Wall clock time and date at job start Tue Mar 31 2020 06:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 113.99986 * 2 1 4 4 C 1.53001 * 109.46986 * 180.02562 * 3 2 1 5 5 N 1.46490 * 109.47305 * 65.00085 * 4 3 2 6 6 C 1.46497 * 120.00322 * 270.00146 * 5 4 3 7 7 C 1.50707 * 109.47162 * 269.99844 * 6 5 4 8 8 H 1.07998 * 119.99576 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00057 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99930 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 119.99982 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47235 * 59.99855 * 11 9 7 13 13 H 1.48500 * 109.47168 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47142 * 299.99797 * 11 9 7 15 15 C 1.34780 * 120.00111 * 89.99580 * 5 4 3 16 16 O 1.21280 * 120.00423 * 179.97438 * 15 5 4 17 17 C 1.50701 * 119.99795 * 0.02562 * 15 5 4 18 18 C 1.50703 * 109.47064 * 179.97438 * 17 15 5 19 19 N 1.36884 * 126.58826 * 264.68319 * 18 17 15 20 20 H 0.97000 * 126.39921 * 0.02562 * 19 18 17 21 21 C 1.35045 * 107.20242 * 179.89684 * 19 18 17 22 22 N 1.30505 * 108.69945 * 0.37487 * 21 19 18 23 23 C 1.34122 * 109.25388 * 359.76664 * 22 21 19 24 24 C 1.50707 * 125.98844 * 180.02562 * 23 22 21 25 25 H 1.09002 * 109.47554 * 59.99782 * 1 2 3 26 26 H 1.09002 * 109.47549 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47355 * 300.00190 * 1 2 3 28 28 H 1.08998 * 109.46935 * 60.00247 * 3 2 1 29 29 H 1.08997 * 109.47566 * 300.00111 * 3 2 1 30 30 H 1.09006 * 109.47320 * 304.99966 * 4 3 2 31 31 H 1.09002 * 109.47139 * 185.00192 * 4 3 2 32 32 H 1.09000 * 109.47018 * 29.99405 * 6 5 4 33 33 H 1.09000 * 109.47828 * 149.99700 * 6 5 4 34 34 H 0.97001 * 119.99961 * 180.02562 * 10 9 7 35 35 H 1.09002 * 109.47060 * 299.99722 * 17 15 5 36 36 H 1.09001 * 109.47380 * 59.99809 * 17 15 5 37 37 H 1.07999 * 125.65232 * 180.09656 * 21 19 18 38 38 H 1.08997 * 109.47196 * 269.99651 * 24 23 22 39 39 H 1.09003 * 109.47027 * 29.99485 * 24 23 22 40 40 H 1.09000 * 109.47184 * 149.99442 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.1051 -0.8920 -1.3428 7 6 5.5010 -1.2978 -0.9450 8 1 6.2197 -0.5459 -0.6545 9 6 5.8603 -2.6289 -0.9518 10 7 4.9847 -3.5445 -1.3051 11 14 7.5901 -3.1319 -0.4581 12 1 7.8530 -2.6965 0.9372 13 1 7.7211 -4.6084 -0.5483 14 1 8.5713 -2.4908 -1.3698 15 6 4.2614 1.3338 -2.3218 16 8 4.6263 0.8204 -3.3582 17 6 4.1286 2.8320 -2.2290 18 6 4.5051 3.4525 -3.5498 19 7 5.7313 3.9527 -3.8962 20 1 6.5232 3.9743 -3.3365 21 6 5.6332 4.4081 -5.1638 22 7 4.4137 4.2125 -5.5855 23 6 3.6984 3.6267 -4.6139 24 6 2.2464 3.2319 -4.6984 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.8515 0.5681 0.8410 31 1 3.9785 2.1765 0.0890 32 1 3.3852 -1.3629 -0.6734 33 1 3.9119 -1.2114 -2.3669 34 1 5.2374 -4.4810 -1.3096 35 1 3.0981 3.0911 -1.9861 36 1 4.7912 3.2080 -1.4494 37 1 6.4305 4.8631 -5.7327 38 1 1.6242 4.0611 -4.3617 39 1 1.9963 2.9857 -5.7304 40 1 2.0685 2.3634 -4.0643 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001443216732.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:40 Heat of formation + Delta-G solvation = -53.030605 kcal Electronic energy + Delta-G solvation = -22669.485161 eV Core-core repulsion = 19291.403939 eV Total energy + Delta-G solvation = -3378.081222 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.00562 -40.61537 -38.68417 -36.48555 -34.84360 -34.00578 -33.58521 -31.09851 -30.12638 -28.69792 -27.04847 -26.77052 -24.67191 -23.85994 -22.57139 -20.80415 -19.94205 -18.62726 -18.58534 -18.12130 -17.33810 -16.94161 -16.67498 -16.20641 -16.07511 -15.79257 -15.61217 -15.15218 -14.43414 -14.26881 -14.16922 -13.74726 -13.63165 -13.55360 -13.31173 -13.09867 -13.02336 -12.98537 -12.76356 -12.67146 -12.51768 -12.16468 -11.88662 -11.68352 -10.92599 -10.83953 -10.61330 -10.57819 -10.46732 -9.37359 -9.11436 -8.18132 -6.33180 1.06771 1.35356 1.39908 1.47135 1.86654 2.14705 2.29487 2.37613 2.56725 3.03269 3.11549 3.64563 3.79500 3.96440 4.06178 4.22320 4.31650 4.40315 4.46411 4.50472 4.55141 4.58883 4.59731 4.66607 4.84744 4.90790 5.01433 5.03658 5.08153 5.23694 5.28239 5.32236 5.60637 5.84489 5.90930 6.11781 6.40549 6.61440 6.76043 6.87622 7.16786 7.31989 7.54278 8.88772 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012746 B = 0.006073 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.232203 B = 4609.167805 C = 6158.203031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.419 6.419 3 C 0.041 3.959 4 C 0.102 3.898 5 N -0.594 5.594 6 C 0.273 3.727 7 C -0.541 4.541 8 H 0.055 0.945 9 C 0.004 3.996 10 N -0.930 5.930 11 Si 0.967 3.033 12 H -0.258 1.258 13 H -0.281 1.281 14 H -0.278 1.278 15 C 0.496 3.504 16 O -0.592 6.592 17 C -0.052 4.052 18 C -0.011 4.011 19 N -0.556 5.556 20 H 0.432 0.568 21 C 0.191 3.809 22 N -0.536 5.536 23 C -0.014 4.014 24 C -0.063 4.063 25 H 0.045 0.955 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.094 0.906 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.130 0.870 32 H 0.027 0.973 33 H -0.017 1.017 34 H 0.265 0.735 35 H 0.138 0.862 36 H 0.132 0.868 37 H 0.246 0.754 38 H 0.090 0.910 39 H 0.058 0.942 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.404 18.693 4.399 19.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.339 6.339 3 C -0.036 4.036 4 C -0.021 4.021 5 N -0.324 5.324 6 C 0.151 3.849 7 C -0.580 4.580 8 H 0.074 0.926 9 C -0.195 4.195 10 N -0.570 5.570 11 Si 0.791 3.209 12 H -0.182 1.182 13 H -0.206 1.206 14 H -0.204 1.204 15 C 0.284 3.716 16 O -0.473 6.473 17 C -0.092 4.092 18 C -0.128 4.128 19 N -0.160 5.160 20 H 0.272 0.728 21 C -0.093 4.093 22 N -0.257 5.257 23 C -0.143 4.143 24 C -0.121 4.121 25 H 0.064 0.936 26 H 0.095 0.905 27 H 0.081 0.919 28 H 0.112 0.888 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.148 0.852 32 H 0.045 0.955 33 H 0.002 0.998 34 H 0.074 0.926 35 H 0.156 0.844 36 H 0.150 0.850 37 H 0.262 0.738 38 H 0.109 0.891 39 H 0.077 0.923 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.482 18.265 3.081 19.057 hybrid contribution 1.306 -1.081 0.818 1.882 sum -3.176 17.184 3.898 17.905 Atomic orbital electron populations 1.22840 0.80133 1.02908 1.00886 1.88049 1.21066 1.29220 1.95540 1.23244 0.93465 0.84781 1.02075 1.21951 0.93308 1.00448 0.86348 1.48119 1.64494 1.07687 1.12121 1.18591 0.95394 0.76111 0.94781 1.21743 0.98318 0.92552 1.45345 0.92640 1.25893 1.01822 0.96516 0.95248 1.70082 1.36639 1.01380 1.48919 0.85485 0.79056 0.77098 0.79239 1.18225 1.20615 1.20362 1.21205 0.77175 0.90283 0.82923 1.90683 1.48668 1.76348 1.31560 1.20181 1.06588 0.88693 0.93770 1.20444 0.86839 1.06601 0.98877 1.43131 1.11559 1.46515 1.14832 0.72778 1.25618 0.97273 1.02404 0.84024 1.70100 1.04547 1.20074 1.30954 1.20775 0.98377 1.04563 0.90559 1.20008 0.88830 1.00994 1.02270 0.93635 0.90465 0.91895 0.88847 0.92458 0.90626 0.85208 0.95524 0.99841 0.92624 0.84415 0.85012 0.73769 0.89100 0.92251 0.92573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.01 113.37 1.25 1.92 16 2 O -0.42 -13.77 9.53 -148.98 -1.42 -15.19 16 3 C 0.04 0.99 6.28 71.98 0.45 1.44 16 4 C 0.10 2.88 5.62 86.38 0.49 3.36 16 5 N -0.59 -24.48 2.42 -826.16 -2.00 -26.48 16 6 C 0.27 15.14 4.98 85.64 0.43 15.57 16 7 C -0.54 -31.62 9.39 25.60 0.24 -31.38 16 8 H 0.06 3.13 7.81 -2.91 -0.02 3.11 16 9 C 0.00 0.22 5.46 84.65 0.46 0.68 16 10 N -0.93 -58.27 13.29 21.45 0.28 -57.98 16 11 Si 0.97 45.54 29.54 68.60 2.03 47.57 16 12 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 13 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 14 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 15 C 0.50 19.85 7.67 87.66 0.67 20.52 16 16 O -0.59 -31.17 15.61 -3.03 -0.05 -31.21 16 17 C -0.05 -1.31 4.36 29.10 0.13 -1.18 16 18 C -0.01 -0.33 5.73 40.95 0.23 -0.09 16 19 N -0.56 -13.20 6.15 -186.49 -1.15 -14.34 16 20 H 0.43 7.30 8.96 -92.71 -0.83 6.47 16 21 C 0.19 4.65 13.04 180.26 2.35 7.00 16 22 N -0.54 -17.32 11.25 -188.31 -2.12 -19.44 16 23 C -0.01 -0.46 7.09 41.39 0.29 -0.17 16 24 C -0.06 -1.78 10.13 71.24 0.72 -1.05 16 25 H 0.05 0.96 8.14 -2.39 -0.02 0.95 16 26 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 28 H 0.09 1.47 8.14 -2.39 -0.02 1.46 16 29 H 0.06 1.22 7.30 -2.39 -0.02 1.21 16 30 H 0.08 2.41 8.07 -2.38 -0.02 2.39 16 31 H 0.13 2.31 6.44 -2.39 -0.02 2.29 16 32 H 0.03 1.56 7.11 -2.39 -0.02 1.55 16 33 H -0.02 -1.09 7.42 -2.39 -0.02 -1.11 16 34 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 35 H 0.14 2.61 7.15 -2.39 -0.02 2.59 16 36 H 0.13 2.30 7.40 -2.39 -0.02 2.29 16 37 H 0.25 3.43 8.06 -2.91 -0.02 3.41 16 38 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.06 1.66 7.89 -2.39 -0.02 1.64 16 Total: -1.00 -89.39 340.66 3.51 -85.88 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.22 Total: 14.60 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: 7.71 Total: 16.62 kcal Atomic # 7 Polarization: -113.27 SS G_CDS: -4.98 Total: -118.25 kcal Atomic # 8 Polarization: -44.94 SS G_CDS: -1.47 Total: -46.41 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -89.39 3.51 -85.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001443216732.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.847 kcal (2) G-P(sol) polarization free energy of solvation -89.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds