Wall clock time and date at job start Tue Mar 31 2020 05:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46901 * 109.47130 * 2 1 4 4 C 1.46903 * 110.99905 * 295.93450 * 3 2 1 5 5 C 1.50708 * 109.47223 * 295.33504 * 4 3 2 6 6 H 1.07998 * 119.99647 * 354.96463 * 5 4 3 7 7 C 1.37876 * 119.99988 * 174.95605 * 5 4 3 8 8 N 1.31509 * 120.00122 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99797 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47262 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47023 * 120.00519 * 9 7 5 12 12 H 1.48499 * 109.47523 * 240.00423 * 9 7 5 13 13 C 1.46894 * 111.00039 * 59.88523 * 3 2 1 14 14 H 1.08997 * 109.47603 * 296.04813 * 13 3 2 15 15 C 1.53001 * 109.47200 * 176.04546 * 13 3 2 16 16 C 1.50702 * 109.47066 * 56.05162 * 13 3 2 17 17 C 1.35169 * 125.60621 * 220.00113 * 16 13 3 18 18 C 1.40313 * 107.12427 * 179.97438 * 17 16 13 19 19 C 1.50697 * 126.64942 * 180.02562 * 18 17 16 20 20 C 1.36641 * 106.70130 * 359.97438 * 18 17 16 21 21 C 1.46473 * 125.99442 * 179.97438 * 20 18 17 22 22 O 1.21624 * 119.99793 * 359.97438 * 21 20 18 23 23 O 1.34892 * 119.99992 * 180.02562 * 21 20 18 24 24 O 1.33912 * 125.61232 * 40.23769 * 16 13 3 25 25 H 1.09003 * 109.46880 * 182.32252 * 1 2 3 26 26 H 1.09003 * 109.46955 * 302.31528 * 1 2 3 27 27 H 1.08995 * 109.47552 * 62.31732 * 1 2 3 28 28 H 1.09000 * 109.46864 * 240.00510 * 2 1 3 29 29 H 1.08994 * 109.47399 * 119.99856 * 2 1 3 30 30 H 1.08996 * 109.47458 * 55.33055 * 4 3 2 31 31 H 1.09003 * 109.47393 * 175.33850 * 4 3 2 32 32 H 0.97008 * 120.00091 * 179.97438 * 8 7 5 33 33 H 1.08994 * 109.47559 * 179.97438 * 15 13 3 34 34 H 1.08997 * 109.47061 * 300.00599 * 15 13 3 35 35 H 1.09006 * 109.46956 * 60.00346 * 15 13 3 36 36 H 1.07993 * 126.43959 * 359.93600 * 17 16 13 37 37 H 1.09003 * 109.47169 * 270.00118 * 19 18 17 38 38 H 1.09001 * 109.46863 * 29.99636 * 19 18 17 39 39 H 1.08998 * 109.47683 * 149.99843 * 19 18 17 40 40 H 0.96699 * 116.99894 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6296 2.0812 -1.2334 5 6 2.3060 1.4310 -2.4127 6 1 3.0224 0.6384 -2.2548 7 6 2.0101 1.8478 -3.6932 8 7 1.1380 2.8132 -3.8854 9 14 2.8480 1.0413 -5.1550 10 1 3.7791 -0.0106 -4.6736 11 1 1.8226 0.4282 -6.0370 12 1 3.6080 2.0648 -5.9167 13 6 1.5464 2.1107 1.1863 14 1 0.4595 2.1863 1.1564 15 6 2.1550 3.5143 1.2019 16 6 1.9644 1.3681 2.4293 17 6 1.2090 1.2012 3.5377 18 6 1.9720 0.4557 4.4492 19 6 1.5513 0.0189 5.8288 20 6 3.1698 0.2013 3.8430 21 6 4.2857 -0.5497 4.4227 22 8 4.1908 -1.0111 5.5441 23 8 5.4191 -0.7287 3.7135 24 8 3.1468 0.7690 2.6191 25 1 -0.3633 -1.0269 0.0416 26 1 -0.3633 0.5494 0.8685 27 1 -0.3634 0.4774 -0.9100 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 0.5483 2.0228 -1.3572 31 1 1.9324 3.1266 -1.1718 32 1 0.9301 3.1067 -4.7864 33 1 1.8036 4.0530 2.0819 34 1 3.2420 3.4387 1.2318 35 1 1.8527 4.0515 0.3029 36 1 0.2069 1.5725 3.6929 37 1 1.8318 0.7835 6.5532 38 1 0.4709 -0.1237 5.8510 39 1 2.0468 -0.9188 6.0800 40 1 6.1281 -1.2307 4.1381 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001596299523.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:19 Heat of formation + Delta-G solvation = -74.173447 kcal Electronic energy + Delta-G solvation = -22684.702200 eV Core-core repulsion = 19273.411404 eV Total energy + Delta-G solvation = -3411.290795 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.72926 -39.96052 -37.76836 -36.31518 -34.06283 -32.97849 -32.04578 -30.07868 -28.41745 -27.90817 -26.42147 -24.35021 -22.99516 -22.32812 -21.33894 -20.17406 -18.58136 -18.36707 -17.42991 -16.66996 -16.30627 -15.42415 -15.19971 -15.04573 -14.68141 -14.05061 -13.91339 -13.60674 -13.23030 -13.18903 -13.00926 -12.66650 -12.38064 -12.28598 -11.98928 -11.89080 -11.70850 -11.48397 -11.37752 -11.03737 -10.89807 -10.79276 -10.69234 -10.41905 -10.08695 -9.81542 -9.63628 -9.23101 -8.49085 -8.44751 -7.33012 -6.06704 -4.07017 0.86319 2.30109 2.49393 2.84428 3.27601 3.29260 3.37275 3.42459 4.36142 4.53603 4.70301 4.82913 5.10986 5.28974 5.34264 5.46831 5.50519 5.55469 5.57151 5.71303 5.74560 5.91064 5.94102 5.98877 6.02089 6.07889 6.22718 6.27989 6.36585 6.43678 6.58287 6.64498 6.84317 7.01809 7.25176 7.33653 7.74562 7.77040 8.00665 8.09593 8.46662 9.00836 9.57161 11.04069 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.023652 B = 0.004423 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.552386 B = 6329.565433 C = 6832.419759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.060 3.940 3 N -0.526 5.526 4 C 0.185 3.815 5 C -0.505 4.505 6 H 0.064 0.936 7 C 0.057 3.943 8 N -0.899 5.899 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.143 3.857 14 H 0.073 0.927 15 C -0.145 4.145 16 C 0.088 3.912 17 C -0.243 4.243 18 C -0.063 4.063 19 C -0.096 4.096 20 C -0.098 4.098 21 C 0.575 3.425 22 O -0.505 6.505 23 O -0.501 6.501 24 O -0.126 6.126 25 H 0.049 0.951 26 H 0.043 0.957 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.049 0.951 30 H 0.004 0.996 31 H 0.036 0.964 32 H 0.261 0.739 33 H 0.054 0.946 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.157 0.843 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.801 -3.631 16.035 16.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.069 4.069 3 N -0.251 5.251 4 C 0.061 3.939 5 C -0.543 4.543 6 H 0.082 0.918 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.724 3.276 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.210 1.210 13 C 0.034 3.966 14 H 0.090 0.910 15 C -0.202 4.202 16 C 0.033 3.967 17 C -0.263 4.263 18 C -0.066 4.066 19 C -0.152 4.152 20 C -0.148 4.148 21 C 0.421 3.579 22 O -0.396 6.396 23 O -0.312 6.312 24 O -0.020 6.020 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.088 0.912 28 H 0.106 0.894 29 H 0.068 0.932 30 H 0.022 0.978 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.174 0.826 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 1.173 -3.455 15.803 16.218 hybrid contribution -0.193 -0.659 -0.615 0.922 sum 0.980 -4.114 15.187 15.765 Atomic orbital electron populations 1.22391 0.99150 1.01158 1.01978 1.22009 0.92184 0.90979 1.01698 1.62512 1.58684 1.01807 1.02087 1.19911 0.95043 0.94524 0.84445 1.21161 1.23783 1.19495 0.89900 0.91773 1.24950 0.95294 0.95252 0.98966 1.69955 1.33754 1.28448 1.21676 0.86471 0.79351 0.79370 0.82435 1.19636 1.21159 1.21022 1.20418 0.97575 0.92826 0.85744 0.91002 1.21923 1.02186 0.93767 1.02365 1.23245 0.82651 0.93653 0.97194 1.21424 1.02690 1.08102 0.94039 1.20541 0.91552 0.96866 0.97603 1.20456 1.01625 1.02601 0.90561 1.20306 0.96467 1.10332 0.87742 1.18864 0.80554 0.76222 0.82240 1.90934 1.81363 1.48413 1.18938 1.84740 1.25735 1.70992 1.49762 1.84254 1.34329 1.53277 1.30094 0.93235 0.93790 0.91164 0.89434 0.93243 0.97834 0.94641 0.92983 0.92696 0.91433 0.90152 0.82580 0.90640 0.91113 0.89796 0.72683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.28 9.24 37.16 0.34 -2.94 16 2 C 0.06 1.16 5.55 -3.83 -0.02 1.13 16 3 N -0.53 -10.88 4.57 -229.48 -1.05 -11.93 16 4 C 0.19 4.50 4.32 -4.97 -0.02 4.48 16 5 C -0.50 -13.65 8.34 -34.44 -0.29 -13.93 16 6 H 0.06 1.76 7.23 -52.49 -0.38 1.38 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -25.73 13.29 55.43 0.74 -25.00 16 9 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 10 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 13 C 0.14 2.45 2.01 -68.87 -0.14 2.31 16 14 H 0.07 1.18 6.46 -51.93 -0.34 0.84 16 15 C -0.15 -2.31 8.96 37.16 0.33 -1.98 16 16 C 0.09 1.40 4.62 -35.40 -0.16 1.24 16 17 C -0.24 -3.32 10.72 -39.89 -0.43 -3.75 16 18 C -0.06 -0.87 6.20 -104.42 -0.65 -1.52 16 19 C -0.10 -1.04 9.81 36.00 0.35 -0.69 16 20 C -0.10 -1.52 7.18 -36.84 -0.26 -1.78 16 21 C 0.58 8.04 8.30 34.05 0.28 8.32 16 22 O -0.51 -7.32 15.53 -19.36 -0.30 -7.62 16 23 O -0.50 -5.94 13.44 -42.46 -0.57 -6.51 16 24 O -0.13 -2.19 10.19 4.77 0.05 -2.14 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.04 0.70 6.37 -51.93 -0.33 0.37 16 27 H 0.07 1.39 6.51 -51.93 -0.34 1.05 16 28 H 0.09 1.85 6.76 -51.93 -0.35 1.50 16 29 H 0.05 0.92 6.63 -51.93 -0.34 0.57 16 30 H 0.00 0.10 6.24 -51.93 -0.32 -0.22 16 31 H 0.04 0.90 5.88 -51.93 -0.31 0.60 16 32 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.08 1.37 6.23 -51.93 -0.32 1.05 16 36 H 0.16 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.98 6.45 -51.93 -0.33 0.64 16 40 H 0.41 2.51 9.11 45.56 0.42 2.93 16 LS Contribution 329.54 15.07 4.97 4.97 Total: -1.00 -31.05 329.54 -6.57 -37.62 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -4.62 Total: 2.03 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -0.76 Total: -7.66 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: -0.31 Total: -36.92 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.82 Total: -16.27 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.05 -6.57 -37.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596299523.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.556 kcal (2) G-P(sol) polarization free energy of solvation -31.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds