Wall clock time and date at job start Tue Mar 31 2020 05:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.35835 * 126.45970 * 2 1 4 4 H 0.97003 * 124.91805 * 359.97438 * 3 2 1 5 5 N 1.28451 * 110.16450 * 180.02562 * 3 2 1 6 6 C 1.31927 * 110.21699 * 359.97438 * 5 3 2 7 7 C 1.47528 * 126.46621 * 180.02562 * 6 5 3 8 8 O 1.21590 * 119.99859 * 174.71654 * 7 6 5 9 9 N 1.34775 * 119.99367 * 354.44506 * 7 6 5 10 10 C 1.46501 * 120.00572 * 355.41358 * 9 7 6 11 11 C 1.50698 * 109.46806 * 85.22947 * 10 9 7 12 12 H 1.07996 * 120.00103 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00000 * 180.02562 * 11 10 9 14 14 N 1.31519 * 119.99929 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99961 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46798 * 90.00588 * 15 13 11 17 17 H 1.48505 * 109.47128 * 209.99801 * 15 13 11 18 18 H 1.48493 * 109.47396 * 330.00282 * 15 13 11 19 19 C 1.46504 * 119.99424 * 175.41939 * 9 7 6 20 20 C 1.52997 * 109.47171 * 84.31206 * 19 9 7 21 21 C 1.52995 * 109.47395 * 64.99744 * 20 19 9 22 22 C 1.53008 * 109.47154 * 185.00022 * 20 19 9 23 23 C 1.35777 * 126.45579 * 180.34354 * 2 1 3 24 24 O 1.36086 * 127.27352 * 0.02562 * 23 2 1 25 25 H 1.08991 * 109.46813 * 89.97843 * 1 2 3 26 26 H 1.08996 * 109.46857 * 209.97952 * 1 2 3 27 27 H 1.08998 * 109.46652 * 329.98000 * 1 2 3 28 28 H 1.08998 * 109.47366 * 205.23005 * 10 9 7 29 29 H 1.08998 * 109.46549 * 325.23010 * 10 9 7 30 30 H 0.96999 * 119.99768 * 180.02562 * 14 13 11 31 31 H 1.09005 * 109.46880 * 204.30873 * 19 9 7 32 32 H 1.08998 * 109.47277 * 324.30964 * 19 9 7 33 33 H 1.08998 * 109.47119 * 304.99657 * 20 19 9 34 34 H 1.09003 * 109.47188 * 179.97438 * 21 20 19 35 35 H 1.09000 * 109.47344 * 299.99816 * 21 20 19 36 36 H 1.09010 * 109.47091 * 60.00330 * 21 20 19 37 37 H 1.08991 * 109.47013 * 59.99668 * 22 20 19 38 38 H 1.08999 * 109.47164 * 180.02562 * 22 20 19 39 39 H 1.08998 * 109.46809 * 299.99824 * 22 20 19 40 40 H 0.96705 * 113.99326 * 270.13770 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3143 1.0925 0.0000 4 1 2.0045 2.0117 -0.0004 5 7 3.5472 0.7321 -0.0005 6 6 3.6374 -0.5841 -0.0004 7 6 4.8810 -1.3777 -0.0003 8 8 4.8294 -2.5887 0.0968 9 7 6.0740 -0.7608 -0.1134 10 6 6.1324 0.6858 -0.3372 11 6 6.0555 1.4023 0.9863 12 1 5.9712 0.8366 1.9025 13 6 6.0919 2.7799 1.0276 14 7 6.1931 3.4688 -0.0882 15 14 5.9959 3.6680 2.6682 16 1 7.3662 3.8636 3.2060 17 1 5.3455 4.9895 2.4784 18 1 5.1999 2.8573 3.6242 19 6 7.3124 -1.5371 -0.0127 20 6 7.6456 -2.1450 -1.3766 21 6 7.9498 -1.0251 -2.3736 22 6 8.8678 -3.0559 -1.2442 23 6 2.3139 -1.0921 -0.0065 24 8 1.9326 -2.3984 -0.0149 25 1 -0.3632 0.0004 -1.0276 26 1 -0.3633 -0.8901 0.5135 27 1 -0.3632 0.8898 0.5141 28 1 7.0691 0.9392 -0.8337 29 1 5.2947 0.9904 -0.9645 30 1 6.2190 4.4380 -0.0591 31 1 8.1261 -0.8838 0.3024 32 1 7.1828 -2.3347 0.7187 33 1 6.7955 -2.7272 -1.7324 34 1 8.1876 -1.4583 -3.3452 35 1 7.0791 -0.3763 -2.4681 36 1 8.8000 -0.4429 -2.0179 37 1 8.6511 -3.8537 -0.5339 38 1 9.1055 -3.4886 -2.2159 39 1 9.7179 -2.4737 -0.8884 40 1 1.8201 -2.7808 0.8662 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001542371285.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:17 Heat of formation + Delta-G solvation = -7.052613 kcal Electronic energy + Delta-G solvation = -23215.576989 eV Core-core repulsion = 19839.489523 eV Total energy + Delta-G solvation = -3376.087466 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.08148 -38.82288 -36.80789 -35.81262 -33.94136 -32.25399 -31.98984 -30.39351 -27.52865 -26.74137 -26.43942 -25.76655 -23.30411 -22.11645 -20.81848 -19.91283 -18.15866 -17.66722 -16.63398 -16.51760 -15.79387 -15.29539 -15.26418 -14.40829 -14.37111 -14.07853 -13.79728 -13.40252 -13.15254 -12.82855 -12.67036 -12.46214 -12.30253 -12.10998 -11.92267 -11.68127 -11.29580 -10.95993 -10.93923 -10.77560 -10.53641 -10.41235 -10.13711 -10.03987 -9.60498 -9.47234 -9.08150 -8.73712 -8.39158 -8.20031 -7.54347 -6.00743 -4.00969 2.27460 2.39249 3.25474 3.29060 3.33201 3.37334 3.97939 4.18476 4.43885 4.76811 4.95438 5.11338 5.31720 5.34317 5.40070 5.44068 5.55295 5.56106 5.83305 5.86870 5.97769 6.06727 6.12468 6.14135 6.24934 6.34490 6.43075 6.50023 6.64669 6.72937 6.84565 6.97402 7.36025 7.52901 7.78810 7.91956 8.05844 8.28490 8.40443 8.52591 8.98813 9.15313 9.60405 11.07100 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.010198 B = 0.009355 C = 0.005447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.002136 B = 2992.481956 C = 5138.934838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.038 4.038 3 N -0.384 5.384 4 H 0.445 0.555 5 N -0.156 5.156 6 C -0.038 4.038 7 C 0.598 3.402 8 O -0.563 6.563 9 N -0.583 5.583 10 C 0.236 3.764 11 C -0.500 4.500 12 H 0.052 0.948 13 C 0.068 3.932 14 N -0.893 5.893 15 Si 0.885 3.115 16 H -0.282 1.282 17 H -0.288 1.288 18 H -0.277 1.277 19 C 0.129 3.871 20 C -0.113 4.113 21 C -0.144 4.144 22 C -0.140 4.140 23 C 0.036 3.964 24 O -0.456 6.456 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.035 0.965 29 H 0.056 0.944 30 H 0.259 0.741 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.044 0.956 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.050 0.950 39 H 0.053 0.947 40 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.221 -5.555 -0.981 8.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.162 4.162 3 N -0.101 5.101 4 H 0.290 0.710 5 N 0.008 4.992 6 C -0.199 4.199 7 C 0.385 3.615 8 O -0.442 6.442 9 N -0.312 5.312 10 C 0.116 3.884 11 C -0.540 4.540 12 H 0.070 0.930 13 C -0.133 4.133 14 N -0.533 5.533 15 Si 0.714 3.286 16 H -0.208 1.208 17 H -0.214 1.214 18 H -0.203 1.203 19 C 0.005 3.995 20 C -0.132 4.132 21 C -0.201 4.201 22 C -0.198 4.198 23 C -0.020 4.020 24 O -0.261 6.261 25 H 0.092 0.908 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -5.539 -5.036 -1.619 7.660 hybrid contribution -0.688 0.562 1.504 1.747 sum -6.227 -4.474 -0.115 7.668 Atomic orbital electron populations 1.20170 0.87005 1.03094 1.02799 1.21413 0.94910 0.88158 1.11716 1.43541 1.03746 1.08846 1.53998 0.71042 1.74827 0.98365 1.13153 1.12843 1.22375 0.94765 0.90464 1.12316 1.16836 0.82083 0.85750 0.76851 1.90688 1.87045 1.13254 1.53198 1.48126 1.03826 1.11191 1.68088 1.19717 0.98721 0.72471 0.97508 1.21293 1.48979 0.91131 0.92557 0.92953 1.24760 0.95562 0.97201 0.95805 1.69931 1.51075 1.06538 1.25784 0.86715 0.78183 0.79000 0.84732 1.20806 1.21399 1.20263 1.21370 0.86812 0.95317 0.95965 1.21498 0.98208 0.96805 0.96717 1.21858 1.02155 0.98344 0.97788 1.21743 0.97677 0.99205 1.01196 1.17817 0.89476 0.84450 1.10242 1.84861 1.88987 1.19818 1.32404 0.90848 0.90245 0.91513 0.94711 0.92667 0.93117 0.90330 0.91475 0.90967 0.93712 0.91920 0.92750 0.92837 0.93048 0.92797 0.76783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 10.44 36.01 0.38 -0.37 16 2 C -0.04 -0.58 7.27 -81.70 -0.59 -1.17 16 3 N -0.38 -6.45 6.87 33.71 0.23 -6.22 16 4 H 0.45 6.00 8.96 -190.45 -1.71 4.29 16 5 N -0.16 -3.35 7.82 33.45 0.26 -3.08 16 6 C -0.04 -0.82 6.73 -82.69 -0.56 -1.38 16 7 C 0.60 13.86 7.58 -12.47 -0.09 13.77 16 8 O -0.56 -13.52 16.14 3.46 0.06 -13.47 16 9 N -0.58 -13.04 2.20 -176.29 -0.39 -13.43 16 10 C 0.24 5.78 3.70 -5.19 -0.02 5.76 16 11 C -0.50 -13.18 7.86 -34.44 -0.27 -13.45 16 12 H 0.05 1.44 7.81 -52.49 -0.41 1.03 16 13 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 14 N -0.89 -24.52 13.29 55.43 0.74 -23.78 16 15 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 C 0.13 2.49 4.73 -4.04 -0.02 2.47 16 20 C -0.11 -1.91 3.08 -90.62 -0.28 -2.19 16 21 C -0.14 -2.41 8.36 37.15 0.31 -2.10 16 22 C -0.14 -1.92 9.19 37.16 0.34 -1.58 16 23 C 0.04 0.67 7.28 -39.11 -0.28 0.39 16 24 O -0.46 -7.80 13.21 -21.84 -0.29 -8.09 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.03 0.89 6.84 -51.93 -0.36 0.53 16 29 H 0.06 1.45 5.82 -51.93 -0.30 1.14 16 30 H 0.26 6.82 8.31 -40.82 -0.34 6.49 16 31 H 0.08 1.48 8.03 -51.93 -0.42 1.07 16 32 H 0.07 1.29 7.67 -51.93 -0.40 0.89 16 33 H 0.07 1.36 8.01 -51.93 -0.42 0.94 16 34 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 1.19 6.42 -51.93 -0.33 0.86 16 36 H 0.05 0.88 8.14 -51.92 -0.42 0.46 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.38 4.86 9.07 45.56 0.41 5.27 16 LS Contribution 334.14 15.07 5.04 5.04 Total: -1.00 -32.41 334.14 -7.01 -39.41 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -6.44 Total: 5.99 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -1.19 Total: 1.84 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: 0.84 Total: -46.51 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.23 Total: -21.55 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.41 -7.01 -39.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001542371285.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.361 kcal (2) G-P(sol) polarization free energy of solvation -32.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds