Wall clock time and date at job start Tue Mar 31 2020 06:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 113.99986 * 2 1 4 4 C 1.53001 * 109.46986 * 180.02562 * 3 2 1 5 5 N 1.46490 * 109.47305 * 65.00085 * 4 3 2 6 6 C 1.46497 * 120.00322 * 270.00146 * 5 4 3 7 7 C 1.50707 * 109.47162 * 269.99844 * 6 5 4 8 8 H 1.07998 * 119.99576 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00057 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99930 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 119.99982 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47235 * 59.99855 * 11 9 7 13 13 H 1.48500 * 109.47168 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47142 * 299.99797 * 11 9 7 15 15 C 1.34780 * 120.00111 * 89.99580 * 5 4 3 16 16 O 1.21280 * 120.00423 * 179.97438 * 15 5 4 17 17 C 1.50701 * 119.99795 * 0.02562 * 15 5 4 18 18 C 1.50703 * 109.47064 * 179.97438 * 17 15 5 19 19 N 1.36884 * 126.58826 * 264.68319 * 18 17 15 20 20 H 0.97000 * 126.39921 * 0.02562 * 19 18 17 21 21 C 1.35045 * 107.20242 * 179.89684 * 19 18 17 22 22 N 1.30505 * 108.69945 * 0.37487 * 21 19 18 23 23 C 1.34122 * 109.25388 * 359.76664 * 22 21 19 24 24 C 1.50707 * 125.98844 * 180.02562 * 23 22 21 25 25 H 1.09002 * 109.47554 * 59.99782 * 1 2 3 26 26 H 1.09002 * 109.47549 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47355 * 300.00190 * 1 2 3 28 28 H 1.08998 * 109.46935 * 60.00247 * 3 2 1 29 29 H 1.08997 * 109.47566 * 300.00111 * 3 2 1 30 30 H 1.09006 * 109.47320 * 304.99966 * 4 3 2 31 31 H 1.09002 * 109.47139 * 185.00192 * 4 3 2 32 32 H 1.09000 * 109.47018 * 29.99405 * 6 5 4 33 33 H 1.09000 * 109.47828 * 149.99700 * 6 5 4 34 34 H 0.97001 * 119.99961 * 180.02562 * 10 9 7 35 35 H 1.09002 * 109.47060 * 299.99722 * 17 15 5 36 36 H 1.09001 * 109.47380 * 59.99809 * 17 15 5 37 37 H 1.07999 * 125.65232 * 180.09656 * 21 19 18 38 38 H 1.08997 * 109.47196 * 269.99651 * 24 23 22 39 39 H 1.09003 * 109.47027 * 29.99485 * 24 23 22 40 40 H 1.09000 * 109.47184 * 149.99442 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.1051 -0.8920 -1.3428 7 6 5.5010 -1.2978 -0.9450 8 1 6.2197 -0.5459 -0.6545 9 6 5.8603 -2.6289 -0.9518 10 7 4.9847 -3.5445 -1.3051 11 14 7.5901 -3.1319 -0.4581 12 1 7.8530 -2.6965 0.9372 13 1 7.7211 -4.6084 -0.5483 14 1 8.5713 -2.4908 -1.3698 15 6 4.2614 1.3338 -2.3218 16 8 4.6263 0.8204 -3.3582 17 6 4.1286 2.8320 -2.2290 18 6 4.5051 3.4525 -3.5498 19 7 5.7313 3.9527 -3.8962 20 1 6.5232 3.9743 -3.3365 21 6 5.6332 4.4081 -5.1638 22 7 4.4137 4.2125 -5.5855 23 6 3.6984 3.6267 -4.6139 24 6 2.2464 3.2319 -4.6984 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.8515 0.5681 0.8410 31 1 3.9785 2.1765 0.0890 32 1 3.3852 -1.3629 -0.6734 33 1 3.9119 -1.2114 -2.3669 34 1 5.2374 -4.4810 -1.3096 35 1 3.0981 3.0911 -1.9861 36 1 4.7912 3.2080 -1.4494 37 1 6.4305 4.8631 -5.7327 38 1 1.6242 4.0611 -4.3617 39 1 1.9963 2.9857 -5.7304 40 1 2.0685 2.3634 -4.0643 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001443216732.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:41 Heat of formation + Delta-G solvation = -25.303747 kcal Electronic energy + Delta-G solvation = -22668.282834 eV Core-core repulsion = 19291.403939 eV Total energy + Delta-G solvation = -3376.878895 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.92547 -39.07636 -37.48878 -34.83600 -32.92629 -32.89047 -32.21182 -29.62416 -28.90264 -27.01938 -25.97276 -25.46333 -22.78199 -22.62559 -21.45600 -19.58586 -18.54574 -17.47819 -16.82027 -16.44389 -16.08631 -15.60272 -15.07407 -15.00557 -14.73468 -14.50621 -14.17349 -13.83459 -13.00657 -12.94859 -12.66240 -12.60777 -12.45768 -12.10773 -11.92810 -11.87266 -11.74118 -11.57374 -11.20982 -10.91789 -10.84623 -10.40674 -10.12393 -9.80003 -9.68798 -9.59672 -9.44902 -8.95342 -8.36622 -7.98584 -7.62989 -5.97855 -4.02336 2.17992 3.24904 3.29122 3.32757 3.36875 3.37984 3.42518 3.95355 4.05640 4.48336 4.69755 4.92197 5.05241 5.10846 5.25242 5.35107 5.38001 5.40232 5.47616 5.51363 5.53797 5.56576 5.60027 5.68540 5.85609 5.87384 6.14918 6.17026 6.20118 6.37745 6.94228 7.23868 7.39192 7.53918 7.57297 7.61790 7.99622 8.24260 8.31330 8.46322 8.94782 9.11371 9.61420 11.10128 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012746 B = 0.006073 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.232203 B = 4609.167805 C = 6158.203031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.370 6.370 3 C 0.043 3.957 4 C 0.110 3.890 5 N -0.589 5.589 6 C 0.251 3.749 7 C -0.527 4.527 8 H 0.053 0.947 9 C 0.062 3.938 10 N -0.892 5.892 11 Si 0.895 3.105 12 H -0.278 1.278 13 H -0.286 1.286 14 H -0.278 1.278 15 C 0.502 3.498 16 O -0.527 6.527 17 C -0.070 4.070 18 C 0.007 3.993 19 N -0.562 5.562 20 H 0.417 0.583 21 C 0.181 3.819 22 N -0.493 5.493 23 C 0.013 3.987 24 C -0.066 4.066 25 H 0.036 0.964 26 H 0.084 0.916 27 H 0.035 0.965 28 H 0.052 0.948 29 H 0.045 0.955 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.046 0.954 33 H 0.039 0.961 34 H 0.263 0.737 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.205 0.795 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.317 16.088 2.666 17.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.288 6.288 3 C -0.035 4.035 4 C -0.015 4.015 5 N -0.321 5.321 6 C 0.132 3.868 7 C -0.566 4.566 8 H 0.071 0.929 9 C -0.140 4.140 10 N -0.531 5.531 11 Si 0.723 3.277 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.204 1.204 15 C 0.287 3.713 16 O -0.403 6.403 17 C -0.111 4.111 18 C -0.109 4.109 19 N -0.165 5.165 20 H 0.255 0.745 21 C -0.103 4.103 22 N -0.214 5.214 23 C -0.116 4.116 24 C -0.123 4.123 25 H 0.055 0.945 26 H 0.102 0.898 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.111 0.889 31 H 0.098 0.902 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.124 0.876 36 H 0.111 0.889 37 H 0.222 0.778 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.380 15.611 1.283 16.562 hybrid contribution 1.624 -0.295 1.404 2.167 sum -3.756 15.317 2.687 15.998 Atomic orbital electron populations 1.22707 0.81972 1.02654 0.99148 1.88109 1.18776 1.26827 1.95132 1.23118 0.95275 0.85565 0.99561 1.21532 0.91310 0.98891 0.89746 1.48176 1.64393 1.09888 1.09634 1.19301 0.96635 0.71992 0.98889 1.21410 0.97478 0.92144 1.45552 0.92875 1.24910 0.97278 0.96447 0.95400 1.69932 1.34299 1.01005 1.47878 0.86615 0.84866 0.77386 0.78823 1.20331 1.21176 1.20406 1.20149 0.79048 0.87753 0.84377 1.90716 1.45825 1.74572 1.29168 1.20219 1.03656 0.94271 0.92991 1.20289 0.86106 1.06040 0.98490 1.43104 1.11595 1.47199 1.14639 0.74531 1.24765 0.97304 1.04185 0.84008 1.70115 1.02899 1.18333 1.30004 1.20346 0.97303 1.04004 0.89917 1.20002 0.88874 1.00451 1.03021 0.94497 0.89756 0.94687 0.93027 0.93660 0.88894 0.90224 0.93576 0.94306 0.92758 0.87594 0.88913 0.77831 0.91883 0.91233 0.91452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.51 16 2 O -0.37 -6.14 9.53 -35.23 -0.34 -6.48 16 3 C 0.04 0.57 6.28 37.16 0.23 0.80 16 4 C 0.11 1.67 5.62 -4.05 -0.02 1.65 16 5 N -0.59 -12.12 2.42 -175.06 -0.42 -12.54 16 6 C 0.25 6.63 4.98 -5.19 -0.03 6.60 16 7 C -0.53 -15.02 9.39 -34.44 -0.32 -15.35 16 8 H 0.05 1.49 7.81 -52.49 -0.41 1.08 16 9 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 10 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 11 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 15 C 0.50 10.11 7.67 -10.98 -0.08 10.02 16 16 O -0.53 -13.39 15.61 5.56 0.09 -13.30 16 17 C -0.07 -0.98 4.36 -29.03 -0.13 -1.11 16 18 C 0.01 0.10 5.73 -81.60 -0.47 -0.37 16 19 N -0.56 -7.33 6.15 -10.30 -0.06 -7.40 16 20 H 0.42 4.13 8.96 -40.82 -0.37 3.76 16 21 C 0.18 2.39 13.04 -90.37 -1.18 1.22 16 22 N -0.49 -8.21 11.25 -10.87 -0.12 -8.33 16 23 C 0.01 0.22 7.09 -82.85 -0.59 -0.37 16 24 C -0.07 -0.93 10.13 36.01 0.36 -0.57 16 25 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.55 7.30 -51.93 -0.38 0.18 16 30 H 0.09 1.53 8.07 -51.93 -0.42 1.11 16 31 H 0.08 0.90 6.44 -51.93 -0.33 0.56 16 32 H 0.05 1.27 7.11 -51.93 -0.37 0.90 16 33 H 0.04 1.18 7.42 -51.93 -0.39 0.80 16 34 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.11 1.22 7.15 -51.93 -0.37 0.85 16 36 H 0.09 1.04 7.40 -51.93 -0.38 0.66 16 37 H 0.21 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.07 0.99 7.89 -51.93 -0.41 0.58 16 LS Contribution 340.66 15.07 5.13 5.13 Total: -1.00 -38.06 340.66 -7.14 -45.20 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -5.92 Total: 1.24 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -1.20 Total: 5.72 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: 0.13 Total: -54.54 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.25 Total: -19.78 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -38.06 -7.14 -45.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001443216732.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.896 kcal (2) G-P(sol) polarization free energy of solvation -38.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds