Wall clock time and date at job start Tue Mar 31 2020 06:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50707 * 109.46952 * 2 1 4 4 O 1.33490 * 126.82724 * 269.97563 * 3 2 1 5 5 N 1.20666 * 113.15380 * 180.02562 * 4 3 2 6 6 C 1.30015 * 112.29823 * 359.68552 * 5 4 3 7 7 C 1.50698 * 127.33370 * 180.29834 * 6 5 4 8 8 C 1.37355 * 126.82576 * 89.99887 * 3 2 1 9 9 C 1.47398 * 128.56778 * 359.97438 * 8 3 2 10 10 O 1.21610 * 120.00362 * 89.72229 * 9 8 3 11 11 N 1.34784 * 119.99800 * 269.99573 * 9 8 3 12 12 C 1.46499 * 119.99893 * 179.72628 * 11 9 8 13 13 C 1.53003 * 109.46708 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.46990 * 180.02562 * 13 12 11 15 15 N 1.46497 * 109.47302 * 179.97438 * 14 13 12 16 16 C 1.36941 * 119.99996 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00189 * 0.02562 * 16 15 14 18 18 C 1.38818 * 119.99555 * 179.97438 * 16 15 14 19 19 N 1.31608 * 120.00177 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99589 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47308 * 89.99679 * 20 18 16 22 22 H 1.48500 * 109.47240 * 209.99877 * 20 18 16 23 23 H 1.48502 * 109.47110 * 330.00082 * 20 18 16 24 24 H 1.09007 * 109.47036 * 59.99829 * 1 2 3 25 25 H 1.08998 * 109.47280 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47632 * 300.00234 * 1 2 3 27 27 H 1.08995 * 109.47004 * 240.00133 * 2 1 3 28 28 H 1.08996 * 109.47208 * 119.99721 * 2 1 3 29 29 H 1.08998 * 109.47329 * 270.19740 * 7 6 5 30 30 H 1.09002 * 109.47139 * 30.19667 * 7 6 5 31 31 H 1.08997 * 109.47469 * 150.19695 * 7 6 5 32 32 H 0.97005 * 119.99846 * 359.72416 * 11 9 8 33 33 H 1.08998 * 109.47134 * 299.99552 * 12 11 9 34 34 H 1.08994 * 109.47397 * 59.99843 * 12 11 9 35 35 H 1.09000 * 109.47195 * 299.99415 * 13 12 11 36 36 H 1.08994 * 109.47584 * 59.99634 * 13 12 11 37 37 H 1.09005 * 109.47033 * 299.99952 * 14 13 12 38 38 H 1.08999 * 109.47677 * 59.99180 * 14 13 12 39 39 H 0.97001 * 120.00220 * 359.97438 * 15 14 13 40 40 H 0.97002 * 119.99867 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2995 2.1751 -1.0685 5 7 2.6906 3.2804 -0.7833 6 6 2.7492 3.4665 0.5021 7 6 3.1822 4.7153 1.2260 8 6 2.3067 2.1971 1.0995 9 6 2.1823 1.8468 2.5258 10 8 3.1221 1.3463 3.1133 11 7 1.0251 2.0762 3.1776 12 6 0.8994 1.7226 4.5937 13 6 -0.5033 2.0835 5.0869 14 6 -0.6343 1.7147 6.5660 15 7 -1.9771 2.0608 7.0384 16 6 -2.3283 1.8198 8.3399 17 1 -1.6152 1.3751 9.0182 18 6 -3.6006 2.1483 8.7877 19 7 -4.4691 2.6916 7.9615 20 14 -4.0794 1.8203 10.5632 21 1 -3.7511 3.0080 11.3920 22 1 -5.5376 1.5502 10.6409 23 1 -3.3301 0.6419 11.0684 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 4.2572 4.6789 1.4023 30 1 2.9429 5.5885 0.6191 31 1 2.6597 4.7819 2.1802 32 1 0.2754 2.4755 2.7090 33 1 1.0631 0.6520 4.7167 34 1 1.6412 2.2725 5.1727 35 1 -0.6674 3.1540 4.9638 36 1 -1.2448 1.5333 4.5078 37 1 -0.4699 0.6442 6.6895 38 1 0.1072 2.2652 7.1449 39 1 -2.6176 2.4606 6.4294 40 1 -5.3582 2.9208 8.2743 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175776270.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:30 Heat of formation + Delta-G solvation = 15.591689 kcal Electronic energy + Delta-G solvation = -21350.938015 eV Core-core repulsion = 17975.832479 eV Total energy + Delta-G solvation = -3375.105536 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.14544 -39.71361 -36.13365 -35.18081 -34.81486 -34.39298 -32.04496 -30.72383 -29.59096 -29.04550 -26.02272 -24.52279 -23.90146 -22.52260 -21.32523 -20.86643 -19.99497 -18.14642 -18.01586 -17.05162 -16.55419 -16.13631 -15.78658 -15.15230 -14.78114 -14.46007 -14.21378 -13.80053 -13.68973 -13.49933 -13.32012 -13.24978 -13.04665 -12.87468 -12.50627 -11.98801 -11.87106 -11.73935 -11.24023 -11.03865 -10.96216 -10.86178 -10.67390 -10.37226 -10.16445 -10.06652 -9.74451 -9.69702 -9.21662 -8.91167 -6.97130 -5.80342 -3.09456 1.01357 1.63065 2.20828 2.52225 3.09271 3.41965 3.47234 3.48844 3.82322 3.92521 4.47708 4.52792 4.56105 4.71771 4.79133 4.89533 5.05224 5.13493 5.17017 5.22900 5.31896 5.38629 5.42720 5.54153 5.54437 5.54875 5.72434 5.77892 5.88347 5.98315 6.12702 6.26607 6.29566 6.73415 6.77577 7.27818 7.67292 7.93760 7.95585 8.38538 9.49807 10.06423 10.40929 11.42625 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.027242 B = 0.002790 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.569468 B =10034.023876 C =10334.201482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.049 4.049 3 C 0.023 3.977 4 O 0.097 5.903 5 N -0.357 5.357 6 C 0.055 3.945 7 C -0.079 4.079 8 C -0.250 4.250 9 C 0.598 3.402 10 O -0.526 6.526 11 N -0.714 5.714 12 C 0.121 3.879 13 C -0.138 4.138 14 C 0.157 3.843 15 N -0.734 5.734 16 C -0.241 4.241 17 H 0.071 0.929 18 C -0.014 4.014 19 N -0.934 5.934 20 Si 0.908 3.092 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.403 0.597 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.384 0.616 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.554 -1.641 -18.970 22.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.087 4.087 3 C -0.040 4.040 4 O 0.035 5.965 5 N -0.063 5.063 6 C -0.107 4.107 7 C -0.136 4.136 8 C -0.257 4.257 9 C 0.381 3.619 10 O -0.402 6.402 11 N -0.365 5.365 12 C -0.002 4.002 13 C -0.176 4.176 14 C 0.028 3.972 15 N -0.378 5.378 16 C -0.372 4.372 17 H 0.089 0.911 18 C -0.210 4.210 19 N -0.583 5.583 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 H 0.082 0.918 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.114 0.886 28 H 0.118 0.882 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.237 0.763 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.217 0.783 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.500 -1.317 -19.405 23.676 hybrid contribution -0.973 -0.027 1.271 1.601 sum 12.527 -1.344 -18.135 22.081 Atomic orbital electron populations 1.21807 0.92574 1.03456 1.03052 1.20297 0.97261 0.85739 1.05413 1.24693 0.97969 0.96279 0.85104 1.84533 1.61497 1.17478 1.32952 1.73623 1.17470 0.98642 1.16587 1.24769 1.00396 0.96519 0.89008 1.20241 1.02579 0.91132 0.99646 1.21947 1.13094 0.95488 0.95207 1.16854 0.82916 0.78249 0.83856 1.90840 1.38563 1.43068 1.67724 1.46071 1.14580 1.63307 1.12529 1.21454 0.98354 1.01169 0.79209 1.21953 0.94607 1.02229 0.98815 1.20515 0.89210 0.97367 0.90064 1.42333 1.09799 1.75235 1.10445 1.19243 0.96686 1.34054 0.87244 0.91078 1.24751 0.96496 1.01636 0.98108 1.69653 1.06003 1.48305 1.34315 0.86170 0.77488 0.77863 0.84558 1.21670 1.21735 1.20693 0.91755 0.90646 0.91843 0.88595 0.88161 0.89542 0.89819 0.89682 0.76262 0.90978 0.90994 0.91212 0.91194 0.96005 0.96024 0.78296 0.93479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.89 37.16 0.37 -0.56 16 2 C -0.05 -0.34 6.38 -27.88 -0.18 -0.51 16 3 C 0.02 0.23 6.80 -34.63 -0.24 -0.01 16 4 O 0.10 1.04 11.06 18.66 0.21 1.25 16 5 N -0.36 -4.22 12.01 34.78 0.42 -3.80 16 6 C 0.06 0.61 7.59 -79.77 -0.61 0.01 16 7 C -0.08 -0.67 10.49 36.00 0.38 -0.29 16 8 C -0.25 -2.83 6.24 -102.89 -0.64 -3.47 16 9 C 0.60 7.57 7.60 -12.53 -0.10 7.47 16 10 O -0.53 -8.58 17.11 5.27 0.09 -8.49 16 11 N -0.71 -7.85 5.55 -61.39 -0.34 -8.19 16 12 C 0.12 1.52 5.67 -4.04 -0.02 1.50 16 13 C -0.14 -1.97 5.44 -26.73 -0.15 -2.12 16 14 C 0.16 3.00 6.26 -4.04 -0.03 2.98 16 15 N -0.73 -18.27 5.60 -59.91 -0.34 -18.61 16 16 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 17 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 18 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 19 N -0.93 -27.97 13.06 55.49 0.72 -27.24 16 20 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 24 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.10 0.74 8.11 -51.93 -0.42 0.31 16 29 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.40 3.65 8.46 -40.82 -0.35 3.31 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.38 9.94 7.67 -40.82 -0.31 9.62 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 LS Contribution 349.36 15.07 5.26 5.26 Total: -1.00 -33.48 349.36 -6.57 -40.05 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -6.12 Total: 4.92 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -1.45 Total: -2.36 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: 0.47 Total: -57.85 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: 0.30 Total: -7.24 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.48 -6.57 -40.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175776270.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.645 kcal (2) G-P(sol) polarization free energy of solvation -33.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds