Wall clock time and date at job start Tue Mar 31 2020 06:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30016 * 127.33595 * 2 1 4 4 O 1.20663 * 112.30269 * 180.02562 * 3 2 1 5 5 C 1.33496 * 113.15374 * 359.71925 * 4 3 2 6 6 C 1.50696 * 126.82658 * 180.32777 * 5 4 3 7 7 C 1.37355 * 106.34293 * 0.44788 * 5 4 3 8 8 C 1.47396 * 128.56578 * 179.85397 * 7 5 4 9 9 O 1.21613 * 120.00072 * 269.67895 * 8 7 5 10 10 N 1.34773 * 119.99991 * 89.95092 * 8 7 5 11 11 C 1.46500 * 120.00431 * 179.72668 * 10 8 7 12 12 C 1.52999 * 109.47528 * 180.02562 * 11 10 8 13 13 H 1.08994 * 109.46962 * 305.00143 * 12 11 10 14 14 C 1.53001 * 109.47110 * 65.00091 * 12 11 10 15 15 C 1.53001 * 109.47200 * 184.99966 * 12 11 10 16 16 N 1.46498 * 109.46869 * 175.00321 * 15 12 11 17 17 C 1.36945 * 119.99558 * 180.02562 * 16 15 12 18 18 H 1.07998 * 120.00269 * 359.97438 * 17 16 15 19 19 C 1.38810 * 119.99475 * 179.97438 * 17 16 15 20 20 N 1.31622 * 120.00356 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99883 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47506 * 89.99471 * 21 19 17 23 23 H 1.48494 * 109.47353 * 210.00152 * 21 19 17 24 24 H 1.48508 * 109.46811 * 329.99828 * 21 19 17 25 25 H 1.09002 * 109.47240 * 269.95688 * 1 2 3 26 26 H 1.08998 * 109.47277 * 29.95777 * 1 2 3 27 27 H 1.08996 * 109.47185 * 149.95734 * 1 2 3 28 28 H 1.08994 * 109.47382 * 270.14330 * 6 5 4 29 29 H 1.09005 * 109.47258 * 30.14389 * 6 5 4 30 30 H 1.08996 * 109.47002 * 150.14281 * 6 5 4 31 31 H 0.97000 * 120.00112 * 359.73105 * 10 8 7 32 32 H 1.09009 * 109.46712 * 300.00517 * 11 10 8 33 33 H 1.08993 * 109.47029 * 59.99907 * 11 10 8 34 34 H 1.09007 * 109.47103 * 300.00000 * 14 12 11 35 35 H 1.09001 * 109.47510 * 59.99591 * 14 12 11 36 36 H 1.09001 * 109.47517 * 180.02562 * 14 12 11 37 37 H 1.09003 * 109.46780 * 294.99872 * 15 12 11 38 38 H 1.08999 * 109.47150 * 54.99722 * 15 12 11 39 39 H 0.96993 * 120.00308 * 359.97438 * 16 15 12 40 40 H 0.97000 * 119.99542 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7208 -0.0005 5 6 3.6494 -0.6008 0.0051 6 6 4.9712 -1.3246 0.0131 7 6 2.3992 -1.1696 -0.0006 8 6 2.0401 -2.5992 -0.0010 9 8 1.8916 -3.1886 -1.0543 10 7 1.8710 -3.2518 1.1660 11 6 1.5082 -4.6711 1.1658 12 6 1.3785 -5.1647 2.6082 13 1 2.3004 -4.9519 3.1492 14 6 0.2105 -4.4486 3.2892 15 6 1.1227 -6.6732 2.6099 16 7 1.1173 -7.1659 3.9896 17 6 0.9065 -8.4954 4.2409 18 1 0.7439 -9.1807 3.4222 19 6 0.9019 -8.9623 5.5482 20 7 1.1006 -8.1273 6.5460 21 14 0.6136 -10.7758 5.8912 22 1 1.9153 -11.4904 5.9033 23 1 -0.0485 -10.9308 7.2113 24 1 -0.2553 -11.3480 4.8314 25 1 -0.3634 -0.0008 1.0277 26 1 -0.3634 0.8903 -0.5132 27 1 -0.3633 -0.8896 -0.5145 28 1 5.2952 -1.5006 -1.0126 29 1 5.7146 -0.7177 0.5299 30 1 4.8597 -2.2789 0.5277 31 1 1.9894 -2.7817 2.0062 32 1 0.5569 -4.8029 0.6501 33 1 2.2814 -5.2436 0.6536 34 1 0.3927 -3.3739 3.2879 35 1 -0.7115 -4.6613 2.7481 36 1 0.1183 -4.7999 4.3169 37 1 0.1575 -6.8785 2.1470 38 1 1.9096 -7.1758 2.0476 39 1 1.2637 -6.5505 4.7249 40 1 1.0977 -8.4538 7.4594 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698739949.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:28 Heat of formation + Delta-G solvation = -3.783506 kcal Electronic energy + Delta-G solvation = -21550.635580 eV Core-core repulsion = 18174.689872 eV Total energy + Delta-G solvation = -3375.945707 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.94490 -40.80059 -38.25162 -35.98547 -35.63732 -34.65025 -34.00624 -31.88910 -29.81061 -29.13976 -27.80878 -27.20254 -25.34285 -24.01083 -21.94693 -21.45249 -20.91446 -19.38200 -18.89750 -18.71689 -17.43346 -17.31192 -16.52152 -16.50393 -15.68108 -15.49307 -15.41905 -14.87918 -14.69521 -14.40348 -14.25556 -14.06954 -14.01079 -13.60743 -13.56775 -13.56220 -13.42057 -12.94773 -12.80185 -12.19843 -12.16474 -12.14791 -11.99394 -11.76882 -11.65452 -11.34068 -10.97414 -10.92833 -10.45158 -10.21794 -8.97674 -7.94471 -5.22384 0.25298 0.81576 1.24590 1.49078 1.49990 1.58486 1.74943 2.22033 2.57749 3.07679 3.21938 3.39657 3.68371 3.75882 3.87928 3.97920 4.08299 4.22199 4.35809 4.47956 4.55147 4.56320 4.57694 4.62628 4.71506 4.74261 4.78981 4.95296 5.04535 5.05661 5.07824 5.14489 5.25230 5.38833 5.48075 5.51794 6.28373 6.36706 7.01616 7.15533 7.35515 8.11199 8.34703 9.28966 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.032673 B = 0.002862 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.768234 B = 9782.510917 C = 9910.157679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.052 3.948 3 N -0.378 5.378 4 O 0.091 5.909 5 C 0.037 3.963 6 C -0.082 4.082 7 C -0.279 4.279 8 C 0.607 3.393 9 O -0.566 6.566 10 N -0.698 5.698 11 C 0.137 3.863 12 C -0.094 4.094 13 H 0.080 0.920 14 C -0.137 4.137 15 C 0.156 3.844 16 N -0.742 5.742 17 C -0.246 4.246 18 H 0.074 0.926 19 C -0.074 4.074 20 N -0.968 5.968 21 Si 0.971 3.029 22 H -0.287 1.287 23 H -0.295 1.295 24 H -0.271 1.271 25 H 0.102 0.898 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.107 0.893 29 H 0.116 0.884 30 H 0.097 0.903 31 H 0.414 0.586 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.041 0.959 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.376 0.624 40 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.513 17.888 -12.527 22.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 N -0.087 5.087 4 O 0.032 5.968 5 C -0.027 4.027 6 C -0.139 4.139 7 C -0.287 4.287 8 C 0.392 3.608 9 O -0.445 6.445 10 N -0.349 5.349 11 C 0.013 3.987 12 C -0.113 4.113 13 H 0.099 0.901 14 C -0.194 4.194 15 C 0.029 3.971 16 N -0.385 5.385 17 C -0.378 4.378 18 H 0.092 0.908 19 C -0.266 4.266 20 N -0.619 5.619 21 Si 0.800 3.200 22 H -0.214 1.214 23 H -0.222 1.222 24 H -0.196 1.196 25 H 0.121 0.879 26 H 0.110 0.890 27 H 0.101 0.899 28 H 0.126 0.874 29 H 0.135 0.865 30 H 0.116 0.884 31 H 0.251 0.749 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.209 0.791 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 4.184 18.587 -13.322 23.248 hybrid contribution -0.254 -1.436 1.041 1.792 sum 3.930 17.151 -12.280 21.457 Atomic orbital electron populations 1.20357 0.83639 1.04690 1.05039 1.25174 0.99680 0.86192 0.99936 1.73612 0.89569 1.23919 1.21568 1.84515 1.21207 1.23083 1.68022 1.25231 0.98225 0.83267 0.95999 1.20719 0.87786 0.99409 1.05990 1.21865 0.93878 0.94659 1.18266 1.16903 0.76188 0.84098 0.83632 1.90821 1.52152 1.68864 1.32682 1.45874 1.69088 1.11517 1.08389 1.21266 1.01162 0.79985 0.96280 1.21331 1.00245 0.94746 0.94960 0.90140 1.21740 0.97437 1.00023 1.00240 1.20732 0.97887 0.92228 0.86207 1.42512 1.86791 1.06158 1.03051 1.19630 1.39506 0.86480 0.92134 0.90795 1.25518 1.03627 1.01869 0.95579 1.69800 1.58515 1.35116 0.98434 0.85174 0.77594 0.80284 0.76918 1.21422 1.22208 1.19584 0.87932 0.88956 0.89906 0.87446 0.86511 0.88399 0.74872 0.91210 0.91156 0.90846 0.92757 0.93935 0.96011 0.95957 0.79098 0.93997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.24 10.49 71.24 0.75 -0.49 16 2 C 0.05 1.10 7.59 45.16 0.34 1.44 16 3 N -0.38 -8.52 12.01 -44.77 -0.54 -9.06 16 4 O 0.09 1.81 11.06 76.96 0.85 2.67 16 5 C 0.04 0.63 7.55 25.48 0.19 0.83 16 6 C -0.08 -0.80 10.33 71.23 0.74 -0.06 16 7 C -0.28 -5.90 6.24 -18.75 -0.12 -6.02 16 8 C 0.61 14.51 7.60 86.66 0.66 15.17 16 9 O -0.57 -18.00 17.11 -4.07 -0.07 -18.07 16 10 N -0.70 -14.10 5.28 -466.40 -2.46 -16.56 16 11 C 0.14 3.25 5.06 86.38 0.44 3.69 16 12 C -0.09 -2.58 2.46 -10.79 -0.03 -2.60 16 13 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 14 C -0.14 -3.65 8.94 71.98 0.64 -3.00 16 15 C 0.16 5.85 5.65 86.38 0.49 6.34 16 16 N -0.74 -36.22 5.33 -343.45 -1.83 -38.05 16 17 C -0.25 -13.48 9.99 84.03 0.84 -12.64 16 18 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 19 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 20 N -0.97 -58.02 13.06 21.65 0.28 -57.74 16 21 Si 0.97 45.51 29.55 68.60 2.03 47.54 16 22 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 23 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 24 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 25 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.12 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.10 0.95 8.11 -2.39 -0.02 0.93 16 31 H 0.41 6.68 7.64 -92.71 -0.71 5.97 16 32 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.07 1.48 7.18 -2.38 -0.02 1.46 16 35 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.04 1.39 7.18 -2.39 -0.02 1.37 16 37 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.38 19.32 6.85 -92.71 -0.64 18.68 16 40 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -70.79 344.79 3.39 -67.41 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: -0.28 Total: 22.92 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: 5.41 Total: -1.05 kcal Atomic # 7 Polarization: -116.86 SS G_CDS: -4.55 Total: -121.41 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: 0.78 Total: -15.41 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -70.79 3.39 -67.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698739949.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.624 kcal (2) G-P(sol) polarization free energy of solvation -70.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds