Wall clock time and date at job start Tue Mar 31 2020 05:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 110.99890 * 2 1 4 4 C 1.50702 * 109.47345 * 293.95571 * 3 2 1 5 5 H 1.07995 * 119.99817 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99952 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00182 * 359.97438 * 6 4 3 8 8 Si 1.86807 * 119.99611 * 180.02562 * 6 4 3 9 9 H 1.48492 * 109.47066 * 60.00034 * 8 6 4 10 10 H 1.48503 * 109.46692 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46849 * 299.99389 * 8 6 4 12 12 C 1.46898 * 111.00370 * 123.95446 * 2 1 3 13 13 H 1.08999 * 109.71324 * 186.58754 * 12 2 1 14 14 C 1.53323 * 109.68333 * 66.04714 * 12 2 1 15 15 C 1.52733 * 108.38240 * 170.39955 * 14 12 2 16 16 C 1.50645 * 110.59113 * 51.08796 * 15 14 12 17 17 C 1.39155 * 117.72298 * 162.51982 * 16 15 14 18 18 F 1.35098 * 119.73508 * 359.71355 * 17 16 15 19 19 C 1.38112 * 120.52821 * 179.69570 * 17 16 15 20 20 C 1.38451 * 119.71490 * 0.20475 * 19 17 16 21 21 F 1.35098 * 120.12450 * 179.82437 * 20 19 17 22 22 C 1.38167 * 119.74367 * 359.56067 * 20 19 17 23 23 C 1.37641 * 122.56873 * 342.30091 * 16 15 14 24 24 C 1.50642 * 122.55996 * 0.61308 * 23 16 15 25 25 H 1.08995 * 109.47017 * 296.04070 * 1 2 3 26 26 H 1.08996 * 109.46926 * 56.04963 * 1 2 3 27 27 H 1.09005 * 109.46736 * 176.04316 * 1 2 3 28 28 H 1.09000 * 109.46948 * 53.95184 * 3 2 1 29 29 H 1.08998 * 109.47363 * 173.95016 * 3 2 1 30 30 H 0.97000 * 119.99470 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.68548 * 50.67819 * 14 12 2 32 32 H 1.09001 * 109.68367 * 290.12192 * 14 12 2 33 33 H 1.09000 * 109.24841 * 290.80791 * 15 14 12 34 34 H 1.08992 * 109.22393 * 171.35698 * 15 14 12 35 35 H 1.08002 * 120.13889 * 179.97438 * 19 17 16 36 36 H 1.07996 * 119.70587 * 180.30368 * 22 20 19 37 37 H 1.08999 * 109.25576 * 222.00445 * 24 23 16 38 38 H 1.09007 * 109.22017 * 102.55530 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0746 1.5113 -2.0487 6 6 2.0276 3.3492 -1.5288 7 7 2.7128 4.0016 -0.6153 8 14 1.5825 4.1870 -3.1380 9 1 0.1053 4.2244 -3.2845 10 1 2.1148 5.5733 -3.1380 11 1 2.1733 3.4294 -4.2704 12 6 1.9955 -0.7660 1.1375 13 1 3.0789 -0.6560 1.1849 14 6 1.6335 -2.2469 0.9748 15 6 2.3907 -3.0469 2.0328 16 6 2.1818 -2.4488 3.3995 17 6 2.4790 -3.2402 4.5048 18 9 2.9320 -4.5001 4.3245 19 6 2.3148 -2.7478 5.7847 20 6 1.8469 -1.4579 5.9690 21 9 1.6799 -0.9691 7.2174 22 6 1.5566 -0.6706 4.8713 23 6 1.7189 -1.1657 3.5839 24 6 1.3696 -0.2569 2.4344 25 1 -0.3633 0.4511 0.9233 26 1 -0.3633 0.5739 -0.8524 27 1 -0.3633 -1.0253 -0.0709 28 1 1.5610 1.9273 0.8309 29 1 3.0797 1.3445 0.1083 30 1 2.9873 4.9177 -0.7773 31 1 1.9217 -2.5883 -0.0195 32 1 0.5604 -2.3798 1.1124 33 1 3.4546 -3.0392 1.7959 34 1 2.0297 -4.0753 2.0316 35 1 2.5470 -3.3677 6.6381 36 1 1.1963 0.3372 5.0158 37 1 1.7414 0.7462 2.6434 38 1 0.2860 -0.2220 2.3209 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171360229.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:52 Heat of formation + Delta-G solvation = -71.524967 kcal Electronic energy + Delta-G solvation = -21892.063167 eV Core-core repulsion = 18369.799703 eV Total energy + Delta-G solvation = -3522.263464 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.129 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.12071 -49.08701 -40.07846 -37.43755 -34.33194 -32.53646 -31.96698 -29.56261 -28.44738 -27.12853 -25.31596 -23.74020 -22.51511 -22.45718 -20.71414 -18.93108 -17.87976 -17.26468 -16.39918 -16.20042 -15.99173 -15.74870 -15.42924 -15.05814 -14.57993 -14.48082 -13.90562 -13.86779 -13.84579 -13.38924 -12.89562 -12.62257 -12.37455 -12.17738 -11.97478 -11.81368 -11.37016 -11.19388 -11.01646 -10.92698 -10.61663 -10.50553 -10.44374 -10.32441 -9.78520 -9.23797 -8.88682 -8.62870 -8.45303 -7.27408 -6.05347 -4.06750 0.85163 0.90408 3.22504 3.31822 3.36236 3.38902 3.73739 4.24883 4.35764 4.43144 4.54418 4.75277 4.92463 4.93471 5.09169 5.22800 5.30480 5.48159 5.50239 5.59502 5.71022 5.75795 5.85436 5.89248 5.96589 5.98775 6.02249 6.15487 6.26626 6.42892 6.45036 6.57790 6.71027 6.72774 7.25610 7.29941 7.76657 8.04789 8.15374 8.51150 9.00595 9.57685 11.05412 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.026061 B = 0.003978 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.158829 B = 7036.693478 C = 7720.124857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.530 5.530 3 C 0.191 3.809 4 C -0.509 4.509 5 H 0.063 0.937 6 C 0.056 3.944 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.086 3.914 13 H 0.081 0.919 14 C -0.109 4.109 15 C -0.077 4.077 16 C -0.117 4.117 17 C 0.126 3.874 18 F -0.132 7.132 19 C -0.201 4.201 20 C 0.123 3.877 21 F -0.135 7.135 22 C -0.165 4.165 23 C -0.002 4.002 24 C -0.123 4.123 25 H 0.017 0.983 26 H 0.074 0.926 27 H 0.047 0.953 28 H -0.007 1.007 29 H 0.029 0.971 30 H 0.262 0.738 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.145 0.855 36 H 0.141 0.859 37 H 0.087 0.913 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.225 -13.378 10.816 17.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.253 5.253 3 C 0.066 3.934 4 C -0.548 4.548 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.201 1.201 12 C -0.024 4.024 13 H 0.099 0.901 14 C -0.147 4.147 15 C -0.115 4.115 16 C -0.118 4.118 17 C 0.106 3.894 18 F -0.110 7.110 19 C -0.220 4.220 20 C 0.104 3.896 21 F -0.113 7.113 22 C -0.184 4.184 23 C -0.003 4.003 24 C -0.161 4.161 25 H 0.035 0.965 26 H 0.093 0.907 27 H 0.066 0.934 28 H 0.011 0.989 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.162 0.838 36 H 0.159 0.841 37 H 0.105 0.895 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.964 -13.441 10.429 17.126 hybrid contribution -0.359 0.898 0.399 1.046 sum -2.324 -12.543 10.829 16.733 Atomic orbital electron populations 1.22331 0.89171 0.99743 1.00681 1.62369 1.06945 1.18005 1.37948 1.19753 0.95380 0.81590 0.96653 1.21126 1.34951 0.96930 1.01763 0.91911 1.24976 0.95255 0.97355 0.96934 1.69942 1.38271 1.11515 1.34098 0.86573 0.78687 0.78365 0.83856 1.20299 1.21378 1.20149 1.21712 0.99629 0.93212 0.87836 0.90108 1.21604 0.99808 0.94637 0.98617 1.20429 1.01863 0.99186 0.90000 1.19798 1.02628 0.94062 0.95301 1.17292 0.99146 0.80094 0.92856 1.91496 1.86358 1.37093 1.96101 1.20855 1.07555 0.96364 0.97263 1.17130 1.00646 0.92194 0.79622 1.91515 1.93162 1.87885 1.38766 1.21297 1.04628 1.01415 0.91088 1.19439 0.93918 0.92670 0.94321 1.21434 1.02829 0.98499 0.93383 0.96477 0.90707 0.93415 0.98899 0.95275 0.92862 0.90055 0.91855 0.89973 0.90452 0.83764 0.84102 0.89451 0.89064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 8.60 60.07 0.52 1.04 16 2 N -0.53 -10.60 4.71 -236.29 -1.11 -11.71 16 3 C 0.19 4.73 4.33 -4.97 -0.02 4.70 16 4 C -0.51 -13.85 8.46 -34.44 -0.29 -14.14 16 5 H 0.06 1.69 7.12 -52.49 -0.37 1.32 16 6 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -26.14 13.29 55.43 0.74 -25.41 16 8 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 C 0.09 1.40 2.21 -67.68 -0.15 1.25 16 13 H 0.08 1.40 7.89 -51.93 -0.41 0.99 16 14 C -0.11 -1.45 4.92 -26.70 -0.13 -1.58 16 15 C -0.08 -0.92 5.34 -28.05 -0.15 -1.07 16 16 C -0.12 -1.49 5.74 -104.53 -0.60 -2.09 16 17 C 0.13 1.53 7.21 -39.29 -0.28 1.24 16 18 F -0.13 -1.59 16.47 2.25 0.04 -1.55 16 19 C -0.20 -2.30 10.00 -39.55 -0.40 -2.69 16 20 C 0.12 1.51 7.30 -39.53 -0.29 1.22 16 21 F -0.13 -1.67 17.27 2.25 0.04 -1.63 16 22 C -0.17 -2.08 9.59 -39.37 -0.38 -2.46 16 23 C 0.00 -0.03 5.74 -104.63 -0.60 -0.63 16 24 C -0.12 -1.84 4.34 -28.04 -0.12 -1.96 16 25 H 0.02 0.29 6.02 -51.93 -0.31 -0.02 16 26 H 0.07 1.47 6.76 -51.93 -0.35 1.12 16 27 H 0.05 0.73 6.72 -51.93 -0.35 0.38 16 28 H -0.01 -0.18 7.32 -51.93 -0.38 -0.56 16 29 H 0.03 0.78 7.93 -51.93 -0.41 0.37 16 30 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.06 0.81 7.05 -51.93 -0.37 0.45 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.08 0.82 7.85 -51.93 -0.41 0.41 16 35 H 0.14 1.36 8.06 -52.49 -0.42 0.93 16 36 H 0.14 1.63 8.05 -52.49 -0.42 1.20 16 37 H 0.09 1.44 7.35 -51.93 -0.38 1.05 16 38 H 0.09 1.34 5.78 -51.92 -0.30 1.04 16 LS Contribution 310.32 15.07 4.68 4.68 Total: -1.00 -28.29 310.32 -8.51 -36.79 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -4.87 Total: -1.68 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -2.99 Total: -15.70 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: -0.38 Total: -37.12 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.08 Total: -3.18 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.29 -8.51 -36.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171360229.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.733 kcal (2) G-P(sol) polarization free energy of solvation -28.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds