Wall clock time and date at job start Tue Mar 31 2020 05:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99819 * 2 1 4 4 H 1.48500 * 109.46855 * 239.99613 * 3 2 1 5 5 H 1.48499 * 109.47241 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47413 * 119.99872 * 3 2 1 7 7 C 1.37877 * 120.00272 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00459 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99599 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.46753 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46910 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46927 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.46887 * 180.02562 * 12 11 10 14 14 O 1.21282 * 120.00006 * 0.02562 * 13 12 11 15 15 N 1.34775 * 120.00244 * 179.97438 * 13 12 11 16 16 C 1.46500 * 120.00366 * 179.97438 * 15 13 12 17 17 H 1.09000 * 109.47175 * 325.00113 * 16 15 13 18 18 C 1.52997 * 109.47204 * 85.00218 * 16 15 13 19 19 O 1.42904 * 109.47002 * 64.99948 * 18 16 15 20 20 C 1.50706 * 109.46949 * 205.00138 * 16 15 13 21 21 N 1.30496 * 125.65209 * 334.69420 * 20 16 15 22 22 C 1.34126 * 109.25400 * 179.89445 * 21 20 16 23 23 C 1.34667 * 108.02221 * 0.36957 * 22 21 20 24 24 N 1.35041 * 125.64724 * 155.00186 * 20 16 15 25 25 H 0.97004 * 126.39688 * 359.93591 * 24 20 16 26 26 H 0.97006 * 120.00195 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47101 * 59.99665 * 9 7 2 28 28 H 1.08996 * 109.46716 * 299.99652 * 9 7 2 29 29 H 1.09001 * 109.47252 * 60.00173 * 10 9 7 30 30 H 1.08999 * 109.47491 * 300.00067 * 10 9 7 31 31 H 1.08994 * 109.47130 * 60.00451 * 11 10 9 32 32 H 1.08999 * 109.47482 * 299.99908 * 11 10 9 33 33 H 1.09001 * 109.47374 * 60.00331 * 12 11 10 34 34 H 1.08999 * 109.47353 * 300.00236 * 12 11 10 35 35 H 0.97001 * 119.99752 * 0.02562 * 15 13 12 36 36 H 1.08993 * 109.47132 * 184.99721 * 18 16 15 37 37 H 1.09001 * 109.46992 * 305.00476 * 18 16 15 38 38 H 0.96702 * 114.00233 * 180.02562 * 19 18 16 39 39 H 1.08006 * 125.98715 * 180.10983 * 22 21 20 40 40 H 1.07999 * 126.59199 * 179.81853 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4802 -4.9871 0.0012 12 6 2.4745 -6.1500 0.0018 13 6 1.7210 -7.4551 0.0018 14 8 0.5082 -7.4551 0.0009 15 7 2.3949 -8.6223 0.0018 16 6 1.6624 -9.8910 0.0024 17 1 0.7519 -9.7846 0.5921 18 6 1.2980 -10.2702 -1.4344 19 8 2.4920 -10.5233 -2.1776 20 6 2.5267 -10.9697 0.6028 21 7 3.8314 -10.9721 0.6297 22 6 4.2592 -12.0855 1.2430 23 6 3.1787 -12.8043 1.6029 24 7 2.0794 -12.0969 1.1970 25 1 1.1522 -12.3565 1.3147 26 1 -0.4851 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 2.8719 -3.6043 0.8905 30 1 2.8719 -3.6043 -0.8894 31 1 0.8534 -5.0451 -0.8886 32 1 0.8539 -5.0446 0.8914 33 1 3.1011 -6.0918 0.8918 34 1 3.1013 -6.0927 -0.8881 35 1 3.3649 -8.6223 0.0022 36 1 0.6776 -11.1663 -1.4274 37 1 0.7483 -9.4511 -1.8980 38 1 2.3366 -10.7695 -3.0998 39 1 5.2897 -12.3599 1.4141 40 1 3.1794 -13.7556 2.1141 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157217482.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:57 Heat of formation + Delta-G solvation = -48.242026 kcal Electronic energy + Delta-G solvation = -21167.381479 eV Core-core repulsion = 17789.507906 eV Total energy + Delta-G solvation = -3377.873573 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.41418 -39.76548 -37.30927 -35.02622 -34.59003 -32.85296 -32.59435 -31.05773 -29.47168 -28.21844 -25.60299 -23.82896 -22.26613 -21.89918 -20.74127 -20.03954 -19.91245 -18.61021 -17.71535 -16.57296 -16.32326 -16.04306 -15.80869 -15.28193 -14.81481 -14.41458 -14.29862 -14.12702 -14.02046 -13.65641 -13.44565 -12.88239 -12.53389 -12.12349 -11.93321 -11.62653 -11.54663 -10.92539 -10.50354 -10.46749 -10.40606 -10.35529 -10.34630 -10.32428 -9.81143 -9.55465 -9.25302 -9.17662 -8.94892 -8.73999 -8.26349 -5.91424 -3.93676 1.67157 2.52644 2.72226 2.84426 3.25683 3.38525 3.42503 3.45193 3.86548 3.94741 4.52486 4.64274 4.76017 4.84797 4.92796 5.03027 5.15573 5.27146 5.35106 5.43525 5.45149 5.47242 5.72803 5.95471 6.21130 6.27821 6.37391 6.41395 6.61344 6.90502 6.93820 7.08129 7.25950 7.31949 7.53413 7.76775 7.78378 7.95051 8.10374 8.27541 8.52449 9.13929 9.69708 11.19898 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.037798 B = 0.002472 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.597661 B =11326.430995 C =11544.272937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.111 4.111 11 C -0.102 4.102 12 C -0.137 4.137 13 C 0.516 3.484 14 O -0.543 6.543 15 N -0.714 5.714 16 C 0.236 3.764 17 H 0.113 0.887 18 C 0.068 3.932 19 O -0.555 6.555 20 C 0.209 3.791 21 N -0.468 5.468 22 C -0.025 4.025 23 C -0.055 4.055 24 N -0.565 5.565 25 H 0.419 0.581 26 H 0.260 0.740 27 H 0.015 0.985 28 H 0.015 0.985 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.416 0.584 36 H 0.049 0.951 37 H 0.066 0.934 38 H 0.377 0.623 39 H 0.171 0.829 40 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.632 -29.547 0.328 29.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.149 4.149 11 C -0.140 4.140 12 C -0.177 4.177 13 C 0.304 3.696 14 O -0.419 6.419 15 N -0.368 5.368 16 C 0.128 3.872 17 H 0.130 0.870 18 C -0.013 4.013 19 O -0.360 6.360 20 C -0.056 4.056 21 N -0.187 5.187 22 C -0.173 4.173 23 C -0.189 4.189 24 N -0.168 5.168 25 H 0.256 0.744 26 H 0.070 0.930 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.253 0.747 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.224 0.776 39 H 0.188 0.812 40 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 4.447 -28.651 0.594 29.000 hybrid contribution -0.296 -0.236 -0.077 0.386 sum 4.151 -28.887 0.516 29.188 Atomic orbital electron populations 1.69965 1.06045 1.26570 1.50996 1.25040 0.94841 0.99206 0.95500 0.86671 0.79567 0.83254 0.78561 1.20285 1.21361 1.20286 1.21262 0.92975 0.91225 1.50345 0.92787 1.19092 0.94064 0.91276 0.97264 1.21653 0.99079 0.93964 1.00154 1.21450 0.96992 0.92710 1.02870 1.21783 1.00090 0.91496 1.04325 1.21183 0.88387 0.85507 0.74475 1.90689 1.14175 1.87699 1.49350 1.45861 1.11377 1.03483 1.76126 1.19054 0.93297 0.80719 0.94091 0.86980 1.22585 0.87384 0.99602 0.91697 1.86609 1.30670 1.92020 1.26676 1.22889 0.91340 0.90257 1.01104 1.70084 1.07672 1.22314 1.18662 1.22391 0.99215 0.92737 1.02996 1.22771 0.86450 1.01052 1.08614 1.43146 1.09885 1.18138 1.45635 0.74366 0.93030 0.96618 0.96614 0.93447 0.93417 0.91826 0.91851 0.88965 0.88874 0.74749 0.93255 0.91614 0.77642 0.81176 0.80502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.80 13.29 55.43 0.74 -27.07 16 2 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.17 29.54 -169.99 -5.02 17.14 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.52 -15.19 9.11 -34.44 -0.31 -15.50 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.11 -2.34 5.15 -26.73 -0.14 -2.47 16 11 C -0.10 -1.86 4.50 -26.73 -0.12 -1.98 16 12 C -0.14 -1.93 5.70 -27.88 -0.16 -2.09 16 13 C 0.52 7.39 7.79 -10.99 -0.09 7.30 16 14 O -0.54 -9.45 15.65 5.56 0.09 -9.37 16 15 N -0.71 -8.44 5.02 -54.93 -0.28 -8.72 16 16 C 0.24 2.41 2.91 -69.08 -0.20 2.21 16 17 H 0.11 1.10 7.58 -51.93 -0.39 0.71 16 18 C 0.07 0.60 6.84 37.16 0.25 0.86 16 19 O -0.56 -5.29 13.09 -35.23 -0.46 -5.75 16 20 C 0.21 2.10 6.65 -155.42 -1.03 1.06 16 21 N -0.47 -5.46 10.47 -10.81 -0.11 -5.58 16 22 C -0.03 -0.23 11.87 -17.81 -0.21 -0.44 16 23 C -0.06 -0.38 12.04 -16.56 -0.20 -0.58 16 24 N -0.56 -3.95 6.15 -10.23 -0.06 -4.02 16 25 H 0.42 1.59 8.96 -40.82 -0.37 1.23 16 26 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 32 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 33 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.42 4.79 7.99 -40.82 -0.33 4.46 16 36 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.38 2.02 9.12 45.56 0.42 2.44 16 39 H 0.17 1.18 8.06 -52.48 -0.42 0.76 16 40 H 0.18 0.58 8.06 -52.49 -0.42 0.15 16 LS Contribution 344.66 15.07 5.19 5.19 Total: -1.00 -37.11 344.66 -7.64 -44.75 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -5.28 Total: 3.11 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -2.44 Total: -9.70 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: 0.28 Total: -45.38 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.37 Total: -15.12 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -37.11 -7.64 -44.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157217482.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.494 kcal (2) G-P(sol) polarization free energy of solvation -37.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds