Wall clock time and date at job start Tue Mar 31 2020 06:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29934 * 125.37456 * 2 1 4 4 C 1.36069 * 108.47565 * 180.16692 * 3 2 1 5 5 C 1.47417 * 126.45007 * 179.82499 * 4 3 2 6 6 O 1.21612 * 120.00019 * 179.68834 * 5 4 3 7 7 N 1.34774 * 120.00020 * 359.68906 * 5 4 3 8 8 C 1.46507 * 120.00213 * 180.02562 * 7 5 4 9 9 H 1.08994 * 109.46872 * 325.00086 * 8 7 5 10 10 C 1.52999 * 109.47247 * 84.99764 * 8 7 5 11 11 C 1.52996 * 109.46881 * 204.99910 * 8 7 5 12 12 N 1.46495 * 109.47470 * 55.00117 * 11 8 7 13 13 C 1.46503 * 120.00116 * 269.99656 * 12 11 8 14 14 C 1.36934 * 120.00095 * 89.99497 * 12 11 8 15 15 H 1.08000 * 120.00090 * 339.79078 * 14 12 11 16 16 C 1.38813 * 119.99935 * 160.06948 * 14 12 11 17 17 N 1.31614 * 120.00008 * 344.56197 * 16 14 12 18 18 Si 1.86801 * 120.00094 * 164.55971 * 16 14 12 19 19 H 1.48499 * 109.47160 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47184 * 119.99871 * 18 16 14 21 21 H 1.48502 * 109.47206 * 239.99957 * 18 16 14 22 22 C 1.36092 * 107.10055 * 359.56246 * 4 3 2 23 23 C 1.50703 * 126.52231 * 180.23862 * 22 4 3 24 24 O 1.34047 * 125.38101 * 179.68404 * 2 1 3 25 25 H 1.09001 * 109.46368 * 180.34509 * 1 2 3 26 26 H 1.08996 * 109.46828 * 300.34155 * 1 2 3 27 27 H 1.09002 * 109.47264 * 60.34618 * 1 2 3 28 28 H 0.97005 * 120.00015 * 359.97438 * 7 5 4 29 29 H 1.08993 * 109.47404 * 179.97438 * 10 8 7 30 30 H 1.08999 * 109.46978 * 300.00604 * 10 8 7 31 31 H 1.09005 * 109.46951 * 59.99850 * 10 8 7 32 32 H 1.08997 * 109.47277 * 294.99577 * 11 8 7 33 33 H 1.09004 * 109.46964 * 174.99868 * 11 8 7 34 34 H 1.08995 * 109.47015 * 264.78494 * 13 12 11 35 35 H 1.09006 * 109.46500 * 24.78064 * 13 12 11 36 36 H 1.09001 * 109.47076 * 144.77688 * 13 12 11 37 37 H 0.97007 * 120.00138 * 180.02562 * 17 16 14 38 38 H 1.09005 * 109.46693 * 90.00556 * 23 22 4 39 39 H 1.09002 * 109.46977 * 209.99490 * 23 22 4 40 40 H 1.08996 * 109.47476 * 329.99916 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0595 0.0000 4 6 3.5612 0.6639 -0.0038 5 6 4.7439 1.5439 -0.0087 6 8 5.8604 1.0620 -0.0060 7 7 4.5878 2.8826 -0.0162 8 6 5.7631 3.7572 -0.0217 9 1 6.5574 3.3020 0.5699 10 6 6.2467 3.9526 -1.4600 11 6 5.3921 5.1138 0.5805 12 7 4.8175 4.9159 1.9134 13 6 3.3729 4.7277 2.0679 14 6 5.6308 4.9067 3.0151 15 1 6.6882 4.7173 2.9041 16 6 5.0951 5.1351 4.2751 17 7 3.8914 5.6538 4.3943 18 14 6.0826 4.7060 5.8017 19 1 7.3952 4.1401 5.3992 20 1 6.2988 5.9315 6.6120 21 1 5.3385 3.7048 6.6074 22 6 3.5660 -0.6970 0.0039 23 6 4.7803 -1.5895 0.0083 24 8 2.2832 -1.0929 0.0060 25 1 -0.3632 -1.0277 0.0062 26 1 -0.3633 0.5191 0.8869 27 1 -0.3634 0.5084 -0.8931 28 1 3.6972 3.2670 -0.0187 29 1 7.1208 4.6036 -1.4642 30 1 6.5109 2.9861 -1.8890 31 1 5.4524 4.4077 -2.0517 32 1 4.6618 5.6082 -0.0602 33 1 6.2855 5.7334 0.6583 34 1 2.9042 5.6848 2.2966 35 1 2.9570 4.3316 1.1413 36 1 3.1826 4.0264 2.8804 37 1 3.5172 5.8138 5.2749 38 1 5.0733 -1.7990 1.0372 39 1 4.5456 -2.5247 -0.5001 40 1 5.5999 -1.0906 -0.5086 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498410183.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:56 Heat of formation + Delta-G solvation = 4.361793 kcal Electronic energy + Delta-G solvation = -22745.298777 eV Core-core repulsion = 19369.706277 eV Total energy + Delta-G solvation = -3375.592501 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.37313 -39.21181 -36.41170 -34.84323 -34.05899 -33.00510 -31.27560 -30.32112 -29.97503 -26.23238 -26.12679 -25.55331 -23.47714 -21.95699 -21.20557 -20.11084 -19.94950 -17.66396 -17.01220 -16.74962 -15.69531 -15.46977 -14.98046 -14.43798 -14.23082 -14.02145 -13.64809 -13.52037 -13.40668 -13.15475 -12.83522 -12.79454 -12.77579 -12.34096 -12.10705 -11.96247 -11.42355 -11.28347 -11.12545 -10.80704 -10.69497 -10.60022 -10.55061 -10.12258 -9.95457 -9.81506 -9.62532 -8.77837 -8.55884 -8.36997 -6.72737 -5.68459 -3.11740 1.19353 2.14056 2.49175 3.41035 3.48592 3.50847 3.52521 3.69073 3.97297 4.54344 4.64313 4.97859 4.99491 5.22363 5.32965 5.34330 5.35859 5.46812 5.51085 5.59549 5.67415 5.82703 5.89039 5.98219 6.03239 6.11905 6.18999 6.23409 6.47404 6.56369 6.74248 6.82653 7.09270 7.42564 7.53771 7.74222 7.85948 8.07422 8.41662 8.65138 9.27073 9.90831 10.37939 11.36513 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015082 B = 0.005410 C = 0.004953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.062120 B = 5174.087347 C = 5652.281164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.186 3.814 3 N -0.453 5.453 4 C -0.064 4.064 5 C 0.599 3.401 6 O -0.548 6.548 7 N -0.683 5.683 8 C 0.115 3.885 9 H 0.086 0.914 10 C -0.158 4.158 11 C 0.143 3.857 12 N -0.599 5.599 13 C 0.169 3.831 14 C -0.250 4.250 15 H 0.069 0.931 16 C 0.000 4.000 17 N -0.908 5.908 18 Si 0.901 3.099 19 H -0.278 1.278 20 H -0.291 1.291 21 H -0.291 1.291 22 C 0.029 3.971 23 C -0.072 4.072 24 O -0.201 6.201 25 H 0.086 0.914 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.406 0.594 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.041 0.959 33 H 0.064 0.936 34 H 0.029 0.971 35 H -0.004 1.004 36 H 0.041 0.959 37 H 0.251 0.749 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.059 -11.584 -11.975 17.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.023 4.023 3 N -0.183 5.183 4 C -0.185 4.185 5 C 0.384 3.616 6 O -0.427 6.427 7 N -0.333 5.333 8 C 0.007 3.993 9 H 0.104 0.896 10 C -0.217 4.217 11 C 0.014 3.986 12 N -0.321 5.321 13 C 0.024 3.976 14 C -0.380 4.380 15 H 0.087 0.913 16 C -0.198 4.198 17 N -0.553 5.553 18 Si 0.731 3.269 19 H -0.203 1.203 20 H -0.218 1.218 21 H -0.218 1.218 22 C -0.027 4.027 23 C -0.129 4.129 24 O -0.089 6.089 25 H 0.105 0.895 26 H 0.118 0.882 27 H 0.115 0.885 28 H 0.243 0.757 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.047 0.953 35 H 0.014 0.986 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.607 -11.218 -11.793 16.916 hybrid contribution 0.129 -0.708 1.055 1.278 sum -4.478 -11.927 -10.738 16.661 Atomic orbital electron populations 1.20264 0.81002 1.04571 1.05325 1.26188 0.96443 0.78337 1.01349 1.70747 1.00856 1.29834 1.16904 1.21667 0.92295 0.92325 1.12172 1.16676 0.85851 0.82345 0.76684 1.90723 1.24241 1.75391 1.52330 1.45860 1.11087 1.04697 1.71637 1.22010 0.88068 0.93721 0.95459 0.89601 1.22125 1.00973 1.01509 0.97086 1.21048 0.98090 0.92002 0.87417 1.43860 1.03771 1.83612 1.00834 1.20798 0.82767 0.99190 0.94830 1.19221 0.91774 1.41817 0.85146 0.91332 1.24919 0.97062 0.99822 0.97949 1.70099 1.16801 1.46391 1.22025 0.86233 0.79490 0.77685 0.83479 1.20300 1.21781 1.21767 1.23671 0.83720 0.94636 1.00715 1.20551 0.90336 0.97333 1.04638 1.84289 1.16454 1.38033 1.70128 0.89495 0.88235 0.88455 0.75695 0.91791 0.92893 0.92999 0.94043 0.91764 0.95280 0.98567 0.94033 0.93921 0.89157 0.90557 0.86947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.43 10.51 36.01 0.38 -0.05 16 2 C 0.19 2.47 8.30 -13.08 -0.11 2.36 16 3 N -0.45 -7.48 11.06 -7.65 -0.08 -7.56 16 4 C -0.06 -1.13 6.99 -83.02 -0.58 -1.71 16 5 C 0.60 11.59 7.78 -12.52 -0.10 11.50 16 6 O -0.55 -11.26 14.47 5.27 0.08 -11.19 16 7 N -0.68 -12.94 4.52 -54.88 -0.25 -13.19 16 8 C 0.11 2.14 2.88 -67.93 -0.20 1.94 16 9 H 0.09 1.83 7.58 -51.93 -0.39 1.44 16 10 C -0.16 -2.38 9.48 37.16 0.35 -2.02 16 11 C 0.14 2.89 5.29 -4.05 -0.02 2.87 16 12 N -0.60 -15.06 2.78 -181.12 -0.50 -15.56 16 13 C 0.17 4.20 8.52 59.85 0.51 4.71 16 14 C -0.25 -7.00 9.67 -15.06 -0.15 -7.14 16 15 H 0.07 1.90 7.87 -52.49 -0.41 1.48 16 16 C 0.00 0.01 5.06 -17.43 -0.09 -0.08 16 17 N -0.91 -26.94 10.67 55.49 0.59 -26.35 16 18 Si 0.90 22.59 29.58 -169.99 -5.03 17.56 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 21 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 22 C 0.03 0.43 7.44 -35.08 -0.26 0.17 16 23 C -0.07 -0.85 9.88 36.01 0.36 -0.50 16 24 O -0.20 -2.77 10.73 6.53 0.07 -2.70 16 25 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.41 7.63 5.94 -40.82 -0.24 7.39 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.04 0.77 8.07 -51.93 -0.42 0.35 16 33 H 0.06 1.27 8.04 -51.93 -0.42 0.86 16 34 H 0.03 0.78 7.40 -51.93 -0.38 0.40 16 35 H 0.00 -0.09 5.76 -51.93 -0.30 -0.39 16 36 H 0.04 1.14 7.20 -51.93 -0.37 0.77 16 37 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.11 1.45 6.48 -51.93 -0.34 1.12 16 LS Contribution 334.71 15.07 5.04 5.04 Total: -1.00 -33.53 334.71 -5.78 -39.32 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -5.80 Total: 2.57 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: 0.10 Total: 12.05 kcal Atomic # 7 Polarization: -62.42 SS G_CDS: -0.24 Total: -62.66 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: 0.15 Total: -13.88 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.03 Total: 17.56 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.53 -5.78 -39.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498410183.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.677 kcal (2) G-P(sol) polarization free energy of solvation -33.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds