Wall clock time and date at job start Tue Mar 31 2020 06:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30016 * 127.33595 * 2 1 4 4 O 1.20663 * 112.30269 * 180.02562 * 3 2 1 5 5 C 1.33496 * 113.15374 * 359.71925 * 4 3 2 6 6 C 1.50696 * 126.82658 * 180.32777 * 5 4 3 7 7 C 1.37355 * 106.34293 * 0.44788 * 5 4 3 8 8 C 1.47396 * 128.56578 * 179.85397 * 7 5 4 9 9 O 1.21613 * 120.00072 * 269.67895 * 8 7 5 10 10 N 1.34773 * 119.99991 * 89.95092 * 8 7 5 11 11 C 1.46500 * 120.00431 * 179.72668 * 10 8 7 12 12 C 1.52999 * 109.47528 * 180.02562 * 11 10 8 13 13 H 1.08994 * 109.46962 * 305.00143 * 12 11 10 14 14 C 1.53001 * 109.47110 * 65.00091 * 12 11 10 15 15 C 1.53001 * 109.47200 * 184.99966 * 12 11 10 16 16 N 1.46498 * 109.46869 * 175.00321 * 15 12 11 17 17 C 1.36945 * 119.99558 * 180.02562 * 16 15 12 18 18 H 1.07998 * 120.00269 * 359.97438 * 17 16 15 19 19 C 1.38810 * 119.99475 * 179.97438 * 17 16 15 20 20 N 1.31622 * 120.00356 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99883 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47506 * 89.99471 * 21 19 17 23 23 H 1.48494 * 109.47353 * 210.00152 * 21 19 17 24 24 H 1.48508 * 109.46811 * 329.99828 * 21 19 17 25 25 H 1.09002 * 109.47240 * 269.95688 * 1 2 3 26 26 H 1.08998 * 109.47277 * 29.95777 * 1 2 3 27 27 H 1.08996 * 109.47185 * 149.95734 * 1 2 3 28 28 H 1.08994 * 109.47382 * 270.14330 * 6 5 4 29 29 H 1.09005 * 109.47258 * 30.14389 * 6 5 4 30 30 H 1.08996 * 109.47002 * 150.14281 * 6 5 4 31 31 H 0.97000 * 120.00112 * 359.73105 * 10 8 7 32 32 H 1.09009 * 109.46712 * 300.00517 * 11 10 8 33 33 H 1.08993 * 109.47029 * 59.99907 * 11 10 8 34 34 H 1.09007 * 109.47103 * 300.00000 * 14 12 11 35 35 H 1.09001 * 109.47510 * 59.99591 * 14 12 11 36 36 H 1.09001 * 109.47517 * 180.02562 * 14 12 11 37 37 H 1.09003 * 109.46780 * 294.99872 * 15 12 11 38 38 H 1.08999 * 109.47150 * 54.99722 * 15 12 11 39 39 H 0.96993 * 120.00308 * 359.97438 * 16 15 12 40 40 H 0.97000 * 119.99542 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7208 -0.0005 5 6 3.6494 -0.6008 0.0051 6 6 4.9712 -1.3246 0.0131 7 6 2.3992 -1.1696 -0.0006 8 6 2.0401 -2.5992 -0.0010 9 8 1.8916 -3.1886 -1.0543 10 7 1.8710 -3.2518 1.1660 11 6 1.5082 -4.6711 1.1658 12 6 1.3785 -5.1647 2.6082 13 1 2.3004 -4.9519 3.1492 14 6 0.2105 -4.4486 3.2892 15 6 1.1227 -6.6732 2.6099 16 7 1.1173 -7.1659 3.9896 17 6 0.9065 -8.4954 4.2409 18 1 0.7439 -9.1807 3.4222 19 6 0.9019 -8.9623 5.5482 20 7 1.1006 -8.1273 6.5460 21 14 0.6136 -10.7758 5.8912 22 1 1.9153 -11.4904 5.9033 23 1 -0.0485 -10.9308 7.2113 24 1 -0.2553 -11.3480 4.8314 25 1 -0.3634 -0.0008 1.0277 26 1 -0.3634 0.8903 -0.5132 27 1 -0.3633 -0.8896 -0.5145 28 1 5.2952 -1.5006 -1.0126 29 1 5.7146 -0.7177 0.5299 30 1 4.8597 -2.2789 0.5277 31 1 1.9894 -2.7817 2.0062 32 1 0.5569 -4.8029 0.6501 33 1 2.2814 -5.2436 0.6536 34 1 0.3927 -3.3739 3.2879 35 1 -0.7115 -4.6613 2.7481 36 1 0.1183 -4.7999 4.3169 37 1 0.1575 -6.8785 2.1470 38 1 1.9096 -7.1758 2.0476 39 1 1.2637 -6.5505 4.7249 40 1 1.0977 -8.4538 7.4594 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698739949.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:29 Heat of formation + Delta-G solvation = 18.837246 kcal Electronic energy + Delta-G solvation = -21549.654670 eV Core-core repulsion = 18174.689872 eV Total energy + Delta-G solvation = -3374.964798 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.13481 -39.75660 -36.91194 -34.83567 -34.42893 -33.87659 -32.47573 -30.11876 -29.08570 -28.43287 -26.71890 -25.62443 -24.12561 -22.40632 -21.01698 -20.39608 -19.86693 -18.18095 -18.02253 -17.06939 -16.50414 -16.18042 -15.49998 -14.75549 -14.60698 -14.29461 -13.88681 -13.82530 -13.64183 -13.50688 -13.47513 -13.08064 -13.02414 -12.77606 -12.62950 -12.36111 -12.10801 -11.39461 -11.10930 -10.95078 -10.78743 -10.64631 -10.52850 -10.32848 -10.15670 -10.02875 -9.71508 -9.66218 -9.19059 -8.90585 -6.95580 -5.79936 -3.08541 1.01825 1.63443 2.21912 2.54970 3.11774 3.42039 3.47502 3.48941 3.83601 3.95273 4.54581 4.56568 4.62032 4.89040 4.98186 5.00595 5.10053 5.15207 5.16991 5.25749 5.32138 5.35990 5.54496 5.54837 5.72396 5.74577 5.89617 5.89801 6.04470 6.17399 6.31401 6.37075 6.60380 6.72109 6.81377 7.29971 7.67871 7.93959 7.97370 8.39181 9.50564 10.07375 10.42002 11.43012 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.032673 B = 0.002862 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.768234 B = 9782.510917 C = 9910.157679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.056 3.944 3 N -0.357 5.357 4 O 0.095 5.905 5 C 0.020 3.980 6 C -0.080 4.080 7 C -0.253 4.253 8 C 0.597 3.403 9 O -0.526 6.526 10 N -0.711 5.711 11 C 0.125 3.875 12 C -0.110 4.110 13 H 0.077 0.923 14 C -0.142 4.142 15 C 0.161 3.839 16 N -0.731 5.731 17 C -0.240 4.240 18 H 0.071 0.929 19 C -0.014 4.014 20 N -0.934 5.934 21 Si 0.908 3.092 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.403 0.597 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.041 0.959 35 H 0.054 0.946 36 H 0.070 0.930 37 H 0.023 0.977 38 H 0.021 0.979 39 H 0.384 0.616 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.090 17.465 -11.973 21.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 N -0.064 5.064 4 O 0.034 5.966 5 C -0.043 4.043 6 C -0.137 4.137 7 C -0.260 4.260 8 C 0.381 3.619 9 O -0.403 6.403 10 N -0.363 5.363 11 C 0.002 3.998 12 C -0.129 4.129 13 H 0.095 0.905 14 C -0.200 4.200 15 C 0.033 3.967 16 N -0.375 5.375 17 C -0.371 4.371 18 H 0.089 0.911 19 C -0.210 4.210 20 N -0.583 5.583 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.207 1.207 25 H 0.105 0.895 26 H 0.101 0.899 27 H 0.104 0.896 28 H 0.114 0.886 29 H 0.110 0.890 30 H 0.114 0.886 31 H 0.238 0.762 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.040 0.960 38 H 0.039 0.961 39 H 0.218 0.782 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.748 18.147 -12.751 22.494 hybrid contribution -0.151 -1.340 0.928 1.637 sum 3.597 16.808 -11.823 20.862 Atomic orbital electron populations 1.20247 0.85077 1.04369 1.03970 1.24764 0.98617 0.86462 1.00774 1.73618 0.89130 1.23353 1.20284 1.84534 1.21505 1.22583 1.67979 1.24651 0.97430 0.83743 0.98524 1.20491 0.88966 0.99348 1.04920 1.21958 0.92894 0.95404 1.15767 1.16851 0.77155 0.83777 0.84167 1.90839 1.50254 1.67875 1.31294 1.46057 1.69886 1.12251 1.08072 1.21515 1.01220 0.79161 0.97909 1.21559 0.99909 0.97814 0.93668 0.90454 1.21801 0.97675 0.98230 1.02257 1.20571 0.98051 0.89156 0.88966 1.42335 1.86983 1.07092 1.01137 1.19237 1.40894 0.84989 0.91961 0.91134 1.24736 1.02808 0.97852 0.95580 1.69656 1.56828 1.33429 0.98388 0.86181 0.77726 0.84949 0.77287 1.21711 1.21775 1.20733 0.89451 0.89899 0.89638 0.88560 0.88967 0.88647 0.76209 0.90994 0.90977 0.93953 0.92727 0.91065 0.95951 0.96090 0.78205 0.93510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.49 36.00 0.38 -0.29 16 2 C 0.06 0.62 7.59 -79.76 -0.61 0.02 16 3 N -0.36 -4.22 12.01 34.78 0.42 -3.80 16 4 O 0.10 1.02 11.06 18.64 0.21 1.22 16 5 C 0.02 0.19 7.55 -34.63 -0.26 -0.07 16 6 C -0.08 -0.49 10.33 36.00 0.37 -0.11 16 7 C -0.25 -2.85 6.24 -102.89 -0.64 -3.49 16 8 C 0.60 7.54 7.60 -12.53 -0.10 7.45 16 9 O -0.53 -8.58 17.11 5.27 0.09 -8.49 16 10 N -0.71 -7.88 5.28 -61.39 -0.32 -8.20 16 11 C 0.13 1.59 5.06 -4.04 -0.02 1.57 16 12 C -0.11 -1.59 2.46 -90.62 -0.22 -1.82 16 13 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 14 C -0.14 -1.99 8.94 37.16 0.33 -1.66 16 15 C 0.16 3.06 5.65 -4.04 -0.02 3.04 16 16 N -0.73 -17.85 5.33 -59.91 -0.32 -18.17 16 17 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 18 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 20 N -0.93 -27.75 13.06 55.49 0.72 -27.03 16 21 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.58 8.11 -51.93 -0.42 0.16 16 31 H 0.40 3.75 7.64 -40.82 -0.31 3.44 16 32 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.04 0.48 7.18 -51.93 -0.37 0.10 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 1.18 7.18 -51.93 -0.37 0.81 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.38 9.76 6.85 -40.82 -0.28 9.48 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 344.79 15.07 5.20 5.20 Total: -1.00 -33.13 344.79 -6.02 -39.15 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -5.95 Total: 5.58 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -1.04 Total: -2.61 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: 0.50 Total: -57.19 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: 0.30 Total: -7.26 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.13 -6.02 -39.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698739949.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.989 kcal (2) G-P(sol) polarization free energy of solvation -33.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds