Wall clock time and date at job start Tue Mar 31 2020 05:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00443 * 2 1 4 4 H 1.48493 * 109.47209 * 270.00113 * 3 2 1 5 5 H 1.48507 * 109.47158 * 29.99889 * 3 2 1 6 6 H 1.48503 * 109.47114 * 149.99778 * 3 2 1 7 7 C 1.37875 * 119.99450 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00524 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00036 * 180.02562 * 7 2 1 10 10 C 1.53039 * 109.46029 * 180.02562 * 9 7 2 11 11 C 1.53193 * 109.31121 * 181.38480 * 10 9 7 12 12 N 1.46928 * 108.77510 * 305.36525 * 11 10 9 13 13 C 1.34772 * 120.62909 * 233.58442 * 12 11 10 14 14 O 1.21286 * 120.00105 * 355.49869 * 13 12 11 15 15 C 1.50697 * 120.00125 * 175.49865 * 13 12 11 16 16 N 1.46498 * 115.54900 * 45.57294 * 15 13 12 17 17 C 1.34777 * 120.00164 * 66.31248 * 16 15 13 18 18 N 1.34770 * 120.00454 * 173.79902 * 17 16 15 19 19 O 1.21595 * 119.99589 * 353.80030 * 17 16 15 20 20 C 1.53008 * 117.50095 * 191.24518 * 15 13 12 21 21 C 1.53007 * 117.50032 * 259.90406 * 15 13 12 22 22 C 1.46926 * 118.73905 * 53.86200 * 12 11 10 23 23 C 1.53046 * 109.45698 * 300.07126 * 9 7 2 24 24 H 0.97003 * 119.99750 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.44600 * 60.03429 * 9 7 2 26 26 H 1.08996 * 109.49714 * 61.43043 * 10 9 7 27 27 H 1.08999 * 109.49389 * 301.33488 * 10 9 7 28 28 H 1.08998 * 109.58781 * 185.57318 * 11 10 9 29 29 H 1.09003 * 109.58414 * 65.14902 * 11 10 9 30 30 H 0.96997 * 120.00024 * 246.30901 * 16 15 13 31 31 H 0.96998 * 120.00701 * 179.97438 * 18 17 16 32 32 H 0.97006 * 119.99819 * 359.73082 * 18 17 16 33 33 H 1.09002 * 117.49746 * 215.00054 * 20 15 13 34 34 H 1.08999 * 117.49423 * 0.02562 * 20 15 13 35 35 H 1.08998 * 117.49293 * 359.97438 * 21 15 13 36 36 H 1.08993 * 117.49583 * 144.96945 * 21 15 13 37 37 H 1.08998 * 109.59080 * 65.92567 * 22 12 11 38 38 H 1.08998 * 109.58587 * 186.35500 * 22 12 11 39 39 H 1.09003 * 109.49678 * 298.56271 * 23 9 7 40 40 H 1.09001 * 109.49725 * 58.66207 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1943 0.0011 10 6 4.0212 -2.6373 0.0010 11 6 5.5527 -2.6336 0.0365 12 7 6.0496 -1.8179 -1.0800 13 6 6.9442 -2.3215 -1.9533 14 8 7.4082 -3.4279 -1.7759 15 6 7.3678 -1.5098 -3.1502 16 7 7.6904 -0.1066 -2.8799 17 6 8.7610 0.2051 -2.1229 18 7 9.1313 1.4927 -1.9769 19 8 9.3929 -0.6755 -1.5718 20 6 8.1732 -2.2229 -4.2383 21 6 6.7138 -1.8382 -4.4939 22 6 5.5576 -0.4409 -1.2227 23 6 4.0218 -0.4715 -1.2477 24 1 -0.4850 0.8401 0.0004 25 1 3.8740 -0.6807 0.8915 26 1 3.6794 -3.1437 -0.9016 27 1 3.6381 -3.1584 0.8784 28 1 5.9230 -3.6539 -0.0631 29 1 5.8952 -2.2088 0.9801 30 1 7.1334 0.5983 -3.2458 31 1 9.9016 1.7170 -1.4317 32 1 8.6295 2.1949 -2.4198 33 1 8.9430 -1.6480 -4.7530 34 1 8.3962 -3.2793 -4.0885 35 1 5.9774 -2.6416 -4.5121 36 1 6.5232 -1.0102 -5.1765 37 1 5.9005 0.1590 -0.3797 38 1 5.9310 -0.0141 -2.1535 39 1 3.6801 -0.9988 -2.1384 40 1 3.6392 0.5491 -1.2592 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319989974.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:32 Heat of formation + Delta-G solvation = -22.168056 kcal Electronic energy + Delta-G solvation = -23475.017793 eV Core-core repulsion = 20098.274872 eV Total energy + Delta-G solvation = -3376.742921 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.82823 -39.22057 -37.50665 -36.41970 -34.00689 -33.55752 -32.33313 -31.43645 -30.53890 -26.75123 -24.44113 -22.92269 -22.59699 -22.46381 -21.33393 -19.82502 -18.71749 -18.50988 -17.61274 -16.78503 -16.60042 -15.96457 -15.32637 -14.96264 -14.84026 -14.48119 -14.26465 -14.10156 -13.45699 -13.29293 -13.00906 -12.63472 -12.50595 -12.05630 -11.93914 -11.70954 -11.22432 -11.09055 -10.88303 -10.69912 -10.35805 -10.23342 -10.15492 -9.94975 -9.85367 -9.78526 -9.38199 -9.17633 -8.80554 -8.59454 -8.14226 -6.13197 -4.12148 2.40638 2.77998 3.02124 3.14072 3.22916 3.27574 3.32311 3.76140 4.18888 4.32627 4.50764 4.65306 4.71142 5.13825 5.21131 5.39466 5.41506 5.61038 5.65349 5.73964 5.83320 5.86156 5.95658 6.00410 6.18831 6.22941 6.31007 6.41424 6.61288 6.64004 6.70278 6.75292 6.91316 7.16595 7.45650 7.68538 7.71162 7.77835 8.43460 8.46900 8.48572 8.91612 9.48746 11.00278 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020163 B = 0.005988 C = 0.005352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.350148 B = 4674.753543 C = 5230.012431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.887 3.113 4 H -0.279 1.279 5 H -0.297 1.297 6 H -0.266 1.266 7 C -0.511 4.511 8 H 0.074 0.926 9 C 0.014 3.986 10 C -0.112 4.112 11 C 0.109 3.891 12 N -0.591 5.591 13 C 0.554 3.446 14 O -0.540 6.540 15 C 0.089 3.911 16 N -0.710 5.710 17 C 0.704 3.296 18 N -0.867 5.867 19 O -0.574 6.574 20 C -0.140 4.140 21 C -0.150 4.150 22 C 0.099 3.901 23 C -0.134 4.134 24 H 0.263 0.737 25 H 0.027 0.973 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.060 0.940 30 H 0.402 0.598 31 H 0.415 0.585 32 H 0.396 0.604 33 H 0.103 0.897 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.057 0.943 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.130 4.498 -9.020 18.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.225 1.225 6 H -0.191 1.191 7 C -0.549 4.549 8 H 0.092 0.908 9 C -0.005 4.005 10 C -0.150 4.150 11 C -0.013 4.013 12 N -0.322 5.322 13 C 0.340 3.660 14 O -0.416 6.416 15 C -0.003 4.003 16 N -0.370 5.370 17 C 0.403 3.597 18 N -0.435 5.435 19 O -0.449 6.449 20 C -0.179 4.179 21 C -0.188 4.188 22 C -0.024 4.024 23 C -0.172 4.172 24 H 0.073 0.927 25 H 0.045 0.955 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.102 0.898 29 H 0.079 0.921 30 H 0.239 0.761 31 H 0.248 0.752 32 H 0.224 0.776 33 H 0.121 0.879 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.128 0.872 37 H 0.076 0.924 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 15.651 3.138 -8.493 18.081 hybrid contribution 0.022 2.125 -0.112 2.128 sum 15.673 5.264 -8.605 18.638 Atomic orbital electron populations 1.69902 1.06276 1.26892 1.50810 1.25046 0.94694 0.99014 0.94622 0.86852 0.80018 0.83747 0.77656 1.20632 1.22498 1.19096 1.21056 0.88715 0.94496 1.50663 0.90806 1.19133 0.96774 0.91777 0.92809 1.21826 0.91732 0.99499 1.01957 1.21785 0.95828 0.95728 0.87924 1.47923 1.42027 1.14448 1.27849 1.19303 0.78349 0.85865 0.82510 1.90654 1.55261 1.21048 1.74682 1.20322 1.07600 0.82088 0.90273 1.44632 1.29626 1.06205 1.56512 1.15963 0.80721 0.83436 0.79608 1.42955 1.36643 1.06232 1.57691 1.91046 1.55962 1.46836 1.51071 1.23317 0.93946 1.02524 0.98121 1.23418 0.97373 1.04061 0.93922 1.22254 0.96536 0.82095 1.01530 1.22469 0.91599 1.00891 1.02279 0.92673 0.95508 0.92259 0.91287 0.89847 0.92141 0.76066 0.75237 0.77593 0.87883 0.86724 0.86879 0.87201 0.92431 0.90146 0.91556 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.82 13.96 55.43 0.77 -26.04 16 2 C 0.07 1.87 5.45 -17.82 -0.10 1.78 16 3 Si 0.89 20.68 24.38 -169.99 -4.14 16.53 16 4 H -0.28 -6.15 6.86 56.52 0.39 -5.76 16 5 H -0.30 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.27 -5.91 6.53 56.52 0.37 -5.54 16 7 C -0.51 -13.80 9.14 -34.44 -0.31 -14.11 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C 0.01 0.31 1.66 -91.73 -0.15 0.16 16 10 C -0.11 -2.21 5.30 -26.61 -0.14 -2.35 16 11 C 0.11 1.99 6.42 -3.71 -0.02 1.97 16 12 N -0.59 -10.54 2.97 -172.50 -0.51 -11.05 16 13 C 0.55 9.94 6.62 -10.99 -0.07 9.87 16 14 O -0.54 -11.29 15.75 5.55 0.09 -11.20 16 15 C 0.09 1.20 1.41 -132.97 -0.19 1.01 16 16 N -0.71 -7.86 3.34 -53.50 -0.18 -8.04 16 17 C 0.70 9.08 8.73 -86.92 -0.76 8.32 16 18 N -0.87 -6.86 8.88 27.63 0.25 -6.62 16 19 O -0.57 -10.50 16.68 5.28 0.09 -10.41 16 20 C -0.14 -1.64 9.97 -26.69 -0.27 -1.91 16 21 C -0.15 -1.53 10.16 -26.69 -0.27 -1.80 16 22 C 0.10 1.64 5.97 -3.48 -0.02 1.61 16 23 C -0.13 -2.64 4.86 -26.38 -0.13 -2.77 16 24 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 25 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.08 1.53 7.03 -51.93 -0.37 1.16 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.40 3.12 7.81 -40.82 -0.32 2.80 16 31 H 0.42 2.94 8.93 -40.82 -0.36 2.57 16 32 H 0.40 1.82 8.85 -40.82 -0.36 1.46 16 33 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.11 1.49 7.72 -51.93 -0.40 1.09 16 35 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.08 1.07 4.00 -51.93 -0.21 0.87 16 39 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 40 H 0.06 1.14 3.24 -51.93 -0.17 0.97 16 LS Contribution 318.35 15.07 4.80 4.80 Total: -1.00 -35.92 318.35 -6.82 -42.74 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -5.54 Total: 7.51 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -2.43 Total: 1.77 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: 0.33 Total: -51.75 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: 0.18 Total: -21.61 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.14 Total: 16.53 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -35.92 -6.82 -42.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319989974.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.570 kcal (2) G-P(sol) polarization free energy of solvation -35.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds