Wall clock time and date at job start Tue Mar 31 2020 05:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34225 * 116.99999 * 2 1 4 4 O 1.20827 * 120.00232 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99865 * 179.97438 * 3 2 1 6 6 C 1.55922 * 115.92424 * 297.93802 * 5 3 2 7 7 C 1.56801 * 104.22527 * 199.66411 * 6 5 3 8 8 C 1.55926 * 104.22294 * 359.97438 * 7 6 5 9 9 N 1.46496 * 115.92616 * 160.33217 * 8 7 6 10 10 C 1.34774 * 119.99544 * 62.06573 * 9 8 7 11 11 O 1.21279 * 120.00472 * 0.02562 * 10 9 8 12 12 C 1.50706 * 120.00020 * 180.02562 * 10 9 8 13 13 C 1.50698 * 109.47294 * 180.02562 * 12 10 9 14 14 H 1.08005 * 119.99819 * 359.97438 * 13 12 10 15 15 C 1.37875 * 120.00046 * 180.02562 * 13 12 10 16 16 N 1.31518 * 119.99944 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47454 * 59.99696 * 17 15 13 19 19 H 1.48506 * 109.47297 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46926 * 299.99488 * 17 15 13 21 21 C 1.55929 * 105.23278 * 289.83699 * 8 7 6 22 22 C 1.54582 * 104.64243 * 70.46476 * 21 8 7 23 23 C 1.56952 * 116.22462 * 179.97438 * 5 3 2 24 24 H 1.09001 * 109.47012 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46874 * 299.99793 * 1 2 3 26 26 H 1.08996 * 109.47206 * 59.99555 * 1 2 3 27 27 H 1.09003 * 110.39932 * 318.76193 * 6 5 3 28 28 H 1.09006 * 110.40448 * 81.17380 * 6 5 3 29 29 H 1.09004 * 110.34659 * 241.47712 * 7 6 5 30 30 H 1.09000 * 110.86377 * 118.78149 * 7 6 5 31 31 H 0.96994 * 120.00700 * 242.06692 * 9 8 7 32 32 H 1.09001 * 109.46953 * 299.99667 * 12 10 9 33 33 H 1.09000 * 109.47318 * 59.99264 * 12 10 9 34 34 H 0.96997 * 119.99752 * 180.02562 * 16 15 13 35 35 H 1.08991 * 110.40253 * 189.25462 * 21 8 7 36 36 H 1.08997 * 110.39950 * 311.67528 * 21 8 7 37 37 H 1.08998 * 110.40305 * 241.21066 * 22 21 8 38 38 H 1.09006 * 110.40297 * 118.79694 * 22 21 8 39 39 H 1.09000 * 112.02718 * 63.64958 * 23 5 3 40 40 H 1.08995 * 112.02725 * 297.12536 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.2810 0.6546 1.2399 7 6 5.7042 1.3126 1.2333 8 6 5.6854 2.2539 -0.0097 9 7 6.6913 3.3188 -0.0220 10 6 8.0024 3.0071 -0.0306 11 8 8.3496 1.8451 -0.0286 12 6 9.0374 4.1026 -0.0426 13 6 10.4151 3.4920 -0.0512 14 1 10.5298 2.4181 -0.0478 15 6 11.5291 4.3043 -0.0623 16 7 11.3893 5.6121 -0.0660 17 14 13.2368 3.5475 -0.0722 18 1 13.3969 2.7025 -1.2829 19 1 14.2567 4.6270 -0.0842 20 1 13.4147 2.7114 1.1421 21 6 5.6855 1.3019 -1.2446 22 6 4.2824 0.6532 -1.2380 23 6 4.1853 2.7171 -0.0001 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 3.7420 0.9045 2.1538 28 1 4.3629 -0.4268 1.1296 29 1 6.4741 0.5494 1.1197 30 1 5.8700 1.8883 2.1439 31 1 6.4138 4.2482 -0.0239 32 1 8.9067 4.7160 -0.9341 33 1 8.9200 4.7231 0.8457 34 1 12.1730 6.1835 -0.0742 35 1 5.8371 1.8700 -2.1623 36 1 6.4570 0.5396 -1.1366 37 1 4.3641 -0.4280 -1.1268 38 1 3.7442 0.9023 -2.1526 39 1 3.9340 3.2702 0.9049 40 1 3.9236 3.2739 -0.8998 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143206342.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:30 Heat of formation + Delta-G solvation = -126.744840 kcal Electronic energy + Delta-G solvation = -22401.304416 eV Core-core repulsion = 18987.733954 eV Total energy + Delta-G solvation = -3413.570462 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.25197 -39.83546 -37.98640 -36.63356 -33.34426 -32.91286 -30.53015 -29.87554 -28.65463 -27.83614 -27.24527 -23.67682 -22.73668 -22.33798 -20.19964 -19.81118 -18.79726 -17.41306 -17.13725 -16.63186 -16.22806 -15.81966 -15.34291 -15.07400 -14.72683 -14.40208 -13.95989 -13.52725 -13.45965 -12.84110 -12.67868 -12.46148 -12.35522 -12.05135 -11.90378 -11.83232 -11.53048 -11.33281 -11.09681 -11.06850 -11.05510 -10.79113 -10.60270 -10.54140 -10.31914 -10.15734 -9.94752 -9.28120 -8.60353 -8.48018 -8.39458 -6.05136 -4.04687 1.92657 2.40904 3.37600 3.39915 3.44699 3.68955 3.70767 4.11170 4.26816 4.34344 4.49057 4.70184 4.80319 4.87394 5.07165 5.10970 5.17112 5.21605 5.30220 5.33765 5.36827 5.39524 5.58256 5.62320 5.77897 5.89540 5.90198 6.08920 6.10780 6.28959 6.31182 6.39115 6.40197 7.08780 7.21475 7.33584 7.51294 7.96519 8.07194 8.45238 9.05847 9.24655 9.60440 11.07268 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.050287 B = 0.003322 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.666657 B = 8426.269339 C = 8633.171118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.354 6.354 3 C 0.495 3.505 4 O -0.503 6.503 5 C -0.083 4.083 6 C -0.098 4.098 7 C -0.122 4.122 8 C 0.163 3.837 9 N -0.726 5.726 10 C 0.518 3.482 11 O -0.538 6.538 12 C 0.006 3.994 13 C -0.508 4.508 14 H 0.075 0.925 15 C 0.054 3.946 16 N -0.901 5.901 17 Si 0.902 3.098 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.276 1.276 21 C -0.123 4.123 22 C -0.098 4.098 23 C -0.098 4.098 24 H 0.101 0.899 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.399 0.601 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.262 0.738 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.677 -8.947 0.172 22.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.270 6.270 3 C 0.338 3.662 4 O -0.390 6.390 5 C -0.084 4.084 6 C -0.137 4.137 7 C -0.160 4.160 8 C 0.075 3.925 9 N -0.378 5.378 10 C 0.309 3.691 11 O -0.413 6.413 12 C -0.034 4.034 13 C -0.546 4.546 14 H 0.093 0.907 15 C -0.146 4.146 16 N -0.541 5.541 17 Si 0.730 3.270 18 H -0.201 1.201 19 H -0.214 1.214 20 H -0.201 1.201 21 C -0.162 4.162 22 C -0.136 4.136 23 C -0.136 4.136 24 H 0.120 0.880 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.234 0.766 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.100 0.900 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -20.494 -9.336 0.170 22.522 hybrid contribution 0.420 0.295 -0.013 0.513 sum -20.075 -9.041 0.158 22.017 Atomic orbital electron populations 1.23287 0.76412 1.03727 1.02564 1.86528 1.23257 1.33331 1.83921 1.22840 0.90391 0.81231 0.71751 1.90668 1.66823 1.36458 1.45085 1.22403 0.86106 0.99596 1.00338 1.22937 0.95323 1.00366 0.95026 1.23239 0.95638 0.99210 0.97951 1.21957 0.86853 0.88522 0.95155 1.45852 1.05519 1.08145 1.78325 1.22006 0.81885 0.92324 0.72920 1.90514 1.80549 1.21720 1.48513 1.19232 0.92173 0.92490 0.99459 1.21122 0.89062 0.94255 1.50170 0.90707 1.25008 0.99575 0.94795 0.95252 1.69952 1.30183 1.02870 1.51104 0.86490 0.83142 0.78567 0.78837 1.20143 1.21398 1.20139 1.22851 0.95921 0.99278 0.98107 1.22564 0.95454 1.00437 0.95109 1.23556 0.93260 0.93505 1.03296 0.88025 0.91891 0.91881 0.91310 0.90279 0.89739 0.91177 0.76628 0.93500 0.93497 0.92859 0.91249 0.89723 0.90277 0.91375 0.89963 0.89996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 101.05 1.07 1.31 16 2 O -0.35 -3.64 10.57 -39.24 -0.41 -4.05 16 3 C 0.50 5.89 7.33 36.01 0.26 6.15 16 4 O -0.50 -7.13 16.26 -18.75 -0.30 -7.43 16 5 C -0.08 -0.94 1.38 -150.36 -0.21 -1.14 16 6 C -0.10 -1.07 5.99 -23.12 -0.14 -1.21 16 7 C -0.12 -1.67 5.61 -23.11 -0.13 -1.80 16 8 C 0.16 2.33 1.37 -126.53 -0.17 2.15 16 9 N -0.73 -12.03 5.51 -42.78 -0.24 -12.26 16 10 C 0.52 11.28 7.57 -10.98 -0.08 11.19 16 11 O -0.54 -13.11 13.73 5.56 0.08 -13.03 16 12 C 0.01 0.14 5.46 -29.03 -0.16 -0.02 16 13 C -0.51 -14.53 8.92 -34.44 -0.31 -14.84 16 14 H 0.07 2.22 6.75 -52.48 -0.35 1.87 16 15 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 16 N -0.90 -26.34 13.29 55.43 0.74 -25.61 16 17 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 C -0.12 -1.69 5.50 -24.33 -0.13 -1.82 16 22 C -0.10 -1.07 5.88 -24.30 -0.14 -1.21 16 23 C -0.10 -1.18 5.50 -22.43 -0.12 -1.31 16 24 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 26 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.08 0.78 7.87 -51.93 -0.41 0.37 16 29 H 0.08 1.32 7.40 -51.93 -0.38 0.93 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.40 5.68 8.75 -40.82 -0.36 5.33 16 32 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.08 1.32 7.40 -51.93 -0.38 0.94 16 37 H 0.08 0.78 7.87 -51.93 -0.41 0.37 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 330.64 15.07 4.98 4.98 Total: -1.00 -32.84 330.64 -6.63 -39.47 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -6.08 Total: 2.01 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -0.37 Total: -1.10 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.50 Total: -37.87 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -0.64 Total: -24.52 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.84 -6.63 -39.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143206342.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.278 kcal (2) G-P(sol) polarization free energy of solvation -32.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds