Wall clock time and date at job start Tue Mar 31 2020 06:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29938 * 125.37889 * 2 1 4 4 C 1.36066 * 108.47981 * 179.97438 * 3 2 1 5 5 C 1.47413 * 126.45127 * 179.97438 * 4 3 2 6 6 O 1.21609 * 120.00397 * 180.02562 * 5 4 3 7 7 N 1.34780 * 120.00246 * 0.02562 * 5 4 3 8 8 C 1.46497 * 120.00511 * 180.02562 * 7 5 4 9 9 H 1.08995 * 109.46769 * 34.99573 * 8 7 5 10 10 C 1.52999 * 109.46888 * 275.00115 * 8 7 5 11 11 C 1.52995 * 109.47366 * 155.00067 * 8 7 5 12 12 N 1.46504 * 109.47241 * 305.00036 * 11 8 7 13 13 C 1.46494 * 119.99830 * 270.00072 * 12 11 8 14 14 C 1.36941 * 119.99753 * 89.99726 * 12 11 8 15 15 H 1.07995 * 120.00095 * 22.34562 * 14 12 11 16 16 C 1.38810 * 119.99680 * 202.34353 * 14 12 11 17 17 N 1.31614 * 120.00088 * 11.36282 * 16 14 12 18 18 Si 1.86798 * 119.99932 * 191.36993 * 16 14 12 19 19 H 1.48505 * 109.46963 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47624 * 119.99491 * 18 16 14 21 21 H 1.48496 * 109.47116 * 239.99662 * 18 16 14 22 22 C 1.36092 * 107.09759 * 0.23021 * 4 3 2 23 23 C 1.50702 * 126.52445 * 179.77492 * 22 4 3 24 24 O 1.34044 * 125.37934 * 179.97438 * 2 1 3 25 25 H 1.09003 * 109.46565 * 89.99658 * 1 2 3 26 26 H 1.08996 * 109.47418 * 209.99859 * 1 2 3 27 27 H 1.08996 * 109.47170 * 330.00531 * 1 2 3 28 28 H 0.97002 * 119.99320 * 0.02562 * 7 5 4 29 29 H 1.08999 * 109.47088 * 179.97438 * 10 8 7 30 30 H 1.08995 * 109.47495 * 299.99893 * 10 8 7 31 31 H 1.09007 * 109.47260 * 59.99782 * 10 8 7 32 32 H 1.09007 * 109.46857 * 64.99844 * 11 8 7 33 33 H 1.09002 * 109.47363 * 184.99593 * 11 8 7 34 34 H 1.09005 * 109.46869 * 94.22441 * 13 12 11 35 35 H 1.09003 * 109.47094 * 214.21841 * 13 12 11 36 36 H 1.08997 * 109.47330 * 334.22376 * 13 12 11 37 37 H 0.97004 * 119.99711 * 179.97438 * 17 16 14 38 38 H 1.09000 * 109.47316 * 89.99279 * 23 22 4 39 39 H 1.09002 * 109.47491 * 209.99870 * 23 22 4 40 40 H 1.09010 * 109.46928 * 329.99899 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6639 0.0006 5 6 4.7439 1.5438 0.0003 6 8 5.8605 1.0619 0.0004 7 7 4.5879 2.8826 -0.0002 8 6 5.7632 3.7571 -0.0011 9 1 6.5569 3.2984 -0.5906 10 6 6.2481 3.9612 1.4356 11 6 5.3917 5.1102 -0.6110 12 7 4.8159 4.9042 -1.9423 13 6 5.6849 4.8872 -3.1215 14 6 3.4654 4.7274 -2.0842 15 1 2.7908 5.0849 -1.3204 16 6 2.9636 4.0888 -3.2099 17 7 3.7798 3.4581 -4.0274 18 14 1.1299 4.1246 -3.5646 19 1 0.4349 4.8929 -2.5006 20 1 0.8925 4.7730 -4.8793 21 1 0.6045 2.7361 -3.5954 22 6 3.5660 -0.6970 -0.0043 23 6 4.7801 -1.5897 -0.0104 24 8 2.2831 -1.0929 0.0005 25 1 -0.3632 0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5137 28 1 3.6973 3.2670 0.0001 29 1 7.1228 4.6115 1.4350 30 1 5.4544 4.4198 2.0253 31 1 6.5128 2.9972 1.8702 32 1 4.6620 5.6084 0.0274 33 1 6.2851 5.7292 -0.6933 34 1 5.9616 3.8589 -3.3542 35 1 5.1552 5.3216 -3.9695 36 1 6.5843 5.4685 -2.9185 37 1 3.4290 3.0115 -4.8139 38 1 5.0754 -1.8085 1.0158 39 1 4.5444 -2.5202 -0.5270 40 1 5.5988 -1.0860 -0.5245 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498410182.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:53 Heat of formation + Delta-G solvation = 2.193172 kcal Electronic energy + Delta-G solvation = -23224.789468 eV Core-core repulsion = 19849.102929 eV Total energy + Delta-G solvation = -3375.686539 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.11513 -38.93234 -36.27010 -34.58180 -33.93286 -32.77464 -31.25821 -30.13597 -29.73277 -26.16331 -25.91796 -25.53421 -23.24786 -21.81323 -21.10117 -19.93813 -19.60442 -17.52114 -16.77011 -16.57425 -15.48519 -15.43709 -14.79893 -14.26936 -13.99703 -13.83279 -13.63508 -13.37523 -13.16024 -12.94516 -12.78843 -12.62899 -12.56649 -12.16013 -12.10754 -11.84842 -11.35770 -11.23211 -10.86721 -10.80275 -10.64375 -10.41455 -10.32915 -10.19492 -9.95749 -9.76498 -9.39139 -8.52195 -8.49867 -8.13162 -6.71459 -5.67494 -3.12805 1.43724 2.42327 2.72519 3.39681 3.46384 3.48274 3.76520 4.01508 4.22995 4.54175 4.87468 5.20253 5.24883 5.39727 5.41439 5.53396 5.53780 5.57567 5.63216 5.70821 5.82346 5.93889 6.03487 6.11722 6.21126 6.23945 6.30363 6.41581 6.52270 6.57532 6.79142 6.93281 7.32800 7.43308 7.77971 7.81273 7.85438 8.40248 8.43648 8.95810 9.27621 9.91220 10.40176 11.37188 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012483 B = 0.008432 C = 0.005906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.600738 B = 3320.022893 C = 4740.203926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.180 3.820 3 N -0.443 5.443 4 C -0.053 4.053 5 C 0.602 3.398 6 O -0.559 6.559 7 N -0.666 5.666 8 C 0.117 3.883 9 H 0.078 0.922 10 C -0.159 4.159 11 C 0.142 3.858 12 N -0.598 5.598 13 C 0.165 3.835 14 C -0.252 4.252 15 H 0.067 0.933 16 C 0.010 3.990 17 N -0.901 5.901 18 Si 0.899 3.101 19 H -0.277 1.277 20 H -0.292 1.292 21 H -0.292 1.292 22 C 0.020 3.980 23 C -0.069 4.069 24 O -0.204 6.204 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.101 0.899 28 H 0.413 0.587 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.027 0.973 35 H 0.044 0.956 36 H -0.004 1.004 37 H 0.249 0.751 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.014 -6.360 9.681 11.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.028 4.028 3 N -0.174 5.174 4 C -0.174 4.174 5 C 0.387 3.613 6 O -0.440 6.440 7 N -0.314 5.314 8 C 0.009 3.991 9 H 0.096 0.904 10 C -0.218 4.218 11 C 0.013 3.987 12 N -0.320 5.320 13 C 0.020 3.980 14 C -0.382 4.382 15 H 0.085 0.915 16 C -0.189 4.189 17 N -0.546 5.546 18 Si 0.729 3.271 19 H -0.202 1.202 20 H -0.220 1.220 21 H -0.219 1.219 22 C -0.036 4.036 23 C -0.125 4.125 24 O -0.092 6.092 25 H 0.110 0.890 26 H 0.104 0.896 27 H 0.120 0.880 28 H 0.250 0.750 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.045 0.955 35 H 0.063 0.937 36 H 0.014 0.986 37 H 0.060 0.940 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.508 -6.098 9.490 11.380 hybrid contribution -1.312 -0.667 -0.485 1.550 sum -2.820 -6.765 9.004 11.610 Atomic orbital electron populations 1.20237 0.81303 1.04817 1.04768 1.26136 0.96380 0.78432 1.01902 1.70799 1.00915 1.29566 1.16071 1.21645 0.92342 0.92168 1.11228 1.16610 0.85688 0.82422 0.76538 1.90682 1.24343 1.75578 1.53376 1.45543 1.11102 1.04305 1.70485 1.21902 0.88237 0.93951 0.95043 0.90409 1.22157 1.00707 1.01404 0.97547 1.21199 0.97057 0.92492 0.87937 1.43916 1.04286 1.84055 0.99787 1.20787 0.89996 0.98191 0.89010 1.19107 0.81955 1.31365 1.05772 0.91508 1.24952 0.97208 0.97630 0.99110 1.70088 1.32858 1.36466 1.15177 0.86260 0.85907 0.77181 0.77720 1.20193 1.21953 1.21892 1.23612 0.83642 0.94696 1.01601 1.20502 0.90596 0.97428 1.04019 1.84249 1.16475 1.38068 1.70372 0.89003 0.89586 0.88013 0.75025 0.92159 0.92986 0.92947 0.93309 0.92860 0.95488 0.93710 0.98598 0.94047 0.89619 0.90699 0.86941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.59 10.51 36.01 0.38 -0.21 16 2 C 0.18 2.97 8.30 -13.08 -0.11 2.86 16 3 N -0.44 -8.84 11.06 -7.66 -0.08 -8.92 16 4 C -0.05 -1.09 6.99 -83.02 -0.58 -1.67 16 5 C 0.60 13.20 7.78 -12.52 -0.10 13.10 16 6 O -0.56 -12.66 14.47 5.27 0.08 -12.58 16 7 N -0.67 -14.23 4.48 -54.89 -0.25 -14.47 16 8 C 0.12 2.29 2.88 -67.94 -0.20 2.09 16 9 H 0.08 1.72 7.58 -51.93 -0.39 1.32 16 10 C -0.16 -2.51 9.48 37.16 0.35 -2.16 16 11 C 0.14 2.84 5.36 -4.04 -0.02 2.81 16 12 N -0.60 -14.76 2.82 -181.12 -0.51 -15.27 16 13 C 0.16 4.12 9.01 59.84 0.54 4.66 16 14 C -0.25 -6.73 8.02 -15.06 -0.12 -6.85 16 15 H 0.07 1.75 7.84 -52.49 -0.41 1.34 16 16 C 0.01 0.27 5.13 -17.43 -0.09 0.18 16 17 N -0.90 -26.51 10.59 55.49 0.59 -25.92 16 18 Si 0.90 22.12 29.57 -169.99 -5.03 17.09 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 21 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 22 C 0.02 0.36 7.44 -35.08 -0.26 0.10 16 23 C -0.07 -0.96 9.88 36.01 0.36 -0.61 16 24 O -0.20 -3.35 10.73 6.53 0.07 -3.28 16 25 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.41 9.15 7.13 -40.82 -0.29 8.86 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.05 0.93 8.03 -51.93 -0.42 0.52 16 33 H 0.05 0.96 7.86 -51.93 -0.41 0.55 16 34 H 0.03 0.75 7.42 -51.93 -0.39 0.36 16 35 H 0.04 1.20 7.19 -51.93 -0.37 0.82 16 36 H 0.00 -0.10 7.84 -51.93 -0.41 -0.51 16 37 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.11 1.79 6.48 -51.92 -0.34 1.45 16 LS Contribution 336.63 15.07 5.07 5.07 Total: -1.00 -32.88 336.63 -5.85 -38.73 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -5.94 Total: 5.25 kcal Atomic # 6 Polarization: 14.15 SS G_CDS: 0.15 Total: 14.30 kcal Atomic # 7 Polarization: -64.32 SS G_CDS: -0.25 Total: -64.58 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: 0.15 Total: -15.87 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.09 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.88 -5.85 -38.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498410182.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.925 kcal (2) G-P(sol) polarization free energy of solvation -32.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds