Wall clock time and date at job start Tue Mar 31 2020 05:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46900 * 109.46914 * 2 1 4 4 C 1.46896 * 111.00197 * 73.27355 * 3 2 1 5 5 C 1.50706 * 109.46794 * 285.96975 * 4 3 2 6 6 H 1.07995 * 120.00112 * 358.05157 * 5 4 3 7 7 C 1.37877 * 119.99792 * 178.04754 * 5 4 3 8 8 N 1.31517 * 120.00265 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99929 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47009 * 90.00018 * 9 7 5 11 11 H 1.48498 * 109.47048 * 210.00148 * 9 7 5 12 12 H 1.48500 * 109.47119 * 330.00090 * 9 7 5 13 13 C 1.46904 * 111.00134 * 197.22711 * 3 2 1 14 14 H 1.09004 * 109.47454 * 186.04999 * 13 3 2 15 15 C 1.53001 * 109.46658 * 306.04713 * 13 3 2 16 16 C 1.50700 * 109.47116 * 66.04598 * 13 3 2 17 17 C 1.35171 * 125.60736 * 139.72649 * 16 13 3 18 18 C 1.40308 * 107.12303 * 179.84863 * 17 16 13 19 19 C 1.50702 * 126.64559 * 180.17376 * 18 17 16 20 20 C 1.36633 * 106.70370 * 0.40162 * 18 17 16 21 21 C 1.46472 * 125.99424 * 179.72994 * 20 18 17 22 22 O 1.21621 * 120.00335 * 359.97438 * 21 20 18 23 23 O 1.34904 * 119.99909 * 180.02562 * 21 20 18 24 24 O 1.33913 * 125.61185 * 320.02425 * 16 13 3 25 25 H 1.08999 * 109.46984 * 287.76540 * 1 2 3 26 26 H 1.09002 * 109.47439 * 47.77217 * 1 2 3 27 27 H 1.09005 * 109.47402 * 167.76656 * 1 2 3 28 28 H 1.09002 * 109.47043 * 240.00704 * 2 1 3 29 29 H 1.08992 * 109.47295 * 120.00118 * 2 1 3 30 30 H 1.08996 * 109.47148 * 45.96936 * 4 3 2 31 31 H 1.08996 * 109.47444 * 165.97233 * 4 3 2 32 32 H 0.96995 * 120.00178 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.47272 * 299.99788 * 15 13 3 34 34 H 1.08997 * 109.47719 * 60.00385 * 15 13 3 35 35 H 1.09000 * 109.46869 * 180.02562 * 15 13 3 36 36 H 1.08005 * 126.43705 * 359.95027 * 17 16 13 37 37 H 1.09004 * 109.47012 * 270.29821 * 19 18 17 38 38 H 1.08999 * 109.47311 * 30.29558 * 19 18 17 39 39 H 1.09000 * 109.47373 * 150.29606 * 19 18 17 40 40 H 0.96702 * 116.99932 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8229 2.0129 1.3133 5 6 0.3626 2.3330 1.5034 6 1 -0.3436 2.1227 0.7138 7 6 -0.0719 2.8942 2.6855 8 7 0.7879 3.1498 3.6473 9 14 -1.8822 3.2903 2.9214 10 1 -2.5726 2.1165 3.5136 11 1 -2.0193 4.4561 3.8310 12 1 -2.4936 3.6132 1.6072 13 6 3.4301 1.4448 -0.4062 14 1 3.7974 2.4650 -0.2947 15 6 4.2551 0.5064 0.4768 16 6 3.5565 1.0198 -1.8465 17 6 4.3635 1.5917 -2.7678 18 6 4.1778 0.8929 -3.9702 19 6 4.8662 1.1634 -5.2833 20 6 3.2482 -0.0770 -3.7213 21 6 2.7367 -1.0483 -4.6910 22 8 3.1424 -1.0345 -5.8375 23 8 1.8147 -1.9575 -4.3128 24 8 2.8837 0.0172 -2.4256 25 1 -0.3633 0.3136 0.9787 26 1 -0.3634 0.6907 -0.7610 27 1 -0.3634 -1.0044 -0.2178 28 1 1.8933 -0.5137 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 2.1497 1.3283 2.0960 31 1 2.4063 2.9320 1.3677 32 1 0.4822 3.5449 4.4787 33 1 4.1637 0.8138 1.5185 34 1 3.8880 -0.5138 0.3654 35 1 5.3018 0.5511 0.1757 36 1 5.0278 2.4282 -2.6079 37 1 4.2820 1.8818 -5.8586 38 1 5.8597 1.5705 -5.0956 39 1 4.9546 0.2338 -5.8455 40 1 1.5074 -2.5781 -4.9877 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001596299522.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:17 Heat of formation + Delta-G solvation = -70.732673 kcal Electronic energy + Delta-G solvation = -22722.085621 eV Core-core repulsion = 19310.944029 eV Total energy + Delta-G solvation = -3411.141592 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.72573 -39.96454 -37.72488 -36.32088 -34.09499 -33.10079 -31.88192 -29.80486 -28.60101 -27.90556 -26.52591 -24.50234 -22.50662 -22.42598 -21.31078 -20.04436 -18.99522 -18.35887 -17.44237 -16.66450 -16.50888 -15.23802 -15.05290 -14.93478 -14.31559 -14.22560 -13.90195 -13.54854 -13.36947 -13.20152 -12.98085 -12.71649 -12.37541 -12.29220 -12.00460 -11.84962 -11.71293 -11.33656 -11.16812 -10.96756 -10.94260 -10.76254 -10.68413 -10.43493 -10.17401 -9.63056 -9.48319 -9.09169 -8.49493 -8.40385 -7.39635 -6.04772 -4.03298 0.87039 2.32487 2.48516 2.85962 3.25882 3.30660 3.37526 3.41844 4.37239 4.55335 4.72059 4.87715 5.11173 5.29146 5.30792 5.38906 5.47155 5.57209 5.59811 5.67170 5.87597 5.88442 6.00611 6.04136 6.13424 6.18862 6.25171 6.39254 6.41731 6.44856 6.67138 6.91212 7.02527 7.11290 7.27769 7.35868 7.75081 7.79490 8.02251 8.10595 8.47130 9.02682 9.58765 11.06022 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.024133 B = 0.004444 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.947737 B = 6299.161168 C = 6823.152297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.059 3.941 3 N -0.529 5.529 4 C 0.193 3.807 5 C -0.505 4.505 6 H 0.075 0.925 7 C 0.054 3.946 8 N -0.900 5.900 9 Si 0.894 3.106 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.147 3.853 14 H 0.113 0.887 15 C -0.183 4.183 16 C 0.088 3.912 17 C -0.238 4.238 18 C -0.061 4.061 19 C -0.097 4.097 20 C -0.103 4.103 21 C 0.575 3.425 22 O -0.505 6.505 23 O -0.503 6.503 24 O -0.133 6.133 25 H 0.085 0.915 26 H 0.054 0.946 27 H 0.032 0.968 28 H 0.065 0.935 29 H 0.027 0.973 30 H 0.000 1.000 31 H 0.028 0.972 32 H 0.261 0.739 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.158 0.842 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.381 -6.956 -12.952 16.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.069 4.069 3 N -0.254 5.254 4 C 0.069 3.931 5 C -0.543 4.543 6 H 0.093 0.907 7 C -0.147 4.147 8 N -0.540 5.540 9 Si 0.722 3.278 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.197 1.197 13 C 0.037 3.963 14 H 0.130 0.870 15 C -0.241 4.241 16 C 0.034 3.966 17 C -0.257 4.257 18 C -0.063 4.063 19 C -0.153 4.153 20 C -0.152 4.152 21 C 0.421 3.579 22 O -0.396 6.396 23 O -0.314 6.314 24 O -0.028 6.028 25 H 0.103 0.897 26 H 0.073 0.927 27 H 0.051 0.949 28 H 0.083 0.917 29 H 0.045 0.955 30 H 0.018 0.982 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.176 0.824 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 7.115 -6.539 -12.981 16.183 hybrid contribution -0.610 -0.444 0.416 0.861 sum 6.506 -6.983 -12.565 15.779 Atomic orbital electron populations 1.22008 0.94924 0.98813 1.04387 1.22100 0.96912 0.89004 0.98891 1.62491 1.11732 1.17280 1.33871 1.19808 0.97940 0.93577 0.81811 1.21379 0.93040 1.39618 1.00291 0.90716 1.24980 0.97729 0.95932 0.96039 1.69949 1.34018 1.44179 1.05857 0.86550 0.85249 0.77887 0.78101 1.20737 1.21336 1.19743 1.20584 0.92223 0.99602 0.83901 0.86968 1.22499 0.99852 1.00456 1.01339 1.23287 0.90677 0.86604 0.96050 1.21400 1.07045 1.05499 0.91783 1.20553 0.95228 0.93306 0.97230 1.20465 0.99381 1.03422 0.92029 1.20332 1.06610 1.03840 0.84412 1.18880 0.76035 0.78182 0.84819 1.90933 1.58288 1.71604 1.18797 1.84724 1.55023 1.44442 1.47259 1.84298 1.53517 1.44709 1.20279 0.89676 0.92704 0.94941 0.91727 0.95506 0.98199 0.95441 0.92984 0.90507 0.92086 0.92367 0.82405 0.90538 0.91099 0.89871 0.72699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.48 37.15 0.31 -2.54 16 2 C 0.06 1.14 4.32 -3.83 -0.02 1.13 16 3 N -0.53 -10.91 4.42 -229.48 -1.01 -11.92 16 4 C 0.19 4.70 4.12 -4.98 -0.02 4.68 16 5 C -0.50 -13.45 7.10 -34.44 -0.24 -13.70 16 6 H 0.07 1.98 5.53 -52.49 -0.29 1.69 16 7 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 8 N -0.90 -25.82 13.29 55.43 0.74 -25.09 16 9 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 13 C 0.15 2.47 2.76 -68.86 -0.19 2.28 16 14 H 0.11 1.80 7.83 -51.93 -0.41 1.40 16 15 C -0.18 -2.76 8.50 37.16 0.32 -2.44 16 16 C 0.09 1.41 6.02 -35.40 -0.21 1.19 16 17 C -0.24 -3.28 10.72 -39.90 -0.43 -3.71 16 18 C -0.06 -0.84 6.20 -104.42 -0.65 -1.49 16 19 C -0.10 -1.06 9.81 36.01 0.35 -0.71 16 20 C -0.10 -1.57 7.18 -36.85 -0.26 -1.84 16 21 C 0.57 7.96 8.30 34.05 0.28 8.24 16 22 O -0.51 -7.33 15.53 -19.36 -0.30 -7.63 16 23 O -0.50 -5.78 13.44 -42.50 -0.57 -6.35 16 24 O -0.13 -2.24 7.78 4.76 0.04 -2.20 16 25 H 0.08 1.88 5.81 -51.93 -0.30 1.58 16 26 H 0.05 1.12 7.74 -51.93 -0.40 0.72 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 1.20 4.86 -51.93 -0.25 0.95 16 29 H 0.03 0.53 6.97 -51.93 -0.36 0.17 16 30 H 0.00 0.01 7.15 -51.93 -0.37 -0.37 16 31 H 0.03 0.71 7.77 -51.93 -0.40 0.30 16 32 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.08 1.25 7.12 -51.93 -0.37 0.88 16 34 H 0.06 0.93 6.72 -51.93 -0.35 0.58 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.16 1.76 8.06 -52.48 -0.42 1.34 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.96 6.45 -51.93 -0.33 0.63 16 40 H 0.41 2.40 9.11 45.56 0.42 2.82 16 LS Contribution 326.29 15.07 4.92 4.92 Total: -1.00 -30.96 326.29 -6.75 -37.71 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -4.68 Total: 1.94 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -0.85 Total: -7.52 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: -0.28 Total: -37.01 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.83 Total: -16.18 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.96 -6.75 -37.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596299522.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.024 kcal (2) G-P(sol) polarization free energy of solvation -30.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds