Wall clock time and date at job start Tue Mar 31 2020 05:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47352 * 2 1 4 4 C 1.52999 * 109.47467 * 120.00019 * 2 1 3 5 5 C 1.52996 * 109.47040 * 295.03408 * 4 2 1 6 6 C 1.50707 * 109.47123 * 185.17025 * 5 4 2 7 7 H 1.08000 * 119.99634 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99885 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00252 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99680 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.46956 * 180.02562 * 10 8 6 12 12 H 1.48498 * 109.47146 * 60.00215 * 10 8 6 13 13 H 1.48501 * 109.46901 * 300.00114 * 10 8 6 14 14 N 1.46900 * 109.46861 * 239.99949 * 2 1 3 15 15 C 1.47893 * 111.00214 * 299.55469 * 14 2 1 16 16 C 1.53994 * 107.06081 * 214.15532 * 15 14 2 17 17 C 1.54589 * 105.13874 * 1.22426 * 16 15 14 18 18 O 1.42906 * 110.72806 * 263.42143 * 17 16 15 19 19 C 1.53001 * 110.72455 * 140.31469 * 17 16 15 20 20 F 1.39898 * 109.46998 * 61.45459 * 19 17 16 21 21 F 1.39903 * 109.47363 * 181.45253 * 19 17 16 22 22 F 1.39895 * 109.47342 * 301.45315 * 19 17 16 23 23 C 1.48532 * 111.00134 * 182.15640 * 14 2 1 24 24 H 1.08996 * 109.47654 * 180.02562 * 1 2 3 25 25 H 1.09011 * 109.46634 * 300.00071 * 1 2 3 26 26 H 1.08998 * 109.47279 * 59.99569 * 1 2 3 27 27 H 1.08999 * 109.47127 * 175.03007 * 4 2 1 28 28 H 1.08997 * 109.47007 * 55.02976 * 4 2 1 29 29 H 1.08996 * 109.47381 * 65.16578 * 5 4 2 30 30 H 1.09004 * 109.47331 * 305.16635 * 5 4 2 31 31 H 0.96998 * 119.99722 * 359.97438 * 9 8 6 32 32 H 1.08999 * 109.91682 * 333.50930 * 15 14 2 33 33 H 1.09006 * 109.91654 * 94.60485 * 15 14 2 34 34 H 1.09001 * 110.30765 * 120.13894 * 16 15 14 35 35 H 1.08997 * 110.30961 * 242.31059 * 16 15 14 36 36 H 0.96704 * 113.99674 * 298.55104 * 18 17 16 37 37 H 1.08998 * 110.67482 * 278.15981 * 23 14 2 38 38 H 1.09004 * 110.66929 * 41.28922 * 23 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6346 0.0685 2.4953 6 6 2.2438 -0.5717 3.7161 7 1 2.8583 -1.4539 3.6133 8 6 2.0166 -0.0312 4.9640 9 7 1.2679 1.0427 5.0891 10 14 2.7712 -0.8252 6.4771 11 1 2.3778 -0.0587 7.6866 12 1 4.2508 -0.8255 6.3502 13 1 2.2844 -2.2230 6.5975 14 7 2.0196 -0.6925 -1.1994 15 6 1.5541 -2.0960 -1.2283 16 6 2.6719 -2.9293 -1.8821 17 6 3.8015 -1.9195 -2.1888 18 8 3.7268 -1.4734 -3.5444 19 6 5.1718 -2.5352 -1.8983 20 9 5.3652 -3.6510 -2.7197 21 9 6.1712 -1.5899 -2.1527 22 9 5.2318 -2.9276 -0.5568 23 6 3.5034 -0.7577 -1.2080 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 3.1264 -0.7989 1.2057 28 1 1.6059 -1.7200 1.2948 29 1 0.5486 0.0680 2.5884 30 1 1.9912 1.0948 2.4071 31 1 0.8758 1.4548 4.3033 32 1 1.3739 -2.4484 -0.2127 33 1 0.6388 -2.1717 -1.8153 34 1 3.0261 -3.6950 -1.1918 35 1 2.3129 -3.3868 -2.8040 36 1 3.8308 -2.1794 -4.1970 37 1 3.9275 0.1760 -1.5774 38 1 3.8842 -0.9872 -0.2128 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172493821.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:00 Heat of formation + Delta-G solvation = -229.023010 kcal Electronic energy + Delta-G solvation = -23696.773455 eV Core-core repulsion = 19736.911139 eV Total energy + Delta-G solvation = -3959.862316 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.134 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -51.29500 -48.81459 -48.76142 -41.07807 -38.22040 -36.02416 -34.38882 -31.62530 -30.58577 -29.83202 -26.70694 -26.26318 -24.33013 -23.39456 -22.13927 -20.48159 -20.00673 -19.50806 -19.28682 -18.97077 -17.44226 -16.64123 -16.34287 -15.93560 -15.79348 -15.64562 -15.53770 -15.40853 -15.25787 -15.13512 -14.92037 -14.89826 -14.46422 -14.22768 -14.02185 -13.68374 -13.56383 -13.15877 -12.79893 -12.61643 -12.50562 -12.32552 -12.20318 -11.99889 -11.89365 -11.69881 -11.46975 -11.37126 -10.77464 -10.53689 -9.40089 -8.68268 -6.39806 1.42283 1.50165 1.58105 1.77662 2.43172 2.46618 2.54722 2.65084 3.02213 3.05594 3.14962 3.39271 3.47822 3.86009 4.01515 4.07900 4.18016 4.26179 4.41647 4.46261 4.55793 4.63822 4.71341 4.81074 4.86873 4.92573 5.07629 5.12421 5.19844 5.38751 5.47204 5.77123 5.90035 5.99900 6.18334 6.42642 6.58356 7.41418 8.71544 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.020290 B = 0.004895 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.678049 B = 5718.536896 C = 6592.911123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.074 3.926 3 H 0.072 0.928 4 C -0.123 4.123 5 C 0.016 3.984 6 C -0.621 4.621 7 H 0.045 0.955 8 C -0.037 4.037 9 N -0.937 5.937 10 Si 1.114 2.886 11 H -0.282 1.282 12 H -0.272 1.272 13 H -0.269 1.269 14 N -0.495 5.495 15 C 0.027 3.973 16 C -0.146 4.146 17 C 0.104 3.896 18 O -0.518 6.518 19 C 0.430 3.570 20 F -0.175 7.175 21 F -0.182 7.182 22 F -0.184 7.184 23 C 0.034 3.966 24 H 0.061 0.939 25 H 0.047 0.953 26 H 0.073 0.927 27 H 0.048 0.952 28 H 0.057 0.943 29 H -0.001 1.001 30 H -0.015 1.015 31 H 0.256 0.744 32 H 0.052 0.948 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.123 0.877 36 H 0.402 0.598 37 H 0.097 0.903 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.136 -9.727 -18.728 21.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.034 4.034 3 H 0.090 0.910 4 C -0.162 4.162 5 C -0.021 4.021 6 C -0.659 4.659 7 H 0.064 0.936 8 C -0.235 4.235 9 N -0.574 5.574 10 Si 0.935 3.065 11 H -0.207 1.207 12 H -0.197 1.197 13 H -0.194 1.194 14 N -0.218 5.218 15 C -0.100 4.100 16 C -0.184 4.184 17 C 0.059 3.941 18 O -0.327 6.327 19 C 0.375 3.625 20 F -0.157 7.157 21 F -0.164 7.164 22 F -0.166 7.166 23 C -0.094 4.094 24 H 0.080 0.920 25 H 0.066 0.934 26 H 0.092 0.908 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.017 0.983 30 H 0.003 0.997 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.120 0.880 34 H 0.106 0.894 35 H 0.142 0.858 36 H 0.254 0.746 37 H 0.115 0.885 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.976 -8.749 -17.288 19.779 hybrid contribution 0.618 -0.834 -0.886 1.365 sum 4.594 -9.583 -18.174 21.054 Atomic orbital electron populations 1.21735 0.93054 1.02393 1.01828 1.21831 0.96873 0.97747 0.86979 0.91026 1.22023 0.99612 0.99393 0.95125 1.19096 0.95094 0.94311 0.93628 1.22518 1.34204 1.14617 0.94516 0.93640 1.27360 0.95607 0.95615 1.04906 1.70918 1.32429 1.20933 1.33138 0.82984 0.76030 0.75431 0.72081 1.20729 1.19687 1.19368 1.65173 1.05257 1.14696 1.36669 1.23014 0.99070 0.87186 1.00748 1.23182 0.93834 0.96959 1.04455 1.22972 0.88002 0.96313 0.86786 1.86719 1.94399 1.39093 1.12469 1.21502 0.89820 0.76823 0.74347 1.93184 1.96112 1.54120 1.72244 1.93196 1.64640 1.64756 1.93787 1.93206 1.96849 1.91338 1.35162 1.23355 0.91176 0.98238 0.96617 0.92022 0.93369 0.90769 0.93392 0.92456 0.98260 0.99679 0.93452 0.92979 0.88026 0.89396 0.85834 0.74639 0.88491 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.00 8.85 71.98 0.64 -3.36 16 2 C 0.07 2.45 2.54 44.91 0.11 2.56 16 3 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 4 C -0.12 -4.93 3.99 30.59 0.12 -4.81 16 5 C 0.02 0.84 3.91 29.85 0.12 0.95 16 6 C -0.62 -35.77 9.11 25.60 0.23 -35.53 16 7 H 0.05 2.57 7.74 -2.91 -0.02 2.55 16 8 C -0.04 -2.18 5.46 84.65 0.46 -1.72 16 9 N -0.94 -58.48 13.65 21.45 0.29 -58.19 16 10 Si 1.11 50.77 29.90 68.60 2.05 52.82 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 12 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 13 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 14 N -0.50 -13.70 5.32 -857.87 -4.56 -18.27 16 15 C 0.03 0.62 5.18 86.45 0.45 1.07 16 16 C -0.15 -2.64 6.01 31.47 0.19 -2.45 16 17 C 0.10 2.20 0.83 -9.59 -0.01 2.19 16 18 O -0.52 -9.66 13.06 -148.98 -1.95 -11.61 16 19 C 0.43 9.66 2.42 71.98 0.17 9.83 16 20 F -0.18 -3.37 16.90 44.97 0.76 -2.61 16 21 F -0.18 -4.57 17.14 44.97 0.77 -3.79 16 22 F -0.18 -4.85 15.78 44.97 0.71 -4.14 16 23 C 0.03 0.93 5.41 86.65 0.47 1.40 16 24 H 0.06 1.71 7.08 -2.39 -0.02 1.70 16 25 H 0.05 1.64 6.68 -2.38 -0.02 1.63 16 26 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.05 1.97 5.79 -2.39 -0.01 1.96 16 28 H 0.06 2.25 6.17 -2.39 -0.01 2.24 16 29 H 0.00 -0.04 6.69 -2.39 -0.02 -0.06 16 30 H -0.02 -0.83 8.01 -2.38 -0.02 -0.85 16 31 H 0.26 16.12 7.22 -92.71 -0.67 15.45 16 32 H 0.05 1.36 5.36 -2.39 -0.01 1.35 16 33 H 0.10 1.99 8.14 -2.38 -0.02 1.98 16 34 H 0.09 1.59 7.35 -2.39 -0.02 1.57 16 35 H 0.12 1.46 8.08 -2.39 -0.02 1.44 16 36 H 0.40 3.77 8.88 -74.05 -0.66 3.12 16 37 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 38 H 0.07 2.12 4.73 -2.38 -0.01 2.11 16 Total: -1.00 -67.51 309.13 1.57 -65.94 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: 0.54 Total: 9.71 kcal Atomic # 6 Polarization: -32.82 SS G_CDS: 2.96 Total: -29.86 kcal Atomic # 7 Polarization: -72.18 SS G_CDS: -4.27 Total: -76.45 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -1.95 Total: -11.61 kcal Atomic # 9 Polarization: -12.79 SS G_CDS: 2.24 Total: -10.55 kcal Atomic # 14 Polarization: 50.77 SS G_CDS: 2.05 Total: 52.82 kcal Total: -67.51 1.57 -65.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172493821.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.078 kcal (2) G-P(sol) polarization free energy of solvation -67.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds