Wall clock time and date at job start Tue Mar 31 2020 06:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34328 * 126.44658 * 2 1 4 4 N 1.34477 * 107.67295 * 179.76729 * 3 2 1 5 5 C 1.30260 * 108.69507 * 0.41683 * 4 3 2 6 6 C 1.50701 * 125.61558 * 179.84061 * 5 4 3 7 7 C 1.52997 * 109.47212 * 89.69574 * 6 5 4 8 8 C 1.52992 * 109.47482 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.47592 * 179.97438 * 8 7 6 10 10 O 1.21286 * 119.99758 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00201 * 179.97438 * 9 8 7 12 12 C 1.46499 * 119.99872 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47012 * 180.02562 * 12 11 9 14 14 N 1.46508 * 109.47151 * 180.02562 * 13 12 11 15 15 C 1.36939 * 119.99829 * 180.02562 * 14 13 12 16 16 H 1.07995 * 119.99958 * 359.97438 * 15 14 13 17 17 C 1.38811 * 119.99349 * 179.97438 * 15 14 13 18 18 N 1.31611 * 120.00650 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99352 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47249 * 359.97438 * 19 17 15 21 21 H 1.48508 * 109.47087 * 120.00026 * 19 17 15 22 22 H 1.48502 * 109.46841 * 239.99844 * 19 17 15 23 23 O 1.33962 * 108.76467 * 359.58084 * 5 4 3 24 24 H 1.08995 * 109.47273 * 269.98038 * 1 2 3 25 25 H 1.09006 * 109.46913 * 29.97663 * 1 2 3 26 26 H 1.08999 * 109.47563 * 149.97579 * 1 2 3 27 27 H 1.08006 * 126.16596 * 0.02562 * 3 2 1 28 28 H 1.09002 * 109.47060 * 209.69630 * 6 5 4 29 29 H 1.09001 * 109.47380 * 329.69717 * 6 5 4 30 30 H 1.09002 * 109.47153 * 299.99998 * 7 6 5 31 31 H 1.08998 * 109.47533 * 59.99628 * 7 6 5 32 32 H 1.09002 * 109.47103 * 300.00247 * 8 7 6 33 33 H 1.09001 * 109.47066 * 60.00169 * 8 7 6 34 34 H 0.96992 * 120.00336 * 0.02562 * 11 9 8 35 35 H 1.09002 * 109.47391 * 300.00314 * 12 11 9 36 36 H 1.09001 * 109.47271 * 60.00533 * 12 11 9 37 37 H 1.09001 * 109.47230 * 299.99452 * 13 12 11 38 38 H 1.08988 * 109.47529 * 60.00003 * 13 12 11 39 39 H 0.96998 * 119.99681 * 359.97438 * 14 13 12 40 40 H 0.97006 * 120.00348 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0805 0.0000 4 7 3.5782 0.6478 0.0052 5 6 3.5764 -0.6548 -0.0006 6 6 4.8004 -1.5341 -0.0011 7 6 5.2150 -1.8319 1.4412 8 6 6.4571 -2.7250 1.4408 9 6 6.8659 -3.0178 2.8614 10 8 6.2263 -2.5578 3.7835 11 7 7.9416 -3.7918 3.1073 12 6 8.3393 -4.0759 4.4883 13 6 9.5814 -4.9692 4.4878 14 7 9.9787 -5.2539 5.8690 15 6 11.0722 -6.0394 6.1187 16 1 11.6414 -6.4494 5.2976 17 6 11.4489 -6.3087 7.4273 18 7 10.7555 -5.8086 8.4280 19 14 12.9402 -7.3809 7.7681 20 1 13.5415 -7.8158 6.4818 21 1 13.9402 -6.6055 8.5454 22 1 12.5241 -8.5742 8.5479 23 8 2.3075 -1.0840 -0.0004 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3633 0.8903 -0.5135 26 1 -0.3634 -0.8897 -0.5142 27 1 1.9822 2.1113 0.0004 28 1 4.5761 -2.4688 -0.5151 29 1 5.6146 -1.0232 -0.5151 30 1 5.4393 -0.8972 1.9551 31 1 4.4008 -2.3427 1.9552 32 1 6.2324 -3.6597 0.9270 33 1 7.2715 -2.2145 0.9267 34 1 8.4529 -4.1600 2.3699 35 1 8.5647 -3.1409 5.0012 36 1 7.5250 -4.5857 5.0033 37 1 9.3563 -5.9043 3.9749 38 1 10.3955 -4.4592 3.9730 39 1 9.4676 -4.8853 6.6064 40 1 11.0186 -5.9971 9.3425 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129098744.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:13 Heat of formation + Delta-G solvation = -21.732925 kcal Electronic energy + Delta-G solvation = -20313.117892 eV Core-core repulsion = 16936.393840 eV Total energy + Delta-G solvation = -3376.724052 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.61358 -39.62883 -35.95861 -35.34935 -34.84339 -33.82541 -32.68342 -31.27616 -29.65984 -27.64454 -25.98782 -23.83130 -22.87311 -22.24516 -21.44448 -21.09866 -20.16031 -17.55081 -17.22731 -17.04676 -16.65584 -16.11086 -15.57584 -15.06373 -14.76857 -14.56638 -14.41559 -13.78617 -13.69732 -13.60196 -13.41730 -13.16673 -12.96308 -12.78228 -12.43294 -12.31060 -11.82895 -11.53587 -11.40371 -11.11499 -11.05770 -10.83205 -10.81270 -10.79808 -10.09628 -9.88354 -9.68299 -8.99154 -8.95235 -8.82243 -6.99981 -5.80267 -3.11058 1.12304 2.31406 2.39729 2.73817 3.26622 3.41696 3.47073 3.49525 3.74485 4.38743 4.52693 4.58487 4.59834 4.64964 4.75658 4.87437 4.95723 5.06029 5.14757 5.20570 5.25359 5.34431 5.49745 5.54662 5.59788 5.70296 5.77574 5.82869 5.95977 5.98381 6.05457 6.15632 6.49562 6.70244 6.75005 7.45276 7.62813 7.65778 8.33713 8.37599 9.48619 10.03590 10.38214 11.42353 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.058713 B = 0.001953 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.779533 B =14335.677645 C =14537.188012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.053 4.053 3 C -0.043 4.043 4 N -0.481 5.481 5 C 0.195 3.805 6 C -0.023 4.023 7 C -0.102 4.102 8 C -0.139 4.139 9 C 0.508 3.492 10 O -0.542 6.542 11 N -0.724 5.724 12 C 0.110 3.890 13 C 0.145 3.855 14 N -0.730 5.730 15 C -0.244 4.244 16 H 0.073 0.927 17 C -0.013 4.013 18 N -0.930 5.930 19 Si 0.910 3.090 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 O -0.201 6.201 24 H 0.084 0.916 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.182 0.818 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.400 0.600 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.024 0.976 38 H 0.024 0.976 39 H 0.386 0.614 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.070 10.328 -22.276 30.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.106 4.106 3 C -0.182 4.182 4 N -0.209 5.209 5 C -0.012 4.012 6 C -0.061 4.061 7 C -0.141 4.141 8 C -0.179 4.179 9 C 0.294 3.706 10 O -0.420 6.420 11 N -0.376 5.376 12 C -0.014 4.014 13 C 0.016 3.984 14 N -0.375 5.375 15 C -0.375 4.375 16 H 0.090 0.910 17 C -0.209 4.209 18 N -0.578 5.578 19 Si 0.741 3.259 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 O -0.088 6.088 24 H 0.103 0.897 25 H 0.110 0.890 26 H 0.096 0.904 27 H 0.200 0.800 28 H 0.113 0.887 29 H 0.126 0.874 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.234 0.766 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.220 0.780 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -17.844 10.871 -21.609 30.059 hybrid contribution 0.288 -0.948 0.201 1.011 sum -17.556 9.923 -21.407 29.410 Atomic orbital electron populations 1.20270 0.84002 1.04297 1.03907 1.23485 0.95108 0.84637 1.07405 1.23087 0.87850 1.00370 1.06889 1.70447 1.23078 1.09251 1.18164 1.26251 0.84295 0.90356 1.00266 1.20176 0.89082 0.97381 0.99499 1.21325 0.97442 1.01180 0.94105 1.21625 0.99510 1.01978 0.94766 1.20572 0.80301 0.78347 0.91397 1.90729 1.53313 1.51383 1.46530 1.45959 1.30155 1.51843 1.09629 1.21573 0.98012 1.00213 0.81587 1.20758 0.92575 0.95373 0.89645 1.42207 1.33903 1.60843 1.00557 1.19244 1.03568 1.22787 0.91909 0.90952 1.24788 0.99523 1.01051 0.95532 1.69677 1.41062 1.48848 0.98250 0.86076 0.82220 0.79806 0.77792 1.20504 1.21765 1.21779 1.84391 1.17926 1.36613 1.69881 0.89715 0.88998 0.90356 0.80049 0.88710 0.87380 0.90093 0.90573 0.88524 0.88411 0.76637 0.91343 0.91353 0.95818 0.95798 0.78011 0.93401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.31 10.43 36.00 0.38 0.06 16 2 C -0.05 -0.47 7.39 -35.69 -0.26 -0.74 16 3 C -0.04 -0.42 11.80 -17.77 -0.21 -0.63 16 4 N -0.48 -5.72 11.29 -11.10 -0.13 -5.85 16 5 C 0.19 2.06 7.60 -12.94 -0.10 1.96 16 6 C -0.02 -0.17 5.84 -27.88 -0.16 -0.33 16 7 C -0.10 -0.94 4.49 -26.74 -0.12 -1.06 16 8 C -0.14 -1.12 5.70 -27.89 -0.16 -1.28 16 9 C 0.51 6.79 7.83 -10.99 -0.09 6.70 16 10 O -0.54 -9.82 15.98 5.55 0.09 -9.73 16 11 N -0.72 -9.45 5.56 -60.29 -0.33 -9.78 16 12 C 0.11 1.89 5.79 -4.04 -0.02 1.86 16 13 C 0.14 2.82 6.37 -4.04 -0.03 2.79 16 14 N -0.73 -18.63 5.60 -59.91 -0.34 -18.96 16 15 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 16 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 17 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 18 N -0.93 -28.37 13.06 55.49 0.72 -27.65 16 19 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 O -0.20 -2.15 10.78 5.36 0.06 -2.09 16 24 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.18 1.21 8.06 -52.48 -0.42 0.78 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 31 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 32 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.40 3.90 8.47 -40.82 -0.35 3.56 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.02 0.46 8.14 -51.94 -0.42 0.03 16 39 H 0.39 10.46 7.67 -40.82 -0.31 10.14 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 347.97 15.07 5.24 5.24 Total: -1.00 -36.48 347.97 -6.84 -43.33 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -6.12 Total: 6.29 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -1.02 Total: 1.90 kcal Atomic # 7 Polarization: -62.17 SS G_CDS: -0.07 Total: -62.24 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.15 Total: -11.82 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -36.48 -6.84 -43.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129098744.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.593 kcal (2) G-P(sol) polarization free energy of solvation -36.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds