Wall clock time and date at job start Tue Mar 31 2020 05:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.46929 * 2 1 4 4 O 1.42907 * 109.47114 * 119.99416 * 2 1 3 5 5 C 1.52998 * 109.47078 * 239.99884 * 2 1 3 6 6 H 1.08991 * 109.47226 * 64.99706 * 5 2 1 7 7 C 1.53002 * 109.46992 * 185.00203 * 5 2 1 8 8 O 1.42897 * 109.47496 * 54.99622 * 7 5 2 9 9 N 1.46499 * 109.46877 * 304.99484 * 5 2 1 10 10 C 1.39936 * 119.99951 * 155.00129 * 9 5 2 11 11 C 1.38864 * 120.02180 * 180.02562 * 10 9 5 12 12 C 1.38114 * 119.98209 * 180.02562 * 11 10 9 13 13 C 1.38701 * 120.01508 * 0.02562 * 12 11 10 14 14 O 1.36005 * 119.97449 * 179.97438 * 13 12 11 15 15 C 1.42901 * 116.99661 * 179.97438 * 14 13 12 16 16 C 1.50704 * 109.46992 * 179.97438 * 15 14 13 17 17 H 1.07992 * 119.99812 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99988 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99828 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00086 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47151 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47723 * 119.99618 * 20 18 16 23 23 H 1.48504 * 109.46969 * 239.99571 * 20 18 16 24 24 C 1.38700 * 120.04364 * 0.23198 * 13 12 11 25 25 C 1.38114 * 120.01604 * 359.48907 * 24 13 12 26 26 H 1.08997 * 109.47337 * 60.00185 * 1 2 3 27 27 H 1.09002 * 109.46968 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47350 * 300.00148 * 1 2 3 29 29 H 0.96702 * 113.99944 * 299.99988 * 4 2 1 30 30 H 1.09000 * 109.47049 * 174.99760 * 7 5 2 31 31 H 1.09003 * 109.46469 * 294.99742 * 7 5 2 32 32 H 0.96696 * 114.00197 * 180.02562 * 8 7 5 33 33 H 0.97005 * 120.00225 * 335.00691 * 9 5 2 34 34 H 1.07997 * 120.00795 * 0.04335 * 11 10 9 35 35 H 1.07993 * 119.98766 * 179.97438 * 12 11 10 36 36 H 1.08996 * 109.47352 * 299.99796 * 15 14 13 37 37 H 1.08999 * 109.47144 * 59.99821 * 15 14 13 38 38 H 0.97005 * 120.00048 * 179.97438 * 19 18 16 39 39 H 1.08000 * 119.99003 * 179.72453 * 24 13 12 40 40 H 1.07993 * 120.00927 * 180.25438 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.0400 -0.7213 -1.2492 6 1 1.7516 -0.1584 -2.1369 7 6 3.5648 -0.8311 -1.1879 8 8 3.9480 -1.4666 0.0333 9 7 1.4559 -2.0634 -1.3108 10 6 1.3245 -2.7134 -2.5430 11 6 0.7704 -3.9854 -2.6020 12 6 0.6416 -4.6264 -3.8185 13 6 1.0660 -4.0002 -4.9811 14 8 0.9393 -4.6324 -6.1786 15 6 1.3965 -3.9287 -7.3352 16 6 1.1776 -4.7793 -8.5599 17 1 0.7341 -5.7593 -8.4643 18 6 1.5444 -4.3067 -9.8021 19 7 2.0850 -3.1134 -9.9183 20 14 1.2725 -5.3607 -11.3201 21 1 0.6531 -6.6505 -10.9227 22 1 0.3725 -4.6486 -12.2625 23 1 2.5761 -5.6212 -11.9819 24 6 1.6245 -2.7319 -4.9226 25 6 1.7487 -2.0871 -3.7075 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.7210 -0.2699 1.9980 30 1 3.9208 -1.4217 -2.0320 31 1 4.0029 0.1661 -1.2316 32 1 4.9035 -1.5695 0.1402 33 1 1.1601 -2.5014 -0.4974 34 1 0.4401 -4.4731 -1.6968 35 1 0.2111 -5.6157 -3.8644 36 1 0.8414 -2.9961 -7.4362 37 1 2.4591 -3.7095 -7.2307 38 1 2.3434 -2.7810 -10.7922 39 1 1.9587 -2.2469 -5.8278 40 1 2.1798 -1.0979 -3.6626 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161778513.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:18 Heat of formation + Delta-G solvation = -111.329507 kcal Electronic energy + Delta-G solvation = -21777.353237 eV Core-core repulsion = 18364.451234 eV Total energy + Delta-G solvation = -3412.902003 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.64680 -38.58801 -36.79962 -36.19696 -34.27134 -32.81774 -31.18783 -30.53522 -29.03834 -27.83990 -26.52494 -23.65278 -23.41628 -22.17524 -20.91258 -20.13834 -18.10927 -17.27789 -16.91900 -16.60461 -16.28730 -15.88134 -15.03432 -14.73859 -14.43540 -14.39781 -14.08289 -14.01454 -13.74543 -13.11458 -12.85554 -12.65861 -12.59033 -12.34931 -11.99347 -11.97867 -11.70938 -11.47353 -11.08743 -10.90602 -10.87780 -10.43895 -10.30636 -10.16868 -10.05327 -9.89414 -9.17230 -8.96907 -8.53390 -8.41396 -6.54614 -6.20101 -4.22751 1.84948 2.23289 3.25652 3.32152 3.38642 3.54370 4.03664 4.22087 4.25488 4.41078 4.51627 4.71728 4.80879 4.92658 5.17146 5.21836 5.25756 5.31499 5.41821 5.43761 5.49226 5.54601 5.73660 5.88114 5.92655 5.97830 6.09225 6.46788 6.66818 6.73825 6.90167 7.13181 7.23552 7.24954 7.50202 7.62849 7.71785 7.75704 8.03922 8.05613 8.63192 8.94258 9.42464 10.91352 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.034761 B = 0.003055 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.314263 B = 9161.638039 C = 9382.168055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.099 3.901 3 H 0.058 0.942 4 O -0.535 6.535 5 C 0.166 3.834 6 H 0.098 0.902 7 C 0.060 3.940 8 O -0.539 6.539 9 N -0.736 5.736 10 C 0.161 3.839 11 C -0.155 4.155 12 C -0.122 4.122 13 C 0.100 3.900 14 O -0.323 6.323 15 C 0.195 3.805 16 C -0.520 4.520 17 H 0.070 0.930 18 C 0.059 3.941 19 N -0.896 5.896 20 Si 0.912 3.088 21 H -0.269 1.269 22 H -0.281 1.281 23 H -0.281 1.281 24 C -0.165 4.165 25 C -0.161 4.161 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.365 0.635 30 H 0.049 0.951 31 H 0.041 0.959 32 H 0.364 0.636 33 H 0.401 0.599 34 H 0.117 0.883 35 H 0.124 0.876 36 H 0.018 0.982 37 H 0.018 0.982 38 H 0.265 0.735 39 H 0.131 0.869 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.445 8.384 21.043 22.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.039 3.961 3 H 0.076 0.924 4 O -0.338 6.338 5 C 0.059 3.941 6 H 0.115 0.885 7 C -0.020 4.020 8 O -0.342 6.342 9 N -0.369 5.369 10 C 0.061 3.939 11 C -0.178 4.178 12 C -0.141 4.141 13 C 0.052 3.948 14 O -0.237 6.237 15 C 0.122 3.878 16 C -0.559 4.559 17 H 0.088 0.912 18 C -0.143 4.143 19 N -0.534 5.534 20 Si 0.739 3.261 21 H -0.194 1.194 22 H -0.207 1.207 23 H -0.207 1.207 24 C -0.184 4.184 25 C -0.183 4.183 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.210 0.790 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.209 0.791 33 H 0.236 0.764 34 H 0.135 0.865 35 H 0.142 0.858 36 H 0.036 0.964 37 H 0.036 0.964 38 H 0.075 0.925 39 H 0.149 0.851 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.126 8.080 20.416 21.957 hybrid contribution 0.331 0.213 -0.450 0.598 sum 0.457 8.293 19.966 21.624 Atomic orbital electron populations 1.22491 0.96251 1.03316 1.02170 1.21933 0.92803 0.94864 0.86523 0.92391 1.86836 1.76152 1.56246 1.14582 1.20965 0.91160 0.85431 0.96557 0.88461 1.22661 0.95838 0.95875 0.87670 1.86737 1.26561 1.82178 1.38700 1.44251 1.70324 1.16515 1.05830 1.17610 0.98280 0.92313 0.85699 1.20231 1.05984 0.94347 0.97205 1.20165 1.03597 1.00452 0.89879 1.19048 0.96847 0.91642 0.87286 1.86104 1.78865 1.45420 1.13319 1.20542 0.94384 0.92905 0.79994 1.21049 1.41656 1.03245 0.89900 0.91173 1.24937 0.94807 0.95418 0.99160 1.69964 1.41559 1.17249 1.24670 0.86213 0.77977 0.80256 0.81683 1.19366 1.20721 1.20726 1.21227 1.03242 0.95502 0.98431 1.20353 1.06672 1.00123 0.91169 0.91625 0.91303 0.92601 0.78970 0.93310 0.94100 0.79137 0.76393 0.86494 0.85840 0.96399 0.96418 0.92503 0.85145 0.86925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.43 9.32 37.16 0.35 -1.09 16 2 C 0.10 0.83 3.37 -26.73 -0.09 0.74 16 3 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 4 O -0.53 -4.87 10.62 -58.58 -0.62 -5.49 16 5 C 0.17 1.72 2.06 -67.93 -0.14 1.58 16 6 H 0.10 0.98 6.49 -51.93 -0.34 0.64 16 7 C 0.06 0.62 6.79 37.16 0.25 0.87 16 8 O -0.54 -5.92 11.17 -58.58 -0.65 -6.58 16 9 N -0.74 -9.02 4.44 -52.12 -0.23 -9.25 16 10 C 0.16 2.43 6.64 -83.69 -0.56 1.87 16 11 C -0.16 -2.43 9.89 -39.40 -0.39 -2.81 16 12 C -0.12 -2.21 9.98 -39.46 -0.39 -2.61 16 13 C 0.10 2.14 6.69 -39.24 -0.26 1.88 16 14 O -0.32 -8.19 10.12 -19.76 -0.20 -8.39 16 15 C 0.19 5.33 4.49 36.01 0.16 5.50 16 16 C -0.52 -15.22 9.43 -34.44 -0.32 -15.54 16 17 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.90 -26.30 13.29 55.43 0.74 -25.57 16 20 Si 0.91 21.59 29.54 -169.99 -5.02 16.57 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C -0.16 -3.25 9.03 -39.46 -0.36 -3.60 16 25 C -0.16 -2.62 8.85 -39.39 -0.35 -2.97 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.62 7.13 -51.93 -0.37 0.25 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.36 1.94 9.08 45.56 0.41 2.35 16 30 H 0.05 0.58 7.81 -51.93 -0.41 0.17 16 31 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.36 2.70 9.12 45.56 0.42 3.12 16 33 H 0.40 4.85 7.87 -40.82 -0.32 4.53 16 34 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 35 H 0.12 2.08 8.06 -52.49 -0.42 1.66 16 36 H 0.02 0.51 7.67 -51.93 -0.40 0.11 16 37 H 0.02 0.51 7.65 -51.93 -0.40 0.11 16 38 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.13 2.70 6.29 -52.49 -0.33 2.37 16 40 H 0.11 1.58 6.21 -52.49 -0.33 1.25 16 LS Contribution 332.60 15.07 5.01 5.01 Total: -1.00 -32.95 332.60 -7.32 -40.27 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -4.14 Total: 8.04 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: -2.20 Total: -14.62 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.51 Total: -34.82 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -1.48 Total: -20.45 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.95 -7.32 -40.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161778513.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.061 kcal (2) G-P(sol) polarization free energy of solvation -32.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds