Wall clock time and date at job start Tue Mar 31 2020 06:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 114.00262 * 2 1 4 4 N 1.46497 * 109.47497 * 180.02562 * 3 2 1 5 5 N 1.40084 * 126.03762 * 270.15727 * 4 3 2 6 6 C 1.30832 * 108.20578 * 180.22675 * 5 4 3 7 7 C 1.39868 * 108.20272 * 359.78374 * 6 5 4 8 8 C 1.50702 * 126.04100 * 180.02562 * 7 6 5 9 9 C 1.34950 * 126.03808 * 89.99881 * 4 3 2 10 10 C 1.50699 * 126.12363 * 0.03811 * 9 4 3 11 11 N 1.46903 * 109.47066 * 89.71547 * 10 9 4 12 12 C 1.47957 * 111.00079 * 189.99834 * 11 10 9 13 13 C 1.53937 * 86.18208 * 222.41605 * 12 11 10 14 14 O 1.42896 * 113.73148 * 269.25755 * 13 12 11 15 15 C 1.50694 * 113.73443 * 138.07827 * 13 12 11 16 16 H 1.08000 * 120.00563 * 0.02562 * 15 13 12 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 13 12 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.47958 * 111.00224 * 90.63512 * 11 10 9 24 24 H 1.08992 * 109.47322 * 59.99473 * 1 2 3 25 25 H 1.08997 * 109.46924 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46551 * 299.99486 * 1 2 3 27 27 H 1.08998 * 109.46629 * 60.00218 * 3 2 1 28 28 H 1.09001 * 109.47338 * 300.00560 * 3 2 1 29 29 H 1.08006 * 125.89880 * 179.73702 * 6 5 4 30 30 H 1.09004 * 109.47182 * 269.97426 * 8 7 6 31 31 H 1.09000 * 109.47165 * 29.97207 * 8 7 6 32 32 H 1.08998 * 109.47229 * 149.97529 * 8 7 6 33 33 H 1.08993 * 109.47490 * 329.71301 * 10 9 4 34 34 H 1.09002 * 109.47190 * 209.70832 * 10 9 4 35 35 H 1.08999 * 113.76060 * 108.09601 * 12 11 10 36 36 H 1.09001 * 113.85944 * 336.74419 * 12 11 10 37 37 H 0.96709 * 114.00030 * 178.09403 * 14 13 12 38 38 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 39 39 H 1.09003 * 113.76031 * 23.26533 * 23 11 10 40 40 H 1.08999 * 113.76380 * 251.90073 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 7 3.4707 1.1898 -0.0006 5 7 4.2925 1.1214 1.1318 6 6 5.5344 1.0292 0.7307 7 6 5.5430 1.0308 -0.6680 8 6 6.7636 0.9404 -1.5473 9 6 4.2617 1.1273 -1.0922 10 6 3.8010 1.1648 -2.5265 11 7 3.7549 2.5581 -2.9898 12 6 3.0846 2.6577 -4.3050 13 6 4.2022 3.6460 -4.6844 14 8 3.8864 5.0095 -4.3962 15 6 4.7381 3.4493 -6.0791 16 1 4.3344 2.6695 -6.7078 17 6 5.7439 4.2650 -6.5525 18 7 6.2352 5.2149 -5.7871 19 14 6.4087 4.0207 -8.2810 20 1 7.5424 3.0623 -8.2446 21 1 5.3339 3.4831 -9.1534 22 1 6.8782 5.3227 -8.8193 23 6 5.0444 2.9589 -3.5944 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.6887 1.8463 0.8900 28 1 1.6887 1.8464 -0.8899 29 1 6.4030 0.9639 1.3692 30 1 7.1348 1.9434 -1.7580 31 1 7.5372 0.3665 -1.0371 32 1 6.5018 0.4460 -2.4827 33 1 2.8069 0.7242 -2.6005 34 1 4.4964 0.5987 -3.1464 35 1 2.0942 3.1108 -4.2601 36 1 3.1029 1.7321 -4.8804 37 1 4.5972 5.6307 -4.6061 38 1 6.9431 5.7885 -6.1201 39 1 5.6372 2.1206 -3.9606 40 1 5.6200 3.6527 -2.9817 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343040554.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:48 Heat of formation + Delta-G solvation = 26.395522 kcal Electronic energy + Delta-G solvation = -22764.426402 eV Core-core repulsion = 19389.789356 eV Total energy + Delta-G solvation = -3374.637046 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.13436 -38.92817 -37.95784 -34.49275 -32.88033 -32.14766 -31.88631 -29.05816 -27.51615 -26.45590 -25.46519 -25.15336 -24.52342 -22.38829 -20.67971 -19.13053 -18.66731 -17.33287 -16.98435 -16.64194 -15.90268 -15.26048 -15.14196 -14.66133 -14.48107 -14.24776 -13.85056 -13.59433 -13.33832 -12.99476 -12.64811 -12.46984 -12.23008 -12.08249 -11.84962 -11.71666 -11.56266 -11.34429 -11.13656 -10.88372 -10.66683 -10.38925 -10.35788 -10.05434 -9.99031 -9.46950 -9.14628 -8.67999 -8.32695 -7.99039 -7.89376 -6.29189 -4.39310 1.96860 2.46451 3.03793 3.17414 3.25576 3.28487 3.86792 4.23024 4.59291 4.69728 4.89599 4.91190 5.03278 5.09539 5.11350 5.21187 5.33455 5.40986 5.53420 5.71462 5.74534 5.88073 5.96994 6.10656 6.14700 6.24868 6.32209 6.36368 6.50721 6.59927 6.70451 6.93371 7.02193 7.07121 7.28259 7.30483 7.73036 7.84447 7.93834 7.96334 8.62341 9.31028 9.61451 10.76673 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.022147 B = 0.004704 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.991828 B = 5950.639952 C = 6629.751651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.409 6.409 3 C 0.312 3.688 4 N -0.364 5.364 5 N -0.299 5.299 6 C 0.055 3.945 7 C -0.237 4.237 8 C -0.071 4.071 9 C 0.125 3.875 10 C 0.074 3.926 11 N -0.476 5.476 12 C 0.008 3.992 13 C 0.245 3.755 14 O -0.573 6.573 15 C -0.539 4.539 16 H 0.065 0.935 17 C 0.073 3.927 18 N -0.897 5.897 19 Si 0.903 3.097 20 H -0.278 1.278 21 H -0.272 1.272 22 H -0.284 1.284 23 C -0.006 4.006 24 H 0.048 0.952 25 H 0.091 0.909 26 H 0.045 0.955 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.181 0.819 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.390 0.610 38 H 0.271 0.729 39 H 0.063 0.937 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.923 -8.255 8.322 12.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.327 6.327 3 C 0.151 3.849 4 N -0.150 5.150 5 N -0.119 5.119 6 C -0.132 4.132 7 C -0.248 4.248 8 C -0.129 4.129 9 C -0.001 4.001 10 C -0.056 4.056 11 N -0.199 5.199 12 C -0.121 4.121 13 C 0.203 3.797 14 O -0.385 6.385 15 C -0.577 4.577 16 H 0.083 0.917 17 C -0.130 4.130 18 N -0.537 5.537 19 Si 0.730 3.270 20 H -0.204 1.204 21 H -0.197 1.197 22 H -0.209 1.209 23 C -0.135 4.135 24 H 0.066 0.934 25 H 0.109 0.891 26 H 0.064 0.936 27 H 0.101 0.899 28 H 0.110 0.890 29 H 0.198 0.802 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.245 0.755 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.463 -8.116 10.098 14.478 hybrid contribution 1.605 -0.320 -2.215 2.754 sum -4.859 -8.436 7.883 12.527 Atomic orbital electron populations 1.22695 0.79063 1.03326 1.00529 1.87851 1.20760 1.28578 1.95532 1.22189 0.75080 0.84782 1.02842 1.48151 1.05159 1.58048 1.03616 1.77266 1.01763 1.24664 1.08164 1.23717 0.95129 0.99818 0.94514 1.19877 0.94421 1.16489 0.94015 1.20100 0.93430 1.01898 0.97453 1.20755 0.90578 0.98695 0.90045 1.21284 1.00943 0.94481 0.88877 1.68584 1.12222 1.15469 1.23617 1.24178 1.00054 0.99162 0.88661 1.19731 0.88181 0.80703 0.91063 1.86031 1.46852 1.17466 1.88130 1.21631 1.19299 1.17245 0.99508 0.91656 1.25044 0.95495 0.94406 0.98020 1.69345 1.27942 1.19684 1.36732 0.86424 0.79158 0.77744 0.83696 1.20395 1.19700 1.20924 1.24791 0.91684 0.99732 0.97270 0.93350 0.89102 0.93593 0.89947 0.89001 0.80212 0.91625 0.92313 0.92265 0.90759 0.91342 0.90609 0.91518 0.75531 0.91840 0.91848 0.90938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 11.01 101.05 1.11 1.48 16 2 O -0.41 -5.60 10.93 -35.23 -0.39 -5.99 16 3 C 0.31 4.39 6.88 59.85 0.41 4.80 16 4 N -0.36 -6.23 3.88 -61.90 -0.24 -6.47 16 5 N -0.30 -5.20 12.58 30.62 0.39 -4.82 16 6 C 0.06 0.86 11.96 -17.37 -0.21 0.65 16 7 C -0.24 -3.91 6.10 -105.05 -0.64 -4.55 16 8 C -0.07 -1.03 9.89 36.01 0.36 -0.67 16 9 C 0.13 2.19 6.49 -82.26 -0.53 1.65 16 10 C 0.07 1.27 4.59 -4.98 -0.02 1.25 16 11 N -0.48 -9.53 6.14 -239.69 -1.47 -11.00 16 12 C 0.01 0.16 7.33 -2.77 -0.02 0.14 16 13 C 0.24 5.97 1.44 -90.84 -0.13 5.84 16 14 O -0.57 -15.18 13.48 -35.23 -0.47 -15.66 16 15 C -0.54 -13.88 8.62 -34.44 -0.30 -14.18 16 16 H 0.07 1.65 7.81 -52.49 -0.41 1.24 16 17 C 0.07 1.86 5.40 -17.82 -0.10 1.76 16 18 N -0.90 -23.49 11.09 55.43 0.61 -22.88 16 19 Si 0.90 19.89 29.54 -169.99 -5.02 14.87 16 20 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 C -0.01 -0.13 7.08 -2.77 -0.02 -0.15 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.09 1.24 7.66 -51.93 -0.40 0.84 16 29 H 0.18 2.12 8.06 -52.48 -0.42 1.70 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.86 7.13 -51.93 -0.37 0.49 16 33 H 0.07 1.18 7.67 -51.93 -0.40 0.78 16 34 H 0.07 1.15 6.38 -51.93 -0.33 0.82 16 35 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 36 H 0.07 1.27 7.88 -51.93 -0.41 0.87 16 37 H 0.39 10.54 6.46 45.56 0.29 10.83 16 38 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 39 H 0.06 1.37 7.41 -51.93 -0.38 0.98 16 40 H 0.07 1.73 8.14 -51.93 -0.42 1.31 16 LS Contribution 335.64 15.07 5.06 5.06 Total: -1.00 -29.97 335.64 -6.97 -36.94 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -5.35 Total: 11.91 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -0.09 Total: -1.96 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: -0.71 Total: -45.17 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.86 Total: -21.65 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.97 -6.97 -36.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343040554.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.337 kcal (2) G-P(sol) polarization free energy of solvation -29.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds