Wall clock time and date at job start Tue Mar 31 2020 05:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47352 * 2 1 4 4 C 1.52999 * 109.47467 * 120.00019 * 2 1 3 5 5 C 1.52996 * 109.47040 * 295.03408 * 4 2 1 6 6 C 1.50707 * 109.47123 * 185.17025 * 5 4 2 7 7 H 1.08000 * 119.99634 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99885 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00252 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99680 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.46956 * 180.02562 * 10 8 6 12 12 H 1.48498 * 109.47146 * 60.00215 * 10 8 6 13 13 H 1.48501 * 109.46901 * 300.00114 * 10 8 6 14 14 N 1.46900 * 109.46861 * 239.99949 * 2 1 3 15 15 C 1.47893 * 111.00214 * 299.55469 * 14 2 1 16 16 C 1.53994 * 107.06081 * 214.15532 * 15 14 2 17 17 C 1.54589 * 105.13874 * 1.22426 * 16 15 14 18 18 O 1.42906 * 110.72806 * 263.42143 * 17 16 15 19 19 C 1.53001 * 110.72455 * 140.31469 * 17 16 15 20 20 F 1.39898 * 109.46998 * 61.45459 * 19 17 16 21 21 F 1.39903 * 109.47363 * 181.45253 * 19 17 16 22 22 F 1.39895 * 109.47342 * 301.45315 * 19 17 16 23 23 C 1.48532 * 111.00134 * 182.15640 * 14 2 1 24 24 H 1.08996 * 109.47654 * 180.02562 * 1 2 3 25 25 H 1.09011 * 109.46634 * 300.00071 * 1 2 3 26 26 H 1.08998 * 109.47279 * 59.99569 * 1 2 3 27 27 H 1.08999 * 109.47127 * 175.03007 * 4 2 1 28 28 H 1.08997 * 109.47007 * 55.02976 * 4 2 1 29 29 H 1.08996 * 109.47381 * 65.16578 * 5 4 2 30 30 H 1.09004 * 109.47331 * 305.16635 * 5 4 2 31 31 H 0.96998 * 119.99722 * 359.97438 * 9 8 6 32 32 H 1.08999 * 109.91682 * 333.50930 * 15 14 2 33 33 H 1.09006 * 109.91654 * 94.60485 * 15 14 2 34 34 H 1.09001 * 110.30765 * 120.13894 * 16 15 14 35 35 H 1.08997 * 110.30961 * 242.31059 * 16 15 14 36 36 H 0.96704 * 113.99674 * 298.55104 * 18 17 16 37 37 H 1.08998 * 110.67482 * 278.15981 * 23 14 2 38 38 H 1.09004 * 110.66929 * 41.28922 * 23 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6346 0.0685 2.4953 6 6 2.2438 -0.5717 3.7161 7 1 2.8583 -1.4539 3.6133 8 6 2.0166 -0.0312 4.9640 9 7 1.2679 1.0427 5.0891 10 14 2.7712 -0.8252 6.4771 11 1 2.3778 -0.0587 7.6866 12 1 4.2508 -0.8255 6.3502 13 1 2.2844 -2.2230 6.5975 14 7 2.0196 -0.6925 -1.1994 15 6 1.5541 -2.0960 -1.2283 16 6 2.6719 -2.9293 -1.8821 17 6 3.8015 -1.9195 -2.1888 18 8 3.7268 -1.4734 -3.5444 19 6 5.1718 -2.5352 -1.8983 20 9 5.3652 -3.6510 -2.7197 21 9 6.1712 -1.5899 -2.1527 22 9 5.2318 -2.9276 -0.5568 23 6 3.5034 -0.7577 -1.2080 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 3.1264 -0.7989 1.2057 28 1 1.6059 -1.7200 1.2948 29 1 0.5486 0.0680 2.5884 30 1 1.9912 1.0948 2.4071 31 1 0.8758 1.4548 4.3033 32 1 1.3739 -2.4484 -0.2127 33 1 0.6388 -2.1717 -1.8153 34 1 3.0261 -3.6950 -1.1918 35 1 2.3129 -3.3868 -2.8040 36 1 3.8308 -2.1794 -4.1970 37 1 3.9275 0.1760 -1.5774 38 1 3.8842 -0.9872 -0.2128 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172493821.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:00 Heat of formation + Delta-G solvation = -206.289949 kcal Electronic energy + Delta-G solvation = -23695.787676 eV Core-core repulsion = 19736.911139 eV Total energy + Delta-G solvation = -3958.876537 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.134 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.32627 -47.86230 -47.76465 -39.98605 -37.10610 -34.35255 -32.77950 -30.12528 -29.57381 -28.46163 -25.23285 -24.78430 -22.92811 -21.72320 -21.17546 -19.20407 -19.04849 -18.52790 -18.28167 -16.95283 -16.33450 -15.53838 -15.22703 -14.70301 -14.66400 -14.38464 -14.28490 -14.17792 -14.00296 -13.91757 -13.81534 -13.69397 -13.38940 -12.82316 -12.51455 -12.32766 -12.16895 -11.58486 -11.48944 -11.37539 -11.19402 -11.03024 -10.71702 -10.66939 -10.51952 -10.13941 -9.78489 -9.76093 -8.72307 -8.33161 -8.07395 -6.36943 -4.06397 2.37834 3.33567 3.41220 3.42815 3.44440 3.59875 3.63255 3.98909 4.14996 4.34573 4.40842 4.53584 4.92286 5.07832 5.25925 5.38241 5.40774 5.42947 5.52202 5.58466 5.76658 5.80841 5.87403 6.12726 6.16601 6.36154 6.44578 6.55776 6.85606 6.91889 7.03983 7.17610 7.36485 7.50075 8.20055 8.44791 8.87647 9.65617 11.03434 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.020290 B = 0.004895 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.678049 B = 5718.536896 C = 6592.911123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.065 3.935 3 H 0.083 0.917 4 C -0.138 4.138 5 C 0.014 3.986 6 C -0.603 4.603 7 H 0.046 0.954 8 C 0.015 3.985 9 N -0.913 5.913 10 Si 1.067 2.933 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.288 1.288 14 N -0.499 5.499 15 C 0.032 3.968 16 C -0.152 4.152 17 C 0.092 3.908 18 O -0.511 6.511 19 C 0.428 3.572 20 F -0.185 7.185 21 F -0.175 7.175 22 F -0.172 7.172 23 C 0.042 3.958 24 H 0.050 0.950 25 H 0.068 0.932 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.011 0.989 30 H 0.006 0.994 31 H 0.268 0.732 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.381 0.619 37 H 0.101 0.899 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.916 -8.052 -17.428 19.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.043 4.043 3 H 0.102 0.898 4 C -0.176 4.176 5 C -0.024 4.024 6 C -0.641 4.641 7 H 0.064 0.936 8 C -0.188 4.188 9 N -0.549 5.549 10 Si 0.895 3.105 11 H -0.207 1.207 12 H -0.215 1.215 13 H -0.215 1.215 14 N -0.222 5.222 15 C -0.096 4.096 16 C -0.191 4.191 17 C 0.048 3.952 18 O -0.316 6.316 19 C 0.373 3.627 20 F -0.167 7.167 21 F -0.156 7.156 22 F -0.154 7.154 23 C -0.086 4.086 24 H 0.070 0.930 25 H 0.087 0.913 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.030 0.970 30 H 0.025 0.975 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.230 0.770 37 H 0.119 0.881 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.754 -7.053 -15.940 17.830 hybrid contribution 0.672 -1.360 -1.211 1.941 sum 4.426 -8.413 -17.151 19.609 Atomic orbital electron populations 1.21804 0.94098 1.01759 1.01951 1.22039 0.96114 0.98527 0.87594 0.89847 1.22211 0.99924 0.99718 0.95780 1.19179 0.96208 0.94955 0.92032 1.22064 1.34389 1.14609 0.93086 0.93563 1.25822 0.95908 0.95843 1.01266 1.70788 1.30812 1.19588 1.33688 0.83578 0.75844 0.75407 0.75686 1.20716 1.21467 1.21495 1.65168 1.04953 1.13333 1.38776 1.22897 0.97478 0.88270 1.00926 1.23153 0.95235 0.97620 1.03056 1.23242 0.87974 0.97328 0.86674 1.86753 1.94502 1.37728 1.12661 1.21431 0.89792 0.76685 0.74758 1.93165 1.96152 1.54692 1.72689 1.93210 1.64215 1.64374 1.93790 1.93227 1.96799 1.91223 1.34138 1.23385 0.91492 0.97182 0.96520 0.93046 0.91273 0.92686 0.92774 0.92793 0.97045 0.97527 0.92121 0.91548 0.89813 0.89608 0.89062 0.77024 0.88053 0.89621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 8.85 37.15 0.33 -1.81 16 2 C 0.07 1.08 2.54 -67.72 -0.17 0.90 16 3 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 4 C -0.14 -2.73 3.99 -26.73 -0.11 -2.84 16 5 C 0.01 0.34 3.91 -27.88 -0.11 0.23 16 6 C -0.60 -17.13 9.11 -34.44 -0.31 -17.44 16 7 H 0.05 1.30 7.74 -52.49 -0.41 0.89 16 8 C 0.02 0.45 5.46 -17.82 -0.10 0.35 16 9 N -0.91 -27.92 13.65 55.43 0.76 -27.16 16 10 Si 1.07 25.42 29.90 -169.99 -5.08 20.33 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 14 N -0.50 -7.24 5.32 -222.51 -1.18 -8.43 16 15 C 0.03 0.40 5.18 -2.76 -0.01 0.39 16 16 C -0.15 -1.60 6.01 -25.38 -0.15 -1.75 16 17 C 0.09 1.07 0.83 -88.76 -0.07 1.00 16 18 O -0.51 -5.50 13.06 -35.23 -0.46 -5.96 16 19 C 0.43 5.17 2.42 37.16 0.09 5.26 16 20 F -0.19 -2.02 16.90 2.25 0.04 -1.98 16 21 F -0.17 -2.28 17.14 2.25 0.04 -2.24 16 22 F -0.17 -2.36 15.78 2.25 0.04 -2.32 16 23 C 0.04 0.59 5.41 -1.90 -0.01 0.58 16 24 H 0.05 0.75 7.08 -51.93 -0.37 0.38 16 25 H 0.07 1.16 6.68 -51.92 -0.35 0.82 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.05 1.09 5.79 -51.93 -0.30 0.79 16 28 H 0.05 1.06 6.17 -51.93 -0.32 0.74 16 29 H 0.01 0.29 6.69 -51.93 -0.35 -0.05 16 30 H 0.01 0.17 8.01 -51.93 -0.42 -0.25 16 31 H 0.27 8.14 7.22 -40.82 -0.29 7.85 16 32 H 0.07 0.92 5.36 -51.93 -0.28 0.64 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.09 0.89 7.35 -51.93 -0.38 0.51 16 35 H 0.09 0.74 8.08 -51.93 -0.42 0.33 16 36 H 0.38 2.48 8.88 45.56 0.40 2.89 16 37 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.09 1.32 4.73 -51.93 -0.25 1.07 16 LS Contribution 309.13 15.07 4.66 4.66 Total: -1.00 -31.31 309.13 -6.04 -37.35 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -4.21 Total: 0.88 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -0.63 Total: -15.13 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: -0.43 Total: -35.59 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -0.46 Total: -5.96 kcal Atomic # 9 Polarization: -6.66 SS G_CDS: 0.11 Total: -6.54 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -5.08 Total: 20.33 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.31 -6.04 -37.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172493821.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.941 kcal (2) G-P(sol) polarization free energy of solvation -31.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds