Wall clock time and date at job start Tue Mar 31 2020 06:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30011 * 127.33460 * 2 1 4 4 O 1.20659 * 112.30442 * 180.02562 * 3 2 1 5 5 C 1.33492 * 113.15354 * 359.71556 * 4 3 2 6 6 C 1.50696 * 126.83257 * 180.31076 * 5 4 3 7 7 C 1.37365 * 106.33968 * 0.45460 * 5 4 3 8 8 C 1.47401 * 128.56063 * 179.85715 * 7 5 4 9 9 O 1.21617 * 119.99704 * 269.66824 * 8 7 5 10 10 N 1.34773 * 120.00512 * 89.68078 * 8 7 5 11 11 C 1.46490 * 120.00384 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.47559 * 179.97438 * 11 10 8 13 13 H 1.09008 * 109.46613 * 54.99525 * 12 11 10 14 14 C 1.53001 * 109.47108 * 295.00069 * 12 11 10 15 15 C 1.52996 * 109.47530 * 174.99686 * 12 11 10 16 16 N 1.46498 * 109.47059 * 184.99929 * 15 12 11 17 17 C 1.36943 * 119.99752 * 179.72430 * 16 15 12 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 15 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 15 20 20 N 1.31611 * 120.00081 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99814 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47483 * 90.00178 * 21 19 17 23 23 H 1.48498 * 109.47011 * 210.00042 * 21 19 17 24 24 H 1.48502 * 109.47495 * 329.99664 * 21 19 17 25 25 H 1.09000 * 109.46762 * 269.95201 * 1 2 3 26 26 H 1.09001 * 109.47264 * 29.95614 * 1 2 3 27 27 H 1.09001 * 109.47078 * 149.95616 * 1 2 3 28 28 H 1.08998 * 109.47320 * 270.17418 * 6 5 4 29 29 H 1.09006 * 109.47032 * 30.17077 * 6 5 4 30 30 H 1.09000 * 109.47500 * 150.16944 * 6 5 4 31 31 H 0.97002 * 119.99300 * 359.97438 * 10 8 7 32 32 H 1.08998 * 109.47374 * 59.99359 * 11 10 8 33 33 H 1.09002 * 109.47263 * 299.99603 * 11 10 8 34 34 H 1.08995 * 109.46988 * 299.99895 * 14 12 11 35 35 H 1.09001 * 109.46786 * 59.99727 * 14 12 11 36 36 H 1.09001 * 109.47309 * 179.97438 * 14 12 11 37 37 H 1.09004 * 109.47066 * 65.00196 * 15 12 11 38 38 H 1.08994 * 109.46974 * 305.00344 * 15 12 11 39 39 H 0.97001 * 120.00384 * 0.02562 * 16 15 12 40 40 H 0.97008 * 120.00329 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7208 -0.0005 5 6 3.6494 -0.6007 0.0052 6 6 4.9711 -1.3245 0.0128 7 6 2.3991 -1.1696 -0.0007 8 6 2.0401 -2.5992 -0.0009 9 8 1.8916 -3.1886 -1.0543 10 7 1.8763 -3.2531 1.1661 11 6 1.5189 -4.6738 1.1658 12 6 1.3957 -5.1691 2.6082 13 1 0.6858 -4.5423 3.1481 14 6 2.7629 -5.0957 3.2911 15 6 0.9018 -6.6171 2.6099 16 7 0.6699 -7.0524 3.9893 17 6 0.2164 -8.3199 4.2403 18 1 0.0340 -9.0001 3.4214 19 6 -0.0089 -8.7305 5.5470 20 7 -0.4442 -9.9489 5.7882 21 14 0.3059 -7.5537 6.9631 22 1 -0.9319 -6.7864 7.2538 23 1 0.7048 -8.3246 8.1680 24 1 1.3952 -6.6144 6.5935 25 1 -0.3633 -0.0009 1.0277 26 1 -0.3634 0.8904 -0.5131 27 1 -0.3633 -0.8896 -0.5145 28 1 5.2952 -1.5002 -1.0130 29 1 5.7147 -0.7179 0.5298 30 1 4.8597 -2.2791 0.5272 31 1 1.9949 -2.7830 2.0062 32 1 2.2931 -5.2431 0.6514 33 1 0.5669 -4.8089 0.6524 34 1 3.4728 -5.7223 2.7512 35 1 3.1147 -4.0641 3.2900 36 1 2.6751 -5.4482 4.3189 37 1 1.6532 -7.2578 2.1482 38 1 -0.0287 -6.6842 2.0463 39 1 0.8334 -6.4413 4.7247 40 1 -0.6013 -10.2359 6.7014 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698739948.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:26 Heat of formation + Delta-G solvation = 23.284104 kcal Electronic energy + Delta-G solvation = -21630.107601 eV Core-core repulsion = 18255.335633 eV Total energy + Delta-G solvation = -3374.771968 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.18905 -39.83114 -37.07670 -34.88735 -34.57200 -33.93527 -32.51492 -30.60000 -29.13666 -28.50328 -26.86724 -25.90599 -24.14733 -22.06319 -21.06739 -20.52271 -20.00867 -18.32222 -18.09097 -17.46851 -16.57579 -16.24517 -15.59263 -14.92313 -14.57489 -14.28117 -14.10795 -13.87518 -13.71628 -13.56380 -13.52565 -13.23916 -13.08533 -12.80981 -12.63092 -12.52993 -12.27844 -11.51070 -11.44602 -11.10478 -10.83762 -10.75678 -10.69628 -10.36393 -10.21020 -10.13401 -9.72290 -9.61883 -9.27046 -8.94259 -7.27640 -5.80245 -3.16261 0.96294 1.58435 2.15786 2.49007 3.04507 3.32250 3.34967 3.41511 3.78429 3.90054 4.48204 4.54939 4.55910 4.77354 4.86005 4.94433 5.00542 5.05028 5.12951 5.15497 5.20978 5.31448 5.48634 5.50066 5.58462 5.66839 5.68533 5.77829 5.79801 5.99576 6.14327 6.24750 6.39000 6.59567 6.68386 7.21738 7.89032 7.90426 7.95898 8.38562 9.17272 9.89281 10.08628 11.38203 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.027739 B = 0.003118 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.179951 B = 8978.822128 C = 9008.401219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.056 3.944 3 N -0.356 5.356 4 O 0.096 5.904 5 C 0.020 3.980 6 C -0.080 4.080 7 C -0.253 4.253 8 C 0.597 3.403 9 O -0.524 6.524 10 N -0.713 5.713 11 C 0.126 3.874 12 C -0.115 4.115 13 H 0.077 0.923 14 C -0.144 4.144 15 C 0.165 3.835 16 N -0.754 5.754 17 C -0.245 4.245 18 H 0.091 0.909 19 C 0.004 3.996 20 N -0.934 5.934 21 Si 0.885 3.115 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.278 1.278 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.402 0.598 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.044 0.956 36 H 0.064 0.936 37 H 0.031 0.969 38 H 0.030 0.970 39 H 0.361 0.639 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.078 21.467 -10.468 25.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 N -0.063 5.063 4 O 0.034 5.966 5 C -0.044 4.044 6 C -0.137 4.137 7 C -0.261 4.261 8 C 0.381 3.619 9 O -0.400 6.400 10 N -0.364 5.364 11 C 0.002 3.998 12 C -0.134 4.134 13 H 0.095 0.905 14 C -0.202 4.202 15 C 0.037 3.963 16 N -0.400 5.400 17 C -0.375 4.375 18 H 0.108 0.892 19 C -0.191 4.191 20 N -0.582 5.582 21 Si 0.715 3.285 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.204 1.204 25 H 0.105 0.895 26 H 0.101 0.899 27 H 0.104 0.896 28 H 0.115 0.885 29 H 0.110 0.890 30 H 0.113 0.887 31 H 0.237 0.763 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.049 0.951 38 H 0.048 0.952 39 H 0.194 0.806 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.705 22.081 -11.267 26.273 hybrid contribution 0.095 0.188 1.549 1.563 sum 8.800 22.269 -9.718 25.841 Atomic orbital electron populations 1.20256 0.85039 1.04441 1.03972 1.24772 0.98641 0.86449 1.00747 1.73620 0.89118 1.23343 1.20256 1.84536 1.21518 1.22565 1.67953 1.24649 0.97406 0.83769 0.98549 1.20489 0.88971 0.99295 1.04955 1.21953 0.92903 0.95384 1.15823 1.16848 0.77138 0.83783 0.84141 1.90848 1.50039 1.67879 1.31256 1.46043 1.70270 1.12032 1.08079 1.21490 1.01526 0.79192 0.97565 1.21617 0.98394 0.99280 0.94124 0.90504 1.21827 0.96139 1.00366 1.01838 1.20547 0.97763 0.90050 0.87906 1.42680 1.81716 1.13958 1.01666 1.19064 1.36104 0.88527 0.93801 0.89150 1.24675 1.01283 0.96271 0.96916 1.69698 1.51794 1.17050 1.19616 0.86550 0.77967 0.80744 0.83216 1.21085 1.21687 1.20406 0.89465 0.89854 0.89590 0.88525 0.88983 0.88696 0.76287 0.90772 0.90771 0.92273 0.93711 0.91682 0.95091 0.95174 0.80633 0.93013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.49 36.01 0.38 -0.27 16 2 C 0.06 0.60 7.59 -79.77 -0.61 -0.01 16 3 N -0.36 -4.07 12.01 34.78 0.42 -3.65 16 4 O 0.10 0.98 11.06 18.65 0.21 1.18 16 5 C 0.02 0.18 7.55 -34.63 -0.26 -0.08 16 6 C -0.08 -0.43 10.33 36.00 0.37 -0.06 16 7 C -0.25 -2.72 6.24 -102.89 -0.64 -3.36 16 8 C 0.60 7.19 7.60 -12.53 -0.10 7.09 16 9 O -0.52 -8.27 17.11 5.26 0.09 -8.18 16 10 N -0.71 -7.33 5.28 -61.40 -0.32 -7.65 16 11 C 0.13 1.48 5.06 -4.05 -0.02 1.46 16 12 C -0.11 -1.52 2.46 -90.62 -0.22 -1.75 16 13 H 0.08 1.00 8.14 -51.92 -0.42 0.58 16 14 C -0.14 -1.80 8.94 37.16 0.33 -1.47 16 15 C 0.17 2.97 5.65 -4.04 -0.02 2.95 16 16 N -0.75 -17.19 5.13 -59.91 -0.31 -17.50 16 17 C -0.25 -6.83 10.47 -15.06 -0.16 -6.99 16 18 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 19 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 20 N -0.93 -29.11 13.97 55.49 0.78 -28.33 16 21 Si 0.88 21.61 27.74 -169.99 -4.71 16.89 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.28 -6.27 6.52 56.52 0.37 -5.91 16 25 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.50 8.11 -51.93 -0.42 0.08 16 31 H 0.40 3.38 7.64 -40.82 -0.31 3.07 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.04 0.43 7.18 -51.93 -0.37 0.06 16 36 H 0.06 0.96 7.18 -51.93 -0.37 0.58 16 37 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.36 7.94 4.71 -40.82 -0.19 7.75 16 40 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 341.68 15.07 5.15 5.15 Total: -1.00 -34.20 341.68 -5.66 -39.86 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -5.91 Total: 4.69 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -1.04 Total: -2.45 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: 0.56 Total: -57.14 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: 0.30 Total: -6.99 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.71 Total: 16.89 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.20 -5.66 -39.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698739948.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.145 kcal (2) G-P(sol) polarization free energy of solvation -34.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds