Wall clock time and date at job start Tue Mar 31 2020 05:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47241 * 2 1 4 4 C 1.53000 * 109.47361 * 119.99914 * 2 1 3 5 5 C 1.53001 * 109.47355 * 184.99974 * 4 2 1 6 6 C 1.50694 * 109.47168 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00563 * 0.02562 * 6 5 4 8 8 C 1.37885 * 119.99902 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99913 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99766 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46985 * 179.97438 * 10 8 6 12 12 H 1.48494 * 109.47276 * 299.99832 * 10 8 6 13 13 H 1.48498 * 109.47150 * 60.00043 * 10 8 6 14 14 N 1.46893 * 109.47411 * 240.00372 * 2 1 3 15 15 C 1.47016 * 110.99564 * 296.36345 * 14 2 1 16 16 C 1.53107 * 109.25599 * 182.38892 * 15 14 2 17 17 O 1.43016 * 109.25677 * 303.15052 * 16 15 14 18 18 C 1.43014 * 113.73840 * 58.67431 * 17 16 15 19 19 H 1.09003 * 109.50719 * 61.26276 * 18 17 16 20 20 C 1.52996 * 109.54152 * 181.37163 * 18 17 16 21 21 F 1.39896 * 109.47307 * 179.80390 * 20 18 17 22 22 F 1.39907 * 109.47018 * 299.80137 * 20 18 17 23 23 F 1.39896 * 109.47335 * 59.79904 * 20 18 17 24 24 C 1.47020 * 111.00151 * 59.99384 * 14 2 1 25 25 H 1.08998 * 109.47421 * 59.99709 * 1 2 3 26 26 H 1.09004 * 109.47241 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47210 * 299.99420 * 1 2 3 28 28 H 1.09002 * 109.46807 * 65.00265 * 4 2 1 29 29 H 1.08998 * 109.47285 * 304.99867 * 4 2 1 30 30 H 1.09007 * 109.46922 * 59.99890 * 5 4 2 31 31 H 1.09003 * 109.46836 * 300.00646 * 5 4 2 32 32 H 0.97001 * 119.99646 * 179.97438 * 9 8 6 33 33 H 1.08994 * 109.50967 * 302.32099 * 15 14 2 34 34 H 1.08996 * 109.50554 * 62.45919 * 15 14 2 35 35 H 1.09004 * 109.50367 * 183.21556 * 16 15 14 36 36 H 1.08999 * 109.53988 * 63.10726 * 16 15 14 37 37 H 1.08996 * 109.50315 * 297.54950 * 24 14 2 38 38 H 1.09001 * 109.50292 * 57.67934 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6133 1.3137 6 6 4.0672 -1.3242 2.5438 7 1 3.3689 -1.8053 3.2125 8 6 5.4185 -1.3604 2.8155 9 7 6.2690 -0.7750 2.0009 10 14 6.0412 -2.2410 4.3407 11 1 7.5212 -2.1363 4.4031 12 1 5.4487 -1.6153 5.5501 13 1 5.6487 -3.6720 4.2809 14 7 2.0196 -0.6924 -1.1994 15 6 1.6206 -2.1073 -1.1907 16 6 2.2006 -2.8031 -2.4250 17 8 1.7569 -2.1227 -3.6021 18 6 2.1289 -0.7424 -3.6439 19 1 3.2156 -0.6578 -3.6332 20 6 1.5792 -0.1027 -4.9204 21 9 1.9400 1.2484 -4.9577 22 9 2.1103 -0.7582 -6.0365 23 9 0.1847 -0.2136 -4.9344 24 6 1.5482 -0.0258 -2.4220 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8901 28 1 1.7517 -1.7715 1.2055 29 1 1.6054 -0.2617 2.1370 30 1 3.8532 0.4371 1.3573 31 1 3.9994 -1.0727 0.4259 32 1 7.2196 -0.8001 2.1923 33 1 2.0018 -2.5875 -0.2895 34 1 0.5332 -2.1789 -1.2098 35 1 1.8602 -3.8383 -2.4528 36 1 3.2893 -2.7791 -2.3792 37 1 0.4596 -0.0641 -2.4607 38 1 1.8766 1.0136 -2.4196 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172500739.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:09 Heat of formation + Delta-G solvation = -200.664667 kcal Electronic energy + Delta-G solvation = -23493.698943 eV Core-core repulsion = 19535.066337 eV Total energy + Delta-G solvation = -3958.632606 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.134 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.20428 -47.73403 -47.66395 -39.96526 -37.03638 -33.46533 -32.25211 -31.56427 -29.43505 -27.51299 -25.79620 -24.66896 -23.39614 -21.77019 -20.77054 -19.28582 -18.65986 -18.37123 -17.93160 -16.28671 -16.10576 -16.09009 -15.29369 -14.79399 -14.66130 -14.49211 -14.43464 -14.33825 -14.11081 -13.84643 -13.81930 -13.80161 -13.29512 -12.88190 -12.39750 -12.11722 -11.98051 -11.68520 -11.58677 -11.36613 -11.16237 -10.89178 -10.62196 -10.50982 -10.29508 -9.86251 -9.70856 -9.30481 -8.98892 -8.32074 -8.06618 -5.96095 -3.98336 2.37953 3.22540 3.33326 3.38458 3.40297 3.52838 3.87794 4.16796 4.41784 4.47512 4.62104 4.86674 5.01024 5.16002 5.25672 5.33244 5.39439 5.47189 5.49976 5.56158 5.62369 5.88840 5.92989 6.06710 6.15546 6.23355 6.52083 6.72094 6.75493 7.10082 7.21226 7.27480 7.75743 7.94684 8.10318 8.47294 9.10059 9.65139 11.14680 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.025961 B = 0.004197 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.267437 B = 6669.507407 C = 6951.147673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.082 3.918 3 H 0.083 0.917 4 C -0.106 4.106 5 C 0.029 3.971 6 C -0.523 4.523 7 H 0.051 0.949 8 C 0.059 3.941 9 N -0.893 5.893 10 Si 0.887 3.113 11 H -0.288 1.288 12 H -0.278 1.278 13 H -0.278 1.278 14 N -0.512 5.512 15 C 0.008 3.992 16 C 0.066 3.934 17 O -0.372 6.372 18 C 0.052 3.948 19 H 0.113 0.887 20 C 0.466 3.534 21 F -0.174 7.174 22 F -0.176 7.176 23 F -0.177 7.177 24 C 0.019 3.981 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.011 0.989 31 H 0.030 0.970 32 H 0.260 0.740 33 H 0.108 0.892 34 H 0.043 0.957 35 H 0.106 0.894 36 H 0.071 0.929 37 H 0.055 0.945 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.913 0.315 -12.223 16.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.025 4.025 3 H 0.101 0.899 4 C -0.144 4.144 5 C -0.008 4.008 6 C -0.561 4.561 7 H 0.069 0.931 8 C -0.142 4.142 9 N -0.533 5.533 10 Si 0.715 3.285 11 H -0.213 1.213 12 H -0.204 1.204 13 H -0.204 1.204 14 N -0.236 5.236 15 C -0.119 4.119 16 C -0.009 4.009 17 O -0.291 6.291 18 C -0.008 4.008 19 H 0.131 0.869 20 C 0.412 3.588 21 F -0.156 7.156 22 F -0.158 7.158 23 F -0.159 7.159 24 C -0.110 4.110 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.029 0.971 31 H 0.048 0.952 32 H 0.069 0.931 33 H 0.126 0.874 34 H 0.061 0.939 35 H 0.124 0.876 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.316 0.289 -12.410 16.141 hybrid contribution -0.396 -0.251 0.860 0.979 sum -10.712 0.037 -11.550 15.753 Atomic orbital electron populations 1.22518 0.98500 1.01834 1.01731 1.21924 0.91378 0.98925 0.90319 0.89872 1.21812 1.01001 0.98372 0.93204 1.19011 0.87824 0.96947 0.97003 1.21273 0.91872 1.34406 1.08585 0.93123 1.24989 0.97117 0.95668 0.96471 1.69962 1.02323 1.44053 1.36919 0.86742 0.77660 0.80242 0.83811 1.21348 1.20374 1.20360 1.62374 1.58745 1.01675 1.00772 1.22941 0.98680 0.90017 1.00307 1.22871 1.00141 0.95528 0.82404 1.87935 1.78883 1.19176 1.43080 1.23140 1.01734 0.85074 0.90897 0.86949 1.20163 0.76100 0.76608 0.85971 1.93205 1.91633 1.34002 1.96747 1.93203 1.86071 1.80882 1.55609 1.93185 1.30144 1.95757 1.96795 1.22711 0.98914 0.99397 0.89933 0.93185 0.92619 0.91888 0.93083 0.92851 0.97054 0.95211 0.93070 0.87432 0.93871 0.87588 0.91033 0.92676 0.88610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.44 8.49 37.15 0.32 -2.13 16 2 C 0.08 1.30 2.43 -67.72 -0.16 1.13 16 3 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 4 C -0.11 -2.03 4.32 -26.73 -0.12 -2.15 16 5 C 0.03 0.72 4.86 -27.89 -0.14 0.59 16 6 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 7 H 0.05 1.36 7.74 -52.49 -0.41 0.95 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 10 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 N -0.51 -7.82 4.21 -226.33 -0.95 -8.77 16 15 C 0.01 0.12 4.88 -3.70 -0.02 0.10 16 16 C 0.07 0.84 7.01 37.21 0.26 1.10 16 17 O -0.37 -5.05 10.36 -35.23 -0.37 -5.41 16 18 C 0.05 0.66 2.78 -26.68 -0.07 0.59 16 19 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 20 C 0.47 5.75 2.85 37.16 0.11 5.85 16 21 F -0.17 -2.08 16.86 2.25 0.04 -2.05 16 22 F -0.18 -2.27 17.26 2.25 0.04 -2.24 16 23 F -0.18 -2.29 16.69 2.25 0.04 -2.25 16 24 C 0.02 0.25 4.23 -3.71 -0.02 0.24 16 25 H 0.05 0.60 6.46 -51.93 -0.34 0.27 16 26 H 0.05 0.72 6.54 -51.93 -0.34 0.38 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.95 6.02 -51.93 -0.31 0.64 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.01 0.30 8.14 -51.92 -0.42 -0.12 16 31 H 0.03 0.78 7.75 -51.93 -0.40 0.38 16 32 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.11 1.66 6.00 -51.93 -0.31 1.35 16 34 H 0.04 0.57 6.52 -51.93 -0.34 0.23 16 35 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.06 0.71 6.02 -51.93 -0.31 0.40 16 38 H 0.10 1.19 7.90 -51.93 -0.41 0.78 16 LS Contribution 312.22 15.07 4.71 4.71 Total: -1.00 -29.55 312.22 -6.30 -35.84 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -5.26 Total: -2.55 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -0.25 Total: -7.85 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: -0.22 Total: -34.57 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: -0.37 Total: -5.41 kcal Atomic # 9 Polarization: -6.64 SS G_CDS: 0.11 Total: -6.53 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.55 -6.30 -35.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172500739.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.820 kcal (2) G-P(sol) polarization free energy of solvation -29.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds