Wall clock time and date at job start Tue Mar 31 2020 06:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29936 * 125.38450 * 2 1 4 4 C 1.36066 * 108.48275 * 180.18750 * 3 2 1 5 5 C 1.47415 * 126.44916 * 179.85782 * 4 3 2 6 6 O 1.21617 * 119.99738 * 179.68647 * 5 4 3 7 7 N 1.34773 * 120.00478 * 359.69851 * 5 4 3 8 8 C 1.46490 * 120.00384 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.47559 * 179.97438 * 8 7 5 10 10 H 1.09008 * 109.46613 * 54.99525 * 9 8 7 11 11 C 1.53001 * 109.47108 * 295.00069 * 9 8 7 12 12 C 1.52996 * 109.47530 * 174.99686 * 9 8 7 13 13 N 1.46498 * 109.47059 * 184.99929 * 12 9 8 14 14 C 1.36943 * 119.99752 * 179.72430 * 13 12 9 15 15 H 1.08002 * 119.99793 * 0.27665 * 14 13 12 16 16 C 1.38811 * 120.00012 * 180.27737 * 14 13 12 17 17 N 1.31624 * 119.99698 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00072 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47159 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47290 * 120.00044 * 18 16 14 21 21 H 1.48503 * 109.47163 * 240.00049 * 18 16 14 22 22 C 1.36093 * 107.09821 * 359.60259 * 4 3 2 23 23 C 1.50700 * 126.52590 * 180.20538 * 22 4 3 24 24 O 1.34055 * 125.37695 * 179.74772 * 2 1 3 25 25 H 1.08994 * 109.47239 * 180.27515 * 1 2 3 26 26 H 1.08996 * 109.46752 * 300.27592 * 1 2 3 27 27 H 1.08996 * 109.46754 * 60.27340 * 1 2 3 28 28 H 0.97002 * 119.99300 * 359.97438 * 7 5 4 29 29 H 1.08998 * 109.47374 * 59.99359 * 8 7 5 30 30 H 1.09002 * 109.47263 * 299.99603 * 8 7 5 31 31 H 1.09001 * 109.46786 * 59.99727 * 11 9 8 32 32 H 1.09001 * 109.47309 * 179.97438 * 11 9 8 33 33 H 1.08995 * 109.46988 * 299.99895 * 11 9 8 34 34 H 1.09004 * 109.47066 * 65.00196 * 12 9 8 35 35 H 1.08994 * 109.46974 * 305.00344 * 12 9 8 36 36 H 0.97001 * 120.00384 * 0.02562 * 13 12 9 37 37 H 0.96999 * 119.99739 * 180.02562 * 17 16 14 38 38 H 1.08999 * 109.47287 * 89.99443 * 23 22 4 39 39 H 1.08999 * 109.47118 * 210.00425 * 23 22 4 40 40 H 1.09003 * 109.46728 * 329.99393 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2594 1.0593 0.0000 4 6 3.5613 0.6638 -0.0042 5 6 4.7440 1.5437 -0.0087 6 8 5.8605 1.0616 -0.0064 7 7 4.5880 2.8824 -0.0149 8 6 5.7633 3.7568 -0.0187 9 6 5.3116 5.2186 -0.0263 10 1 4.6406 5.3958 0.8144 11 6 4.5791 5.5193 -1.3355 12 6 6.5338 6.1308 0.0955 13 7 6.0941 7.5237 0.2084 14 6 7.0192 8.5255 0.3347 15 1 8.0730 8.2891 0.3465 16 6 6.6025 9.8448 0.4474 17 7 5.3182 10.1328 0.4334 18 14 7.8643 11.2114 0.6189 19 1 9.2300 10.6285 0.6066 20 1 7.7220 12.1616 -0.5135 21 1 7.6441 11.9307 1.8993 22 6 3.5660 -0.6971 0.0022 23 6 4.7801 -1.5899 0.0051 24 8 2.2831 -1.0930 0.0048 25 1 -0.3633 -1.0276 0.0049 26 1 -0.3633 0.5181 0.8875 27 1 -0.3633 0.5096 -0.8924 28 1 3.6974 3.2668 -0.0169 29 1 6.3618 3.5572 -0.9076 30 1 6.3614 3.5656 0.8723 31 1 3.7084 4.8693 -1.4222 32 1 4.2569 6.5605 -1.3407 33 1 5.2499 5.3420 -2.1761 34 1 7.1608 6.0182 -0.7890 35 1 7.1046 5.8569 0.9827 36 1 5.1477 7.7360 0.1981 37 1 5.0270 11.0547 0.5118 38 1 5.0740 -1.8002 1.0334 39 1 4.5450 -2.5245 -0.5041 40 1 5.5994 -1.0906 -0.5121 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698776400.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:43 Heat of formation + Delta-G solvation = -19.655662 kcal Electronic energy + Delta-G solvation = -21327.268772 eV Core-core repulsion = 17950.634796 eV Total energy + Delta-G solvation = -3376.633976 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.71351 -39.58599 -36.82937 -35.19717 -34.33923 -33.33818 -32.42839 -30.45787 -29.99504 -27.23429 -26.10249 -25.15756 -23.44696 -22.39343 -21.45914 -20.57647 -19.81942 -18.07511 -17.34455 -16.97532 -16.05032 -15.96991 -15.36166 -14.71801 -14.48720 -14.30526 -14.23053 -13.81907 -13.59086 -13.56149 -13.09111 -13.07103 -12.94706 -12.64937 -12.61105 -12.29178 -12.01871 -11.49069 -11.05478 -11.01940 -10.89771 -10.68750 -10.54506 -10.39722 -10.16645 -9.93997 -9.65906 -9.17362 -8.88004 -8.85608 -6.89677 -5.74844 -3.03135 0.84423 1.75969 2.17247 3.07779 3.19691 3.45113 3.50864 3.53095 3.61787 4.31422 4.58384 4.62145 4.72516 4.97182 5.02063 5.06782 5.09653 5.17952 5.25475 5.32516 5.44104 5.58117 5.60079 5.73868 5.81229 5.86754 6.00420 6.01862 6.14734 6.29978 6.42851 6.49397 6.69218 6.80898 6.90160 7.16295 7.54767 7.73059 8.12443 8.44343 9.55574 10.13279 10.48087 11.48280 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.033798 B = 0.002764 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.255225 B =10128.789223 C =10792.922240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.191 3.809 3 N -0.458 5.458 4 C -0.073 4.073 5 C 0.600 3.400 6 O -0.539 6.539 7 N -0.705 5.705 8 C 0.126 3.874 9 C -0.111 4.111 10 H 0.077 0.923 11 C -0.142 4.142 12 C 0.161 3.839 13 N -0.731 5.731 14 C -0.237 4.237 15 H 0.071 0.929 16 C -0.016 4.016 17 N -0.934 5.934 18 Si 0.907 3.093 19 H -0.280 1.280 20 H -0.292 1.292 21 H -0.292 1.292 22 C 0.037 3.963 23 C -0.076 4.076 24 O -0.199 6.199 25 H 0.088 0.912 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.409 0.591 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.023 0.977 35 H 0.021 0.979 36 H 0.384 0.616 37 H 0.254 0.746 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.523 -24.997 -1.733 26.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.018 4.018 3 N -0.189 5.189 4 C -0.193 4.193 5 C 0.385 3.615 6 O -0.417 6.417 7 N -0.356 5.356 8 C 0.003 3.997 9 C -0.130 4.130 10 H 0.095 0.905 11 C -0.199 4.199 12 C 0.033 3.967 13 N -0.376 5.376 14 C -0.368 4.368 15 H 0.089 0.911 16 C -0.211 4.211 17 N -0.583 5.583 18 Si 0.739 3.261 19 H -0.205 1.205 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.019 4.019 23 C -0.132 4.132 24 O -0.086 6.086 25 H 0.107 0.893 26 H 0.118 0.882 27 H 0.118 0.882 28 H 0.245 0.755 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.040 0.960 35 H 0.039 0.961 36 H 0.218 0.782 37 H 0.064 0.936 38 H 0.110 0.890 39 H 0.098 0.902 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.778 -24.613 -1.719 26.188 hybrid contribution 0.021 0.490 0.137 0.509 sum -8.757 -24.123 -1.582 25.712 Atomic orbital electron populations 1.20300 0.80788 1.04841 1.05433 1.26227 0.96499 0.78218 1.00813 1.70730 1.00727 1.29973 1.17422 1.21537 0.92195 0.92317 1.13289 1.16681 0.86079 0.81990 0.76750 1.90778 1.24240 1.75290 1.51389 1.45865 1.11322 1.05160 1.73220 1.21489 0.86886 0.88783 1.02562 1.21558 0.99518 0.92606 0.99317 0.90454 1.21793 0.99204 1.02452 0.96480 1.20569 0.92829 0.85281 0.98016 1.42356 1.06716 0.99879 1.88615 1.19289 0.89270 0.86564 1.41713 0.91096 1.24742 0.96031 0.97272 1.03086 1.69672 1.12788 1.18111 1.57739 0.86106 0.80451 0.82363 0.77226 1.20550 1.21897 1.21897 1.23729 0.83832 0.94552 0.99782 1.20599 0.90237 0.97629 1.04722 1.84327 1.16417 1.38012 1.69883 0.89281 0.88220 0.88230 0.75483 0.91067 0.91067 0.93782 0.91117 0.92837 0.95957 0.96110 0.78180 0.93596 0.89001 0.90216 0.86837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.27 10.51 36.00 0.38 0.11 16 2 C 0.19 1.86 8.30 -13.08 -0.11 1.75 16 3 N -0.46 -5.65 11.06 -7.66 -0.08 -5.73 16 4 C -0.07 -0.96 6.99 -83.02 -0.58 -1.55 16 5 C 0.60 8.73 7.81 -12.53 -0.10 8.64 16 6 O -0.54 -8.73 14.80 5.26 0.08 -8.65 16 7 N -0.71 -9.74 5.28 -61.39 -0.32 -10.06 16 8 C 0.13 1.84 5.06 -4.05 -0.02 1.82 16 9 C -0.11 -1.80 2.46 -90.62 -0.22 -2.02 16 10 H 0.08 1.28 8.14 -51.92 -0.42 0.86 16 11 C -0.14 -2.23 8.94 37.16 0.33 -1.90 16 12 C 0.16 3.27 5.65 -4.04 -0.02 3.24 16 13 N -0.73 -18.62 5.33 -59.91 -0.32 -18.94 16 14 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 15 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 16 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 17 N -0.93 -28.43 13.06 55.49 0.72 -27.71 16 18 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 22 C 0.04 0.42 7.44 -35.08 -0.26 0.16 16 23 C -0.08 -0.63 9.88 36.01 0.36 -0.27 16 24 O -0.20 -2.05 10.73 6.50 0.07 -1.98 16 25 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.41 5.32 7.38 -40.82 -0.30 5.01 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.04 0.59 7.18 -51.93 -0.37 0.22 16 32 H 0.07 1.27 7.18 -51.93 -0.37 0.90 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.38 10.19 6.85 -40.82 -0.28 9.91 16 37 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.11 1.09 6.48 -51.93 -0.34 0.75 16 LS Contribution 340.45 15.07 5.13 5.13 Total: -1.00 -33.74 340.45 -6.10 -39.84 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -5.86 Total: 7.90 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -0.49 Total: 2.56 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: 0.00 Total: -62.44 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.15 Total: -10.62 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.74 -6.10 -39.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698776400.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.185 kcal (2) G-P(sol) polarization free energy of solvation -33.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds