Wall clock time and date at job start Tue Mar 31 2020 05:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00003 * 2 1 4 4 H 1.48499 * 109.47336 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47281 * 300.00122 * 3 2 1 6 6 H 1.48503 * 109.46836 * 60.00611 * 3 2 1 7 7 C 1.37877 * 120.00043 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00033 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00204 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.52472 * 60.07913 * 9 7 2 11 11 C 1.53039 * 109.49822 * 299.99824 * 9 7 2 12 12 C 1.53041 * 109.54079 * 178.67915 * 11 9 7 13 13 C 1.53199 * 109.33510 * 61.34919 * 12 11 9 14 14 N 1.46930 * 108.77381 * 305.41467 * 13 12 11 15 15 C 1.34777 * 120.60603 * 233.57697 * 14 13 12 16 16 O 1.21279 * 119.99984 * 174.85318 * 15 14 13 17 17 C 1.50702 * 119.99893 * 354.85899 * 15 14 13 18 18 N 1.46502 * 115.54979 * 298.26367 * 17 15 14 19 19 C 1.34778 * 119.99883 * 304.03427 * 18 17 15 20 20 N 1.34774 * 119.99945 * 175.06486 * 19 18 17 21 21 O 1.21580 * 119.99947 * 355.05997 * 19 18 17 22 22 C 1.53000 * 117.49800 * 152.55358 * 17 15 14 23 23 C 1.53002 * 117.49889 * 83.92951 * 17 15 14 24 24 C 1.46928 * 118.76396 * 53.55264 * 14 13 12 25 25 H 0.97003 * 120.00173 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.45850 * 58.66598 * 11 9 7 27 27 H 1.08997 * 109.46442 * 298.70412 * 11 9 7 28 28 H 1.08996 * 109.50233 * 181.31438 * 12 11 9 29 29 H 1.09003 * 109.50118 * 301.38475 * 12 11 9 30 30 H 1.09004 * 109.58232 * 65.17191 * 13 12 11 31 31 H 1.09004 * 109.58444 * 185.58956 * 13 12 11 32 32 H 0.96996 * 119.99922 * 124.02976 * 18 17 15 33 33 H 0.97005 * 120.00092 * 359.97438 * 20 19 18 34 34 H 0.96993 * 120.00209 * 179.97438 * 20 19 18 35 35 H 1.08997 * 117.49995 * 0.02562 * 22 17 15 36 36 H 1.09001 * 117.49568 * 145.01789 * 22 17 15 37 37 H 1.08997 * 117.49933 * 214.97803 * 23 17 15 38 38 H 1.08996 * 117.50116 * 359.97438 * 23 17 15 39 39 H 1.09004 * 109.58628 * 186.62080 * 24 14 13 40 40 H 1.09007 * 109.69973 * 66.27037 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6248 -2.5582 -0.8907 11 6 0.3715 -2.5812 1.2492 12 6 -0.4189 -3.8915 1.2337 13 6 0.5566 -5.0726 1.2506 14 7 1.4999 -4.9229 0.1340 15 6 1.6769 -5.9217 -0.7534 16 8 2.3865 -5.7532 -1.7224 17 6 0.9929 -7.2477 -0.5417 18 7 1.3660 -7.9630 0.6812 19 6 2.6597 -8.2519 0.9248 20 7 3.0146 -8.8204 2.0941 21 8 3.5066 -7.9997 0.0898 22 6 0.6768 -8.0856 -1.7822 23 6 -0.4522 -7.3825 -1.0259 24 6 2.2460 -3.6639 0.0028 25 1 -0.4850 0.8401 0.0004 26 1 -0.3211 -1.7395 1.2616 27 1 1.0004 -2.5469 2.1388 28 1 -1.0625 -3.9387 2.1121 29 1 -1.0299 -3.9373 0.3321 30 1 1.1046 -5.0804 2.1928 31 1 0.0033 -6.0052 1.1397 32 1 0.6820 -8.2286 1.3155 33 1 2.3389 -9.0214 2.7605 34 1 3.9456 -9.0287 2.2693 35 1 0.9640 -7.6779 -2.7514 36 1 0.7466 -9.1693 -1.6887 37 1 -1.1252 -8.0037 -0.4349 38 1 -0.9084 -6.5120 -1.4972 39 1 2.8075 -3.6676 -0.9314 40 1 2.9333 -3.5550 0.8418 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328440384.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:18 Heat of formation + Delta-G solvation = -38.524389 kcal Electronic energy + Delta-G solvation = -23242.766448 eV Core-core repulsion = 19865.314263 eV Total energy + Delta-G solvation = -3377.452185 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.57689 -39.06906 -37.21300 -36.21176 -33.88023 -33.41476 -32.18402 -31.26428 -30.18877 -25.55438 -24.99600 -23.04859 -22.68169 -21.66050 -21.50504 -19.57792 -18.51874 -18.27377 -17.48833 -16.58722 -16.15570 -15.61671 -15.32390 -14.79932 -14.61570 -14.30737 -13.97229 -13.90270 -13.42684 -13.08441 -12.73041 -12.60217 -12.07361 -11.95067 -11.63515 -11.17548 -11.02558 -10.96233 -10.78077 -10.67692 -10.28703 -10.24238 -9.94343 -9.78395 -9.76786 -9.56026 -9.41068 -8.92650 -8.73374 -8.37532 -7.83154 -6.00872 -4.07409 2.47807 3.04134 3.16700 3.29916 3.37771 3.40962 3.47074 3.85552 4.30288 4.44014 4.64243 4.76036 4.82130 5.27849 5.33105 5.41057 5.47709 5.64812 5.77387 5.83878 6.04089 6.09840 6.33778 6.34264 6.41656 6.49423 6.53067 6.69686 6.78059 6.83796 7.02467 7.18576 7.34701 7.70688 7.81946 7.93565 8.06463 8.08977 8.39748 8.57923 8.72938 8.96563 9.57443 11.04727 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.025862 B = 0.004704 C = 0.004595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.394246 B = 5951.505075 C = 6091.476623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.512 4.512 8 H 0.057 0.943 9 C 0.040 3.960 10 H 0.030 0.970 11 C -0.112 4.112 12 C -0.134 4.134 13 C 0.117 3.883 14 N -0.596 5.596 15 C 0.547 3.453 16 O -0.527 6.527 17 C 0.097 3.903 18 N -0.708 5.708 19 C 0.703 3.297 20 N -0.868 5.868 21 O -0.568 6.568 22 C -0.147 4.147 23 C -0.160 4.160 24 C 0.119 3.881 25 H 0.259 0.741 26 H 0.096 0.904 27 H 0.034 0.966 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.398 0.602 33 H 0.395 0.605 34 H 0.415 0.585 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.112 0.888 39 H 0.078 0.922 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.977 -17.774 6.590 19.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.138 4.138 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.076 0.924 9 C 0.021 3.979 10 H 0.048 0.952 11 C -0.150 4.150 12 C -0.173 4.173 13 C -0.006 4.006 14 N -0.328 5.328 15 C 0.331 3.669 16 O -0.402 6.402 17 C 0.005 3.995 18 N -0.366 5.366 19 C 0.401 3.599 20 N -0.437 5.437 21 O -0.442 6.442 22 C -0.186 4.186 23 C -0.198 4.198 24 C -0.002 4.002 25 H 0.069 0.931 26 H 0.114 0.886 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.233 0.767 33 H 0.222 0.778 34 H 0.247 0.753 35 H 0.130 0.870 36 H 0.121 0.879 37 H 0.125 0.875 38 H 0.130 0.870 39 H 0.097 0.903 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.091 -17.235 5.248 18.279 hybrid contribution 0.075 0.560 1.034 1.179 sum -3.016 -16.675 6.282 18.072 Atomic orbital electron populations 1.69878 1.05883 1.26315 1.50799 1.24926 0.94851 0.99054 0.94960 0.86527 0.80247 0.83675 0.77522 1.19723 1.21016 1.21067 1.21127 0.93067 0.90279 1.50580 0.92440 1.18972 0.92942 0.91171 0.94775 0.95221 1.21625 0.99444 0.95357 0.98573 1.22014 0.97619 0.96758 1.00877 1.21651 0.91132 0.98721 0.89116 1.48147 1.41963 1.15776 1.26910 1.19259 0.81240 0.83499 0.82907 1.90670 1.38246 1.81759 1.29524 1.20303 0.99181 0.92838 0.87182 1.44306 1.06837 1.62176 1.23285 1.15980 0.82874 0.78398 0.82691 1.42944 1.13158 1.69415 1.18147 1.91083 1.49296 1.57949 1.45912 1.23337 0.99671 0.99033 0.96589 1.23441 0.89421 1.04006 1.02915 1.21992 0.94987 0.81737 1.01490 0.93074 0.88609 0.94681 0.92574 0.92339 0.92564 0.91457 0.76659 0.77793 0.75301 0.87032 0.87922 0.87460 0.86950 0.90338 0.92865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.00 11.31 55.43 0.63 -24.37 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.51 -14.08 8.56 -34.44 -0.29 -14.38 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 9 C 0.04 1.01 2.25 -91.66 -0.21 0.81 16 10 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 11 C -0.11 -2.51 4.96 -26.69 -0.13 -2.64 16 12 C -0.13 -2.34 6.08 -26.61 -0.16 -2.51 16 13 C 0.12 1.83 6.08 -3.70 -0.02 1.81 16 14 N -0.60 -11.63 2.97 -172.75 -0.51 -12.14 16 15 C 0.55 10.85 6.09 -10.98 -0.07 10.78 16 16 O -0.53 -12.72 16.02 5.56 0.09 -12.63 16 17 C 0.10 1.38 0.89 -132.97 -0.12 1.26 16 18 N -0.71 -8.01 4.62 -53.50 -0.25 -8.26 16 19 C 0.70 9.64 8.63 -86.92 -0.75 8.89 16 20 N -0.87 -7.25 8.88 27.63 0.25 -7.00 16 21 O -0.57 -11.24 16.47 5.30 0.09 -11.15 16 22 C -0.15 -1.87 9.97 -26.73 -0.27 -2.14 16 23 C -0.16 -1.70 9.55 -26.73 -0.26 -1.96 16 24 C 0.12 2.72 5.66 -3.71 -0.02 2.70 16 25 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 26 H 0.10 2.42 6.04 -51.93 -0.31 2.11 16 27 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.83 5.40 -51.93 -0.28 0.55 16 32 H 0.40 2.82 8.78 -40.82 -0.36 2.47 16 33 H 0.39 1.81 8.85 -40.82 -0.36 1.44 16 34 H 0.41 3.18 8.93 -40.82 -0.36 2.81 16 35 H 0.11 1.60 7.93 -51.93 -0.41 1.18 16 36 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.11 1.29 8.14 -51.93 -0.42 0.86 16 39 H 0.08 1.96 7.00 -51.93 -0.36 1.60 16 40 H 0.05 1.20 8.14 -51.92 -0.42 0.78 16 LS Contribution 327.44 15.07 4.93 4.93 Total: -1.00 -35.98 327.44 -7.99 -43.97 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -5.80 Total: 6.09 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -2.39 Total: 4.27 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: 0.11 Total: -51.77 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: 0.18 Total: -23.79 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.98 -7.99 -43.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328440384.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.447 kcal (2) G-P(sol) polarization free energy of solvation -35.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds