Wall clock time and date at job start Tue Mar 31 2020 05:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46794 * 2 1 4 4 C 1.42900 * 113.99796 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47014 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.46712 * 305.00249 * 5 4 3 7 7 O 1.42899 * 109.47456 * 64.99734 * 5 4 3 8 8 C 1.52995 * 109.47099 * 185.00093 * 5 4 3 9 9 N 1.46497 * 109.47155 * 179.97438 * 8 5 4 10 10 C 1.39783 * 120.00170 * 179.97438 * 9 8 5 11 11 C 1.38954 * 120.00575 * 180.02562 * 10 9 8 12 12 C 1.38007 * 119.99166 * 179.97438 * 11 10 9 13 13 C 1.38902 * 120.01005 * 0.02562 * 12 11 10 14 14 O 1.35791 * 119.99602 * 179.97438 * 13 12 11 15 15 C 1.34814 * 117.00275 * 5.54237 * 14 13 12 16 16 H 1.08001 * 119.99433 * 354.94541 * 15 14 13 17 17 C 1.38623 * 120.00152 * 174.94460 * 15 14 13 18 18 N 1.31580 * 119.99790 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99810 * 359.97438 * 17 15 14 20 20 H 1.48494 * 109.47073 * 90.00490 * 19 17 15 21 21 H 1.48497 * 109.46725 * 210.00116 * 19 17 15 22 22 H 1.48495 * 109.47445 * 330.00022 * 19 17 15 23 23 C 1.38899 * 120.00547 * 0.23803 * 13 12 11 24 24 C 1.38007 * 120.00976 * 359.48072 * 23 13 12 25 25 H 1.08995 * 109.47401 * 299.99851 * 1 2 3 26 26 H 1.08997 * 109.46700 * 60.00609 * 1 2 3 27 27 H 1.09004 * 109.46497 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47653 * 239.99847 * 2 1 3 29 29 H 1.09002 * 109.46999 * 119.99779 * 2 1 3 30 30 H 1.08994 * 109.47159 * 59.99737 * 4 3 2 31 31 H 1.09005 * 109.47174 * 299.99455 * 4 3 2 32 32 H 0.96701 * 113.99995 * 59.99494 * 7 5 4 33 33 H 1.08997 * 109.47316 * 59.99518 * 8 5 4 34 34 H 1.09000 * 109.47466 * 299.99694 * 8 5 4 35 35 H 0.97006 * 119.99900 * 0.02562 * 9 8 5 36 36 H 1.08000 * 120.00423 * 359.95844 * 11 10 9 37 37 H 1.08006 * 119.99529 * 180.02562 * 12 11 10 38 38 H 0.96996 * 119.99760 * 179.97438 * 18 17 15 39 39 H 1.08002 * 119.99383 * 179.74321 * 23 13 12 40 40 H 1.08001 * 120.00357 * 180.23301 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8253 2.9385 0.0012 6 1 3.3497 3.4417 -0.8407 7 8 3.3974 3.5453 1.2222 8 6 5.3452 3.0608 -0.1239 9 7 5.7228 4.4763 -0.1240 10 6 7.0683 4.8407 -0.2285 11 6 7.4266 6.1833 -0.2280 12 6 8.7551 6.5427 -0.3306 13 6 9.7339 5.5627 -0.4349 14 8 11.0409 5.9168 -0.5364 15 6 11.3312 7.2276 -0.4145 16 1 10.5343 7.9511 -0.3260 17 6 12.6525 7.6467 -0.4028 18 7 12.9359 8.9261 -0.2833 19 14 14.0308 6.3951 -0.5552 20 1 14.3653 6.1993 -1.9886 21 1 15.2293 6.8879 0.1700 22 1 13.5934 5.1032 0.0320 23 6 9.3754 4.2208 -0.4409 24 6 8.0476 3.8606 -0.3325 25 1 -0.3634 0.5138 0.8899 26 1 -0.3632 0.5137 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8339 0.9765 -0.8891 31 1 3.8332 0.9769 0.8909 32 1 3.7819 3.1470 2.0151 33 1 5.6715 2.5980 -1.0553 34 1 5.8208 2.5576 0.7179 35 1 5.0392 5.1607 -0.0508 36 1 6.6656 6.9453 -0.1476 37 1 9.0337 7.5862 -0.3298 38 1 13.8604 9.2193 -0.2747 39 1 10.1363 3.4591 -0.5262 40 1 7.7693 2.8170 -0.3334 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327993813.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:43 Heat of formation + Delta-G solvation = -96.475635 kcal Electronic energy + Delta-G solvation = -20914.779359 eV Core-core repulsion = 17502.521468 eV Total energy + Delta-G solvation = -3412.257891 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.37977 -38.88765 -37.57128 -36.66981 -34.10859 -32.24756 -32.02079 -30.50299 -30.03105 -27.63059 -25.60291 -24.29977 -23.19768 -22.63378 -21.52195 -20.60304 -17.88938 -17.38419 -17.27526 -17.00927 -16.49088 -16.42772 -15.61218 -15.11126 -14.55967 -14.24058 -13.92618 -13.79550 -13.60286 -13.54527 -13.25411 -13.02669 -12.77215 -12.69305 -12.20319 -12.09189 -11.79834 -11.77223 -11.53675 -11.46257 -11.13112 -10.83388 -10.60445 -10.34893 -10.09234 -10.03282 -9.30063 -9.23395 -8.55463 -8.25635 -6.51871 -6.30130 -3.94700 2.11114 2.46008 3.01968 3.28906 3.31266 3.46569 3.81719 4.13081 4.32655 4.51787 4.59481 4.60828 4.66139 4.68186 4.83971 4.94631 5.00573 5.01085 5.10407 5.21687 5.28721 5.41821 5.48737 5.58790 5.64781 5.70296 5.75241 6.12459 6.15695 6.42382 6.74157 6.77614 6.81084 6.99449 7.34581 7.34937 7.47415 7.78084 7.92462 8.10244 8.20980 9.06270 9.72112 10.78373 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.054612 B = 0.002475 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.581778 B =11312.301593 C =11709.389019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.379 6.379 4 C 0.033 3.967 5 C 0.101 3.899 6 H 0.111 0.889 7 O -0.548 6.548 8 C 0.106 3.894 9 N -0.752 5.752 10 C 0.132 3.868 11 C -0.142 4.142 12 C -0.175 4.175 13 C 0.117 3.883 14 O -0.228 6.228 15 C -0.384 4.384 16 H 0.103 0.897 17 C 0.059 3.941 18 N -0.887 5.887 19 Si 0.906 3.094 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.261 1.261 23 C -0.150 4.150 24 C -0.151 4.151 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.375 0.625 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.397 0.603 36 H 0.110 0.890 37 H 0.134 0.866 38 H 0.277 0.723 39 H 0.116 0.884 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.067 -17.215 0.976 26.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.299 6.299 4 C -0.044 4.044 5 C 0.041 3.959 6 H 0.129 0.871 7 O -0.353 6.353 8 C -0.020 4.020 9 N -0.389 5.389 10 C 0.033 3.967 11 C -0.164 4.164 12 C -0.195 4.195 13 C 0.066 3.934 14 O -0.134 6.134 15 C -0.460 4.460 16 H 0.121 0.879 17 C -0.143 4.143 18 N -0.527 5.527 19 Si 0.732 3.268 20 H -0.201 1.201 21 H -0.210 1.210 22 H -0.185 1.185 23 C -0.170 4.170 24 C -0.173 4.173 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.222 0.778 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.232 0.768 36 H 0.128 0.872 37 H 0.152 0.848 38 H 0.087 0.913 39 H 0.134 0.866 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -20.126 -16.847 0.534 26.252 hybrid contribution 0.907 -0.708 0.290 1.187 sum -19.219 -17.556 0.824 26.043 Atomic orbital electron populations 1.21738 0.93610 1.02226 1.03299 1.22493 0.95789 0.83795 1.00037 1.87959 1.20230 1.26268 1.95395 1.23147 0.82383 0.97669 1.01220 1.22101 0.93156 0.91554 0.89086 0.87148 1.86632 1.72168 1.61287 1.15229 1.21646 0.93575 0.85288 1.01484 1.44032 1.04484 1.04789 1.85588 1.17441 0.83553 0.92945 1.02720 1.20305 0.95932 0.93406 1.06722 1.21125 0.91857 1.00447 1.06037 1.18968 0.84519 0.92658 0.97265 1.83569 1.20351 1.28136 1.81374 1.20709 0.94706 0.79458 1.51137 0.87929 1.24432 0.97375 0.96326 0.96137 1.69663 1.20358 1.13613 1.49020 0.86174 0.80244 0.81754 0.78649 1.20085 1.21049 1.18481 1.19996 0.95437 0.93544 1.08013 1.20132 0.91660 0.97187 1.08350 0.91741 0.91799 0.91100 0.93407 0.93426 0.92108 0.92716 0.77791 0.91962 0.92591 0.76805 0.87224 0.84820 0.91313 0.86579 0.87165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 10.28 37.16 0.38 -0.51 16 2 C 0.06 0.38 6.66 37.16 0.25 0.63 16 3 O -0.38 -3.61 10.31 -40.08 -0.41 -4.02 16 4 C 0.03 0.25 5.57 37.16 0.21 0.46 16 5 C 0.10 0.89 3.33 -26.73 -0.09 0.80 16 6 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 7 O -0.55 -5.50 13.05 -40.08 -0.52 -6.02 16 8 C 0.11 1.04 4.57 -4.05 -0.02 1.02 16 9 N -0.75 -9.72 5.63 -58.59 -0.33 -10.05 16 10 C 0.13 2.19 6.66 -83.70 -0.56 1.63 16 11 C -0.14 -2.60 9.89 -39.40 -0.39 -2.99 16 12 C -0.18 -3.82 9.16 -39.42 -0.36 -4.18 16 13 C 0.12 2.74 6.65 -39.09 -0.26 2.48 16 14 O -0.23 -6.13 8.58 -0.03 0.00 -6.13 16 15 C -0.38 -11.03 9.94 30.87 0.31 -10.72 16 16 H 0.10 3.00 5.43 -52.49 -0.28 2.72 16 17 C 0.06 1.69 5.49 -17.52 -0.10 1.60 16 18 N -0.89 -26.16 13.96 55.48 0.77 -25.39 16 19 Si 0.91 22.15 28.62 -169.99 -4.86 17.29 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 22 H -0.26 -6.38 7.11 56.52 0.40 -5.98 16 23 C -0.15 -2.99 9.98 -39.42 -0.39 -3.38 16 24 C -0.15 -2.56 9.30 -39.40 -0.37 -2.92 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.37 2.64 9.05 45.56 0.41 3.06 16 33 H 0.06 0.59 7.95 -51.93 -0.41 0.18 16 34 H 0.06 0.52 7.95 -51.93 -0.41 0.11 16 35 H 0.40 4.92 8.36 -40.82 -0.34 4.58 16 36 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.13 3.07 5.63 -52.48 -0.30 2.78 16 38 H 0.28 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.12 2.15 8.06 -52.49 -0.42 1.72 16 40 H 0.11 1.54 6.73 -52.49 -0.35 1.19 16 LS Contribution 339.62 15.07 5.12 5.12 Total: -1.00 -32.17 339.62 -6.68 -38.85 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -5.05 Total: 6.46 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: -1.39 Total: -16.10 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: 0.44 Total: -35.44 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.94 Total: -16.17 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.86 Total: 17.29 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.17 -6.68 -38.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327993813.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.627 kcal (2) G-P(sol) polarization free energy of solvation -32.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds