Wall clock time and date at job start Tue Mar 31 2020 05:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35991 * 117.00163 * 2 1 4 4 C 1.38543 * 120.04295 * 0.02562 * 3 2 1 5 5 C 1.38665 * 119.94850 * 179.97438 * 4 3 2 6 6 O 1.35979 * 119.97780 * 179.97438 * 5 4 3 7 7 C 1.38690 * 120.03639 * 359.97438 * 5 4 3 8 8 C 1.50703 * 119.95910 * 179.97438 * 7 5 4 9 9 N 1.46895 * 109.47021 * 285.00365 * 8 7 5 10 10 C 1.46894 * 111.00181 * 293.94578 * 9 8 7 11 11 C 1.46903 * 110.99838 * 169.99657 * 9 8 7 12 12 C 1.50692 * 109.47209 * 190.00103 * 11 9 8 13 13 H 1.08002 * 120.00164 * 0.02562 * 12 11 9 14 14 C 1.37883 * 120.00009 * 180.02562 * 12 11 9 15 15 N 1.31514 * 120.00174 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99843 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47315 * 59.99905 * 16 14 12 18 18 H 1.48503 * 109.46929 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47132 * 299.99662 * 16 14 12 20 20 C 1.38239 * 120.08976 * 359.97438 * 7 5 4 21 21 C 1.38530 * 120.05094 * 0.02562 * 20 7 5 22 22 O 1.36077 * 120.01801 * 179.97438 * 21 20 7 23 23 C 1.42900 * 116.99770 * 359.97438 * 22 21 20 24 24 H 1.08999 * 109.46891 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47064 * 299.99773 * 1 2 3 26 26 H 1.08990 * 109.47154 * 59.99639 * 1 2 3 27 27 H 1.08002 * 120.02353 * 0.24593 * 4 3 2 28 28 H 0.96703 * 113.99814 * 90.00677 * 6 5 4 29 29 H 1.09002 * 109.46292 * 45.00477 * 8 7 5 30 30 H 1.08999 * 109.47067 * 164.99889 * 8 7 5 31 31 H 1.09004 * 109.46707 * 60.00733 * 10 9 8 32 32 H 1.09004 * 109.47273 * 180.02562 * 10 9 8 33 33 H 1.08996 * 109.47063 * 300.00467 * 10 9 8 34 34 H 1.09008 * 109.47194 * 310.00114 * 11 9 8 35 35 H 1.08996 * 109.47105 * 69.99860 * 11 9 8 36 36 H 0.96998 * 120.00273 * 180.02562 * 15 14 12 37 37 H 1.08000 * 119.97475 * 179.97438 * 20 7 5 38 38 H 1.08997 * 109.47276 * 300.00518 * 23 22 21 39 39 H 1.08998 * 109.46877 * 60.00330 * 23 22 21 40 40 H 1.09002 * 109.46980 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2928 2.3742 0.0005 5 6 1.9243 3.6086 0.0011 6 8 1.1852 4.7500 0.0011 7 6 3.3094 3.6798 0.0016 8 6 3.9940 5.0223 0.0016 9 7 3.8976 5.6211 -1.3363 10 6 4.6605 4.8400 -2.3189 11 6 4.3402 7.0218 -1.3193 12 6 4.0005 7.6719 -2.6356 13 1 3.5051 7.1018 -3.4076 14 6 4.3223 8.9947 -2.8546 15 7 4.9252 9.6891 -1.9144 16 14 3.9020 9.8004 -4.4867 17 1 2.4335 9.7482 -4.7008 18 1 4.3493 11.2163 -4.4694 19 1 4.5887 9.0772 -5.5871 20 6 4.0629 2.5208 0.0021 21 6 3.4358 1.2856 0.0016 22 8 4.1782 0.1452 0.0016 23 6 5.5992 0.2962 0.0016 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 0.2142 2.3189 0.0050 28 1 0.9712 5.0800 0.8845 29 1 3.5114 5.6761 0.7281 30 1 5.0433 4.8951 0.2680 31 1 4.2660 3.8247 -2.3612 32 1 4.5724 5.3055 -3.3006 33 1 5.7094 4.8103 -2.0240 34 1 3.8362 7.5523 -0.5113 35 1 5.4181 7.0604 -1.1624 36 1 5.1513 10.6198 -2.0683 37 1 5.1414 2.5784 0.0021 38 1 5.9062 0.8456 -0.8883 39 1 5.9061 0.8455 0.8916 40 1 6.0690 -0.6874 0.0012 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236749489.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:38 Heat of formation + Delta-G solvation = -78.796013 kcal Electronic energy + Delta-G solvation = -22343.543401 eV Core-core repulsion = 18932.052156 eV Total energy + Delta-G solvation = -3411.491245 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.65994 -38.45689 -38.40108 -36.39077 -35.10013 -32.57856 -30.79091 -29.49529 -27.84218 -27.29407 -26.98434 -25.79717 -23.66619 -22.14808 -21.41823 -20.13156 -18.70810 -17.66680 -17.01728 -16.50128 -16.22873 -16.03630 -15.28937 -14.95524 -14.59417 -14.53916 -14.35744 -14.24329 -13.85435 -13.46475 -13.02556 -12.55023 -12.40857 -12.07480 -11.87164 -11.62957 -11.46444 -11.25260 -11.20825 -11.11908 -10.83773 -10.63865 -10.48695 -10.39610 -10.24778 -9.79304 -9.19229 -8.61053 -8.39129 -7.58946 -7.14782 -5.98795 -3.99251 1.28734 1.44543 3.21209 3.26513 3.36835 3.40117 3.44093 3.64485 4.42982 4.47234 4.76806 4.91561 4.98697 5.05954 5.10217 5.13021 5.19506 5.30048 5.35198 5.37786 5.42618 5.44966 5.64227 5.88823 5.95676 6.16692 6.24056 6.26784 6.36627 6.60024 6.72345 6.81262 7.00634 7.32394 7.36951 7.52542 7.84732 7.99631 8.13201 8.25755 8.60227 9.08263 9.64467 11.12149 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.023960 B = 0.004036 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.317193 B = 6936.610395 C = 7485.121971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.308 6.308 3 C 0.105 3.895 4 C -0.203 4.203 5 C 0.136 3.864 6 O -0.474 6.474 7 C -0.087 4.087 8 C 0.102 3.898 9 N -0.525 5.525 10 C 0.038 3.962 11 C 0.194 3.806 12 C -0.503 4.503 13 H 0.063 0.937 14 C 0.055 3.945 15 N -0.901 5.901 16 Si 0.898 3.102 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.278 1.278 20 C -0.152 4.152 21 C 0.085 3.915 22 O -0.309 6.309 23 C 0.027 3.973 24 H 0.097 0.903 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.138 0.862 28 H 0.382 0.618 29 H 0.077 0.923 30 H 0.028 0.972 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.008 0.992 34 H 0.030 0.970 35 H -0.011 1.011 36 H 0.261 0.739 37 H 0.135 0.865 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.364 -18.356 7.421 20.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.222 6.222 3 C 0.060 3.940 4 C -0.223 4.223 5 C 0.090 3.910 6 O -0.282 6.282 7 C -0.088 4.088 8 C -0.027 4.027 9 N -0.249 5.249 10 C -0.110 4.110 11 C 0.070 3.930 12 C -0.542 4.542 13 H 0.081 0.919 14 C -0.146 4.146 15 N -0.541 5.541 16 Si 0.726 3.274 17 H -0.201 1.201 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.172 4.172 21 C 0.040 3.960 22 O -0.223 6.223 23 C -0.069 4.069 24 H 0.116 0.884 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.156 0.844 28 H 0.237 0.763 29 H 0.095 0.905 30 H 0.046 0.954 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.026 0.974 34 H 0.048 0.952 35 H 0.007 0.993 36 H 0.071 0.929 37 H 0.153 0.847 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.725 -18.597 6.700 20.324 hybrid contribution 0.613 0.964 -0.144 1.151 sum -4.112 -17.634 6.556 19.257 Atomic orbital electron populations 1.23037 0.78820 1.03655 1.01331 1.86149 1.20824 1.25916 1.89282 1.17926 0.88868 0.84733 1.02508 1.21269 1.00331 0.91131 1.09529 1.17822 0.88704 0.85166 0.99269 1.85014 1.71972 1.39050 1.32212 1.20098 0.92989 0.95460 1.00280 1.20818 0.96614 0.91145 0.94073 1.62106 1.55780 1.04330 1.02668 1.22219 0.93878 0.96854 0.98096 1.19728 0.93447 0.81705 0.98163 1.21127 1.37644 0.95551 0.99860 0.91922 1.24975 0.95376 0.97246 0.97014 1.69947 1.41754 1.09207 1.33202 0.86563 0.78903 0.78090 0.83868 1.20147 1.21403 1.20331 1.20880 1.00196 0.90218 1.05884 1.18121 0.88096 0.85908 1.03872 1.86147 1.18486 1.28236 1.89470 1.23039 0.78887 1.03548 1.01398 0.88432 0.92837 0.92642 0.84404 0.76302 0.90488 0.95406 0.93759 0.90786 0.97398 0.95203 0.99323 0.92947 0.84699 0.92639 0.92807 0.88443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.14 10.28 -34.30 -0.35 -4.49 16 3 C 0.11 1.52 6.70 -39.14 -0.26 1.26 16 4 C -0.20 -2.81 8.97 -39.31 -0.35 -3.17 16 5 C 0.14 2.13 6.67 -39.26 -0.26 1.87 16 6 O -0.47 -7.47 12.82 -19.68 -0.25 -7.72 16 7 C -0.09 -1.41 4.43 -104.45 -0.46 -1.87 16 8 C 0.10 1.86 4.70 -4.98 -0.02 1.84 16 9 N -0.52 -11.71 4.74 -245.83 -1.17 -12.88 16 10 C 0.04 0.79 9.15 60.06 0.55 1.34 16 11 C 0.19 5.15 4.72 -4.98 -0.02 5.12 16 12 C -0.50 -14.44 8.46 -34.44 -0.29 -14.73 16 13 H 0.06 1.80 7.12 -52.49 -0.37 1.43 16 14 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 16 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 C -0.15 -2.22 8.11 -39.47 -0.32 -2.54 16 21 C 0.09 1.25 6.70 -39.14 -0.26 0.99 16 22 O -0.31 -4.27 10.28 -34.57 -0.36 -4.63 16 23 C 0.03 0.26 9.81 101.05 0.99 1.25 16 24 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 26 H 0.05 0.47 7.67 -51.93 -0.40 0.07 16 27 H 0.14 1.59 6.30 -52.49 -0.33 1.26 16 28 H 0.38 4.08 9.06 45.56 0.41 4.49 16 29 H 0.08 1.38 7.79 -51.93 -0.40 0.98 16 30 H 0.03 0.49 7.93 -51.93 -0.41 0.08 16 31 H 0.04 0.83 6.88 -51.93 -0.36 0.48 16 32 H 0.07 1.64 6.76 -51.93 -0.35 1.29 16 33 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 34 H 0.03 0.84 7.93 -51.92 -0.41 0.42 16 35 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.14 1.74 6.23 -52.49 -0.33 1.41 16 38 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 39 H 0.05 0.46 7.66 -51.93 -0.40 0.07 16 40 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 333.48 15.07 5.03 5.03 Total: -1.00 -34.21 333.48 -6.18 -40.39 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -4.97 Total: -0.49 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: 0.18 Total: -5.92 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: -0.43 Total: -39.15 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.96 Total: -16.85 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.21 -6.18 -40.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236749489.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.409 kcal (2) G-P(sol) polarization free energy of solvation -34.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds