Wall clock time and date at job start Tue Mar 31 2020 05:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46905 * 109.47223 * 2 1 4 4 C 1.46896 * 110.99877 * 298.01565 * 3 2 1 5 5 C 1.50703 * 109.47417 * 293.95002 * 4 3 2 6 6 H 1.07997 * 119.99451 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00304 * 179.72786 * 5 4 3 8 8 N 1.31509 * 120.00258 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99791 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47140 * 90.00597 * 9 7 5 11 11 H 1.48507 * 109.46955 * 209.99836 * 9 7 5 12 12 H 1.48494 * 109.47307 * 330.00456 * 9 7 5 13 13 C 1.46901 * 110.99816 * 61.96664 * 3 2 1 14 14 C 1.54337 * 110.82175 * 171.16446 * 13 3 2 15 15 C 1.51389 * 105.17139 * 215.41720 * 14 13 3 16 16 C 1.38506 * 130.33731 * 197.19340 * 15 14 13 17 17 C 1.38248 * 120.23200 * 180.02562 * 16 15 14 18 18 F 1.35102 * 120.07398 * 180.02562 * 17 16 15 19 19 C 1.38691 * 119.85739 * 359.97438 * 17 16 15 20 20 F 1.35103 * 120.06936 * 179.97438 * 19 17 16 21 21 C 1.38249 * 119.86192 * 0.02562 * 19 17 16 22 22 C 1.38221 * 109.75105 * 17.19310 * 15 14 13 23 23 C 1.51384 * 109.75987 * 0.02562 * 22 15 14 24 24 H 1.08991 * 109.47052 * 185.34394 * 1 2 3 25 25 H 1.08997 * 109.46559 * 305.34759 * 1 2 3 26 26 H 1.08998 * 109.47051 * 65.34163 * 1 2 3 27 27 H 1.09002 * 109.47123 * 240.00520 * 2 1 3 28 28 H 1.08991 * 109.47162 * 120.00458 * 2 1 3 29 29 H 1.09005 * 109.46988 * 173.95491 * 4 3 2 30 30 H 1.08997 * 109.47420 * 53.95717 * 4 3 2 31 31 H 0.97000 * 120.00435 * 179.97438 * 8 7 5 32 32 H 1.08996 * 110.72911 * 294.78792 * 13 3 2 33 33 H 1.09005 * 110.30258 * 334.33837 * 14 13 3 34 34 H 1.08994 * 110.30463 * 96.49472 * 14 13 3 35 35 H 1.08008 * 119.88318 * 359.97438 * 16 15 14 36 36 H 1.08004 * 119.88538 * 180.02562 * 21 19 17 37 37 H 1.09001 * 110.30331 * 223.87779 * 23 22 15 38 38 H 1.08996 * 110.30522 * 101.72243 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5879 2.0961 -1.2107 5 6 2.2499 1.4818 -2.4172 6 1 2.9237 0.6465 -2.2965 7 6 1.9907 1.9823 -3.6754 8 7 2.5680 1.4459 -4.7283 9 14 0.8182 3.4213 -3.8848 10 1 1.5783 4.6947 -3.8063 11 1 0.1482 3.3256 -5.2067 12 1 -0.2039 3.3878 -2.8081 13 6 1.5875 2.0962 1.2106 14 6 2.2805 3.4712 1.3159 15 6 2.5154 3.6841 2.7962 16 6 2.8026 4.8413 3.5011 17 6 2.9803 4.7957 4.8713 18 9 3.2599 5.9265 5.5558 19 6 2.8699 3.5868 5.5421 20 9 3.0432 3.5372 6.8810 21 6 2.5831 2.4324 4.8375 22 6 2.4053 2.4793 3.4647 23 6 2.0895 1.3743 2.4793 24 1 -0.3633 -1.0231 0.0957 25 1 -0.3632 0.5945 0.8382 26 1 -0.3633 0.4287 -0.9339 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.8712 3.1460 -1.1360 30 1 0.5054 2.0182 -1.3112 31 1 2.3853 1.7978 -5.6135 32 1 0.5030 2.2031 1.2287 33 1 3.2298 3.4584 0.7803 34 1 1.6323 4.2528 0.9196 35 1 2.8889 5.7824 2.9782 36 1 2.4966 1.4908 5.3595 37 1 1.3105 0.7239 2.8771 38 1 2.9875 0.7979 2.2568 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173483396.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:46 Heat of formation + Delta-G solvation = -59.762215 kcal Electronic energy + Delta-G solvation = -21802.520807 eV Core-core repulsion = 18280.767414 eV Total energy + Delta-G solvation = -3521.753393 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.129 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.55663 -48.63843 -40.30170 -37.58792 -34.15889 -32.47954 -31.65803 -29.81040 -28.51873 -27.19199 -26.22548 -23.33844 -22.77019 -21.37499 -21.14913 -18.89299 -17.77867 -17.25496 -16.79596 -16.72097 -16.42328 -15.82570 -15.06289 -14.90624 -14.70863 -14.39391 -14.08720 -13.98732 -13.72994 -12.97123 -12.78679 -12.68490 -12.50792 -12.38482 -11.98934 -11.89170 -11.54927 -11.44137 -11.11119 -10.92819 -10.84590 -10.60618 -10.33027 -10.02029 -9.91949 -9.31064 -9.11991 -8.61152 -8.49014 -7.45723 -6.09473 -4.06826 0.80216 0.87353 3.21312 3.23652 3.31858 3.32542 3.60811 4.06774 4.17928 4.37007 4.43816 4.74271 4.92100 4.92950 4.96569 5.22446 5.31298 5.50360 5.59555 5.62935 5.67431 5.74956 5.76905 5.80725 5.88495 5.96653 6.01344 6.13274 6.20494 6.36883 6.38290 6.50428 6.64022 6.72876 6.88539 6.99211 7.54318 7.81609 7.96999 8.60051 8.99260 9.52130 11.03626 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.025751 B = 0.004154 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.079697 B = 6738.409243 C = 7461.598275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.058 3.942 3 N -0.516 5.516 4 C 0.157 3.843 5 C -0.508 4.508 6 H 0.081 0.919 7 C 0.070 3.930 8 N -0.900 5.900 9 Si 0.871 3.129 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.268 1.268 13 C 0.080 3.920 14 C -0.077 4.077 15 C -0.064 4.064 16 C -0.117 4.117 17 C 0.063 3.937 18 F -0.132 7.132 19 C 0.061 3.939 20 F -0.132 7.132 21 C -0.116 4.116 22 C -0.070 4.070 23 C -0.074 4.074 24 H 0.050 0.950 25 H 0.044 0.956 26 H 0.064 0.936 27 H 0.089 0.911 28 H 0.058 0.942 29 H 0.025 0.975 30 H -0.004 1.004 31 H 0.263 0.737 32 H 0.051 0.949 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.076 0.924 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.288 2.700 17.560 17.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.070 4.070 3 N -0.239 5.239 4 C 0.031 3.969 5 C -0.546 4.546 6 H 0.099 0.901 7 C -0.132 4.132 8 N -0.539 5.539 9 Si 0.698 3.302 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.193 1.193 13 C -0.029 4.029 14 C -0.114 4.114 15 C -0.065 4.065 16 C -0.135 4.135 17 C 0.043 3.957 18 F -0.110 7.110 19 C 0.041 3.959 20 F -0.111 7.111 21 C -0.135 4.135 22 C -0.071 4.071 23 C -0.112 4.112 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.083 0.917 27 H 0.107 0.893 28 H 0.076 0.924 29 H 0.043 0.957 30 H 0.013 0.987 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.124 0.876 34 H 0.096 0.904 35 H 0.162 0.838 36 H 0.160 0.840 37 H 0.094 0.906 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.742 2.743 17.421 17.722 hybrid contribution -1.418 1.131 0.179 1.822 sum -3.159 3.874 17.600 18.296 Atomic orbital electron populations 1.22396 0.99379 1.01070 1.01929 1.22044 0.92073 0.90681 1.02221 1.62331 1.58673 1.01864 1.01040 1.20246 0.94280 0.94318 0.88098 1.20996 1.27185 1.17757 0.88656 0.90123 1.24876 0.95768 0.96637 0.95921 1.69882 1.43616 1.41798 0.98566 0.86931 0.81920 0.83633 0.77696 1.20132 1.21245 1.19276 1.22247 0.96841 0.92816 0.91047 1.21201 1.03030 0.97471 0.89715 1.20621 0.96618 0.92024 0.97238 1.20482 1.02076 1.00046 0.90929 1.17420 1.06360 0.81428 0.90458 1.91513 1.91376 1.48622 1.79518 1.17406 1.07109 0.93566 0.77863 1.91511 1.93244 1.97095 1.29233 1.20434 1.02175 0.97222 0.93636 1.20564 0.97530 0.96619 0.92363 1.21194 1.02463 0.95425 0.92076 0.93090 0.93655 0.91703 0.89269 0.92400 0.95743 0.98689 0.92654 0.93112 0.87631 0.90442 0.83831 0.83953 0.90584 0.88162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.93 9.24 37.16 0.34 -2.59 16 2 C 0.06 0.97 5.62 -3.82 -0.02 0.95 16 3 N -0.52 -9.44 4.51 -226.39 -1.02 -10.46 16 4 C 0.16 3.45 3.47 -4.98 -0.02 3.43 16 5 C -0.51 -13.52 9.04 -34.44 -0.31 -13.83 16 6 H 0.08 2.35 7.36 -52.49 -0.39 1.97 16 7 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 8 N -0.90 -26.66 13.96 55.43 0.77 -25.89 16 9 Si 0.87 20.58 27.47 -169.99 -4.67 15.91 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.06 6.53 56.52 0.37 -5.69 16 13 C 0.08 1.18 2.23 -66.30 -0.15 1.03 16 14 C -0.08 -1.08 5.18 -26.84 -0.14 -1.22 16 15 C -0.06 -0.81 6.14 -104.19 -0.64 -1.45 16 16 C -0.12 -1.37 10.02 -39.48 -0.40 -1.77 16 17 C 0.06 0.79 7.31 -39.41 -0.29 0.51 16 18 F -0.13 -1.72 17.19 2.25 0.04 -1.68 16 19 C 0.06 0.74 7.31 -39.41 -0.29 0.46 16 20 F -0.13 -1.69 17.19 2.25 0.04 -1.65 16 21 C -0.12 -1.28 10.02 -39.48 -0.40 -1.68 16 22 C -0.07 -0.84 6.14 -104.19 -0.64 -1.48 16 23 C -0.07 -0.90 5.12 -26.83 -0.14 -1.04 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.04 0.64 6.31 -51.93 -0.33 0.31 16 26 H 0.06 1.17 6.60 -51.93 -0.34 0.82 16 27 H 0.09 1.74 6.81 -51.93 -0.35 1.39 16 28 H 0.06 0.82 6.83 -51.93 -0.35 0.47 16 29 H 0.02 0.54 6.47 -51.93 -0.34 0.20 16 30 H 0.00 -0.10 5.21 -51.93 -0.27 -0.37 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.05 0.76 6.59 -51.93 -0.34 0.42 16 33 H 0.11 1.61 8.08 -51.93 -0.42 1.19 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.14 1.43 8.06 -52.48 -0.42 1.01 16 36 H 0.14 1.26 8.06 -52.48 -0.42 0.83 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.10 1.26 7.75 -51.93 -0.40 0.85 16 LS Contribution 310.21 15.07 4.67 4.67 Total: -1.00 -28.51 310.21 -8.16 -36.67 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -4.82 Total: -0.73 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: -3.17 Total: -16.84 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: -0.25 Total: -36.35 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.08 Total: -3.33 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.67 Total: 15.91 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.51 -8.16 -36.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173483396.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.092 kcal (2) G-P(sol) polarization free energy of solvation -28.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds