Wall clock time and date at job start Tue Mar 31 2020 05:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99886 * 2 1 4 4 H 1.48498 * 109.46953 * 269.99999 * 3 2 1 5 5 H 1.48500 * 109.47137 * 29.99971 * 3 2 1 6 6 H 1.48505 * 109.47057 * 150.00270 * 3 2 1 7 7 C 1.37875 * 120.00043 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00024 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00000 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.46936 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47083 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.46771 * 304.99647 * 11 10 9 13 13 N 1.46896 * 109.47231 * 64.99469 * 11 10 9 14 14 C 1.50696 * 109.47255 * 185.00166 * 11 10 9 15 15 N 1.31122 * 126.55712 * 104.99684 * 14 11 10 16 16 C 1.34490 * 105.62060 * 179.97438 * 15 14 11 17 17 C 1.50700 * 126.29229 * 179.97438 * 16 15 14 18 18 H 1.08998 * 109.57086 * 359.83973 * 17 16 15 19 19 C 1.53175 * 109.52661 * 120.00141 * 17 16 15 20 20 C 1.53176 * 109.03666 * 176.88706 * 19 17 16 21 21 C 1.53090 * 109.16134 * 303.01424 * 20 19 17 22 22 O 1.42900 * 109.41229 * 57.61417 * 21 20 19 23 23 C 1.42910 * 114.09727 * 298.83586 * 22 21 20 24 24 N 1.29951 * 107.42157 * 0.24324 * 16 15 14 25 25 O 1.21297 * 110.24869 * 359.57757 * 24 16 15 26 26 H 0.96993 * 119.99932 * 359.97438 * 1 2 3 27 27 H 1.08989 * 109.47184 * 60.00143 * 9 7 2 28 28 H 1.08996 * 109.47022 * 299.99674 * 9 7 2 29 29 H 1.09003 * 109.47248 * 60.00019 * 10 9 7 30 30 H 1.08996 * 109.46838 * 299.99590 * 10 9 7 31 31 H 1.00899 * 110.99943 * 60.00347 * 13 11 10 32 32 H 1.00897 * 111.00331 * 183.95455 * 13 11 10 33 33 H 1.08997 * 109.54332 * 57.01158 * 19 17 16 34 34 H 1.09004 * 109.53853 * 296.75387 * 19 17 16 35 35 H 1.09001 * 109.52023 * 62.92336 * 20 19 17 36 36 H 1.08998 * 109.52257 * 183.04488 * 20 19 17 37 37 H 1.09003 * 109.47673 * 177.59165 * 21 20 19 38 38 H 1.08993 * 109.48332 * 297.62514 * 21 20 19 39 39 H 1.08998 * 109.48144 * 181.14387 * 23 22 21 40 40 H 1.09001 * 109.47828 * 301.16909 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6366 0.0010 11 6 5.5516 -2.6366 0.0009 12 1 5.9149 -2.0471 -0.8409 13 7 6.0413 -2.0513 1.2561 14 6 6.0539 -4.0519 -0.1231 15 7 6.5712 -4.6062 -1.1929 16 6 6.8732 -5.8676 -0.8373 17 6 7.4943 -6.9189 -1.7204 18 1 7.6668 -6.5056 -2.7141 19 6 8.8266 -7.3731 -1.1164 20 6 9.4100 -8.4955 -1.9801 21 6 8.3948 -9.6377 -2.0727 22 8 7.1689 -9.1408 -2.6135 23 6 6.5530 -8.1219 -1.8230 24 7 6.5257 -6.0150 0.4062 25 8 6.0578 -4.9820 0.8367 26 1 -0.4850 0.8400 0.0004 27 1 3.8746 -0.6801 0.8910 28 1 3.8752 -0.6805 -0.8888 29 1 3.6586 -3.1502 -0.8893 30 1 3.6579 -3.1505 0.8907 31 1 5.7179 -2.5802 2.0521 32 1 7.0478 -1.9807 1.2537 33 1 8.6614 -7.7406 -0.1036 34 1 9.5210 -6.5332 -1.0921 35 1 9.6213 -8.1140 -2.9791 36 1 10.3315 -8.8618 -1.5277 37 1 8.7871 -10.4210 -2.7213 38 1 8.2146 -10.0454 -1.0781 39 1 5.6185 -7.8134 -2.2917 40 1 6.3485 -8.5099 -0.8251 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326649439.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:04 Heat of formation + Delta-G solvation = 2.781220 kcal Electronic energy + Delta-G solvation = -21803.400921 eV Core-core repulsion = 18427.739882 eV Total energy + Delta-G solvation = -3375.661039 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.64161 -39.79074 -36.90175 -36.17323 -34.09261 -33.07732 -32.29161 -30.86660 -30.59197 -26.94287 -25.57487 -25.11570 -24.25550 -23.04527 -21.58334 -20.37333 -19.85053 -18.06463 -17.70267 -16.72134 -16.63107 -16.38228 -16.08833 -15.44558 -15.12230 -15.00735 -14.34883 -14.27131 -13.92163 -13.27791 -13.00991 -12.83337 -12.70430 -12.50352 -12.17148 -11.86268 -11.71436 -11.60268 -11.30347 -11.16971 -11.06766 -10.93033 -10.77723 -10.33955 -10.04412 -9.91766 -9.75854 -9.55592 -9.17417 -8.99955 -8.49363 -6.00959 -3.99291 1.07833 2.11928 2.77756 3.22506 3.35805 3.43281 3.49546 3.63138 3.88671 4.35197 4.37773 4.45426 4.49342 4.49873 4.56666 4.76765 4.96193 4.97496 5.17913 5.22642 5.29552 5.33457 5.34284 5.45918 5.49076 5.54870 5.63295 5.65975 5.80838 5.93716 6.23665 6.36422 6.74518 6.77912 6.97266 7.30042 7.35050 7.51338 7.82457 8.09838 8.55312 9.03291 9.61334 11.12463 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.036171 B = 0.003092 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.917943 B = 9054.700087 C = 9413.959100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.066 3.934 3 Si 0.879 3.121 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.259 1.259 7 C -0.523 4.523 8 H 0.069 0.931 9 C -0.003 4.003 10 C -0.094 4.094 11 C 0.183 3.817 12 H 0.125 0.875 13 N -0.816 5.816 14 C 0.161 3.839 15 N -0.481 5.481 16 C 0.171 3.829 17 C -0.029 4.029 18 H 0.110 0.890 19 C -0.114 4.114 20 C -0.153 4.153 21 C 0.055 3.945 22 O -0.374 6.374 23 C 0.071 3.929 24 N -0.385 5.385 25 O 0.075 5.925 26 H 0.262 0.738 27 H 0.036 0.964 28 H 0.011 0.989 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.351 0.649 32 H 0.341 0.659 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.053 0.947 39 H 0.100 0.900 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.339 -15.453 -1.404 25.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.184 1.184 7 C -0.561 4.561 8 H 0.088 0.912 9 C -0.041 4.041 10 C -0.133 4.133 11 C 0.068 3.932 12 H 0.143 0.857 13 N -0.345 5.345 14 C -0.062 4.062 15 N -0.215 5.215 16 C -0.102 4.102 17 C -0.049 4.049 18 H 0.128 0.872 19 C -0.153 4.153 20 C -0.191 4.191 21 C -0.021 4.021 22 O -0.292 6.292 23 C -0.007 4.007 24 N -0.094 5.094 25 O 0.018 5.982 26 H 0.072 0.928 27 H 0.054 0.946 28 H 0.030 0.970 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.165 0.835 32 H 0.154 0.846 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.116 0.884 38 H 0.071 0.929 39 H 0.118 0.882 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 19.928 -15.512 -1.747 25.314 hybrid contribution 0.882 0.245 0.386 0.994 sum 20.810 -15.267 -1.361 25.845 Atomic orbital electron populations 1.69921 1.06386 1.26888 1.51256 1.25013 0.94707 0.99240 0.94514 0.86772 0.80655 0.83418 0.78483 1.20445 1.21604 1.18363 1.21138 0.89573 0.94421 1.50932 0.91246 1.19483 0.96577 0.90612 0.97414 1.21655 0.87273 1.02199 1.02132 1.20861 0.98795 0.78208 0.95380 0.85737 1.58851 1.15903 1.56448 1.03286 1.31106 0.94431 0.98239 0.82408 1.71928 1.17248 1.05719 1.26567 1.25540 1.00803 0.93205 0.90649 1.20194 0.95395 0.91499 0.97837 0.87169 1.21646 0.95007 0.99010 0.99609 1.22195 0.99244 0.96416 1.01264 1.22660 0.84410 0.95666 0.99409 1.87992 1.37377 1.54389 1.49477 1.22578 0.95145 0.86316 0.96630 1.74547 1.16005 1.05068 1.13748 1.85263 1.58622 1.15404 1.38927 0.92784 0.94575 0.97039 0.91670 0.91750 0.83455 0.84597 0.90971 0.90953 0.90519 0.90229 0.88448 0.92903 0.88168 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.91 13.96 55.43 0.77 -27.14 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 7 C -0.52 -14.63 9.66 -34.44 -0.33 -14.96 16 8 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 9 C 0.00 -0.08 3.93 -27.88 -0.11 -0.19 16 10 C -0.09 -1.72 4.78 -26.73 -0.13 -1.85 16 11 C 0.18 2.65 3.29 -68.87 -0.23 2.43 16 12 H 0.12 1.78 8.14 -51.93 -0.42 1.36 16 13 N -0.82 -10.41 8.68 -5.66 -0.05 -10.46 16 14 C 0.16 2.34 7.31 -13.06 -0.10 2.24 16 15 N -0.48 -7.26 11.55 -9.87 -0.11 -7.37 16 16 C 0.17 2.34 6.73 -156.37 -1.05 1.29 16 17 C -0.03 -0.31 2.86 -91.63 -0.26 -0.57 16 18 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 19 C -0.11 -1.01 5.29 -26.55 -0.14 -1.15 16 20 C -0.15 -1.04 6.14 -26.59 -0.16 -1.21 16 21 C 0.06 0.41 6.84 37.20 0.25 0.66 16 22 O -0.37 -3.91 10.77 -35.23 -0.38 -4.28 16 23 C 0.07 0.75 6.11 37.21 0.23 0.98 16 24 N -0.39 -5.55 12.16 30.90 0.38 -5.18 16 25 O 0.08 1.09 11.29 18.10 0.20 1.30 16 26 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 27 H 0.04 0.82 6.81 -51.94 -0.35 0.47 16 28 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.35 4.16 8.97 -39.29 -0.35 3.81 16 32 H 0.34 3.49 9.06 -39.29 -0.36 3.14 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 331.45 15.07 4.99 4.99 Total: -1.00 -31.99 331.45 -7.10 -39.10 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -6.11 Total: 2.69 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -2.13 Total: -10.50 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: 0.99 Total: -50.15 kcal Atomic # 8 Polarization: -2.81 SS G_CDS: -0.17 Total: -2.99 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.99 -7.10 -39.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326649439.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.877 kcal (2) G-P(sol) polarization free energy of solvation -31.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds