35.67839 -33.48871 -32.80655 -32.05565 -30.52262 -28.95370 -28.25489 -25.42130 -24.28790 -23.21878 -23.11794 -21.09196 -20.30922 -19.47032 -17.87643 -17.37866 -16.82244 -15.73556 -15.12870 -14.88668 -14.59083 -14.37937 -14.02542 -13.78654 -13.68668 -13.53925 -13.13552 -13.06272 -12.84164 -12.52519 -12.19827 -12.14578 -11.38812 -11.28071 -11.14707 -11.00263 -10.90377 -10.87400 -10.85067 -10.66821 -10.47778 -10.29983 -10.03962 -9.62638 -9.01555 -8.56658 -8.15776 -7.83972 -6.01099 -4.19513 1.34499 2.34881 3.00905 3.28530 3.33797 3.35577 3.58900 4.07020 4.30326 4.44732 4.75555 4.85928 4.97987 5.18850 5.25493 5.26905 5.30258 5.33226 5.42803 5.60169 5.65670 5.71408 5.80352 5.88119 5.93779 5.98796 6.04247 6.09324 6.16520 6.19663 6.38861 6.43362 6.53762 6.73252 7.32451 7.37951 7.73194 7.84311 8.18154 8.37866 8.83111 9.45683 9.61595 11.02912 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013961 B = 0.006442 C = 0.004771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.083242 B = 4345.307609 C = 5866.843400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.158 3.842 3 N -0.387 5.387 4 O 0.101 5.899 5 C 0.207 3.793 6 C 0.173 3.827 7 H 0.079 0.921 8 C -0.110 4.110 9 C -0.116 4.116 10 C -0.119 4.119 11 C 0.058 3.942 12 N -0.518 5.518 13 C 0.029 3.971 14 C 0.241 3.759 15 H 0.058 0.942 16 O -0.551 6.551 17 C -0.577 4.577 18 H 0.052 0.948 19 C 0.082 3.918 20 N -0.857 5.857 21 Si 0.888 3.112 22 H -0.285 1.285 23 H -0.276 1.276 24 H -0.276 1.276 25 N -0.492 5.492 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.030 0.970 36 H 0.095 0.905 37 H 0.055 0.945 38 H 0.032 0.968 39 H 0.343 0.657 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.414 -6.887 13.621 16.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.114 4.114 3 N -0.095 5.095 4 O 0.042 5.958 5 C -0.014 4.014 6 C 0.063 3.937 7 H 0.097 0.903 8 C -0.148 4.148 9 C -0.153 4.153 10 C -0.157 4.157 11 C -0.069 4.069 12 N -0.244 5.244 13 C -0.098 4.098 14 C 0.183 3.817 15 H 0.076 0.924 16 O -0.353 6.353 17 C -0.615 4.615 18 H 0.070 0.930 19 C -0.124 4.124 20 N -0.492 5.492 21 Si 0.715 3.285 22 H -0.211 1.211 23 H -0.202 1.202 24 H -0.202 1.202 25 N -0.227 5.227 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.048 0.952 36 H 0.113 0.887 37 H 0.073 0.927 38 H 0.050 0.950 39 H 0.186 0.814 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.144 -5.992 13.686 15.801 hybrid contribution -1.280 -0.660 -1.450 2.044 sum -6.424 -6.652 12.235 15.337 Atomic orbital electron populations 1.20079 0.83252 1.04209 1.04197 1.25822 1.00440 0.83770 1.01401 1.74644 0.89727 1.24076 1.21029 1.85378 1.21522 1.24428 1.64516 1.28540 0.96153 0.82317 0.94364 1.20172 0.84016 0.93326 0.96235 0.90307 1.21658 0.97206 1.02566 0.93415 1.21552 0.95164 0.98944 0.99688 1.21639 0.97590 1.02270 0.94181 1.22145 0.91516 0.94904 0.98353 1.62061 1.04168 1.50249 1.07875 1.23194 0.99044 0.99965 0.87631 1.19286 0.93796 0.80909 0.87681 0.92436 1.86546 1.34126 1.28672 1.85929 1.21583 1.06095 1.37187 0.96645 0.93020 1.24986 0.94509 0.94518 0.98405 1.70063 1.13868 1.32665 1.32608 0.86752 0.79433 0.78195 0.84096 1.21075 1.20190 1.20195 1.71855 0.99630 1.29661 1.21558 0.89461 0.89353 0.89712 0.90022 0.91287 0.91325 0.92070 0.90497 0.91441 0.95150 0.88667 0.92699 0.94996 0.81359 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.63 10.51 36.00 0.38 -0.25 16 2 C 0.16 2.47 8.22 -156.38 -1.28 1.19 16 3 N -0.39 -6.79 12.16 30.89 0.38 -6.42 16 4 O 0.10 1.81 11.06 18.13 0.20 2.01 16 5 C 0.21 3.42 5.49 -13.06 -0.07 3.35 16 6 C 0.17 2.56 2.39 -68.88 -0.16 2.39 16 7 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 8 C -0.11 -1.30 5.35 -26.66 -0.14 -1.44 16 9 C -0.12 -1.19 6.00 -26.61 -0.16 -1.35 16 10 C -0.12 -1.44 6.09 -26.65 -0.16 -1.61 16 11 C 0.06 0.89 5.29 -3.84 -0.02 0.87 16 12 N -0.52 -8.93 4.35 -228.08 -0.99 -9.92 16 13 C 0.03 0.60 4.35 -3.82 -0.02 0.58 16 14 C 0.24 6.04 2.70 -27.89 -0.08 5.97 16 15 H 0.06 1.54 6.43 -51.92 -0.33 1.21 16 16 O -0.55 -14.37 12.59 -35.23 -0.44 -14.82 16 17 C -0.58 -15.93 8.76 -34.44 -0.30 -16.23 16 18 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 19 C 0.08 2.31 5.40 -17.82 -0.10 2.22 16 20 N -0.86 -25.24 12.84 55.43 0.71 -24.53 16 21 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 N -0.49 -8.11 11.55 -9.88 -0.11 -8.22 16 26 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.10 1.70 6.21 -51.93 -0.32 1.38 16 37 H 0.05 1.20 6.37 -51.93 -0.33 0.87 16 38 H 0.03 0.66 8.12 -51.93 -0.42 0.23 16 39 H 0.34 8.43 9.04 45.56 0.41 8.84 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 327.76 15.07 4.94 4.94 Total: -1.00 -31.53 327.76 -7.65 -39.18 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -5.19 Total: 5.73 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -2.12 Total: -4.31 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: -0.02 Total: -49.08 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -0.24 Total: -12.80 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.53 -7.65 -39.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930476879.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.389 kcal (2) G-P(sol) polarization free energy of solvation -31.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds