Wall clock time and date at job start Tue Mar 31 2020 06:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29937 * 125.37660 * 2 1 4 4 C 1.36071 * 108.47675 * 180.02562 * 3 2 1 5 5 C 1.47421 * 126.44773 * 180.02562 * 4 3 2 6 6 O 1.21616 * 119.99747 * 179.97438 * 5 4 3 7 7 N 1.34768 * 120.00030 * 359.97438 * 5 4 3 8 8 C 1.46501 * 119.99838 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.47146 * 179.97438 * 8 7 5 10 10 H 1.09005 * 109.47128 * 304.99167 * 9 8 7 11 11 C 1.52993 * 109.47520 * 64.99447 * 9 8 7 12 12 C 1.53000 * 109.47450 * 185.00007 * 9 8 7 13 13 N 1.46500 * 109.47748 * 174.99931 * 12 9 8 14 14 C 1.36931 * 120.00231 * 179.97438 * 13 12 9 15 15 H 1.07993 * 120.00135 * 359.97438 * 14 13 12 16 16 C 1.38809 * 119.99895 * 180.02562 * 14 13 12 17 17 N 1.31623 * 120.00254 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00283 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47207 * 59.99034 * 18 16 14 20 20 H 1.48492 * 109.47403 * 179.97438 * 18 16 14 21 21 H 1.48512 * 109.46752 * 299.99578 * 18 16 14 22 22 C 1.36090 * 107.09864 * 0.02562 * 4 3 2 23 23 C 1.50705 * 126.52155 * 180.26060 * 22 4 3 24 24 O 1.34045 * 125.37915 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.46720 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46835 * 299.99674 * 1 2 3 27 27 H 1.08996 * 109.47039 * 59.99686 * 1 2 3 28 28 H 0.96998 * 120.00262 * 359.97438 * 7 5 4 29 29 H 1.09002 * 109.46978 * 299.99490 * 8 7 5 30 30 H 1.09004 * 109.47619 * 59.99557 * 8 7 5 31 31 H 1.09002 * 109.47588 * 300.00240 * 11 9 8 32 32 H 1.09002 * 109.47397 * 60.00184 * 11 9 8 33 33 H 1.09004 * 109.47759 * 180.02562 * 11 9 8 34 34 H 1.09004 * 109.46925 * 294.99808 * 12 9 8 35 35 H 1.09001 * 109.47028 * 54.99421 * 12 9 8 36 36 H 0.97003 * 119.99476 * 359.97438 * 13 12 9 37 37 H 0.96998 * 120.00234 * 180.02562 * 17 16 14 38 38 H 1.08996 * 109.46974 * 179.70964 * 23 22 4 39 39 H 1.09000 * 109.47181 * 299.71489 * 23 22 4 40 40 H 1.09001 * 109.46790 * 59.71066 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0595 0.0000 4 6 3.5612 0.6639 -0.0006 5 6 4.7440 1.5439 -0.0003 6 8 5.8605 1.0619 -0.0004 7 7 4.5878 2.8825 0.0002 8 6 5.7632 3.7571 -0.0001 9 6 5.3113 5.2188 -0.0001 10 1 4.6408 5.3918 -0.8420 11 6 4.5783 5.5261 1.3072 12 6 6.5335 6.1305 -0.1261 13 7 6.0940 7.5229 -0.2462 14 6 7.0191 8.5246 -0.3710 15 1 8.0729 8.2884 -0.3805 16 6 6.6026 9.8439 -0.4843 17 7 5.3184 10.1319 -0.4723 18 14 7.8646 11.2105 -0.6553 19 1 8.6767 10.9842 -1.8779 20 1 7.1679 12.5176 -0.7592 21 1 8.7529 11.2157 0.5349 22 6 3.5660 -0.6970 -0.0015 23 6 4.7802 -1.5897 0.0031 24 8 2.2831 -1.0929 -0.0005 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 3.6973 3.2670 -0.0001 29 1 6.3617 3.5615 0.8897 30 1 6.3612 3.5620 -0.8903 31 1 3.7075 4.8767 1.3969 32 1 5.2488 5.3532 2.1490 33 1 4.2560 6.5674 1.3070 34 1 7.1601 6.0225 0.7592 35 1 7.1047 5.8521 -1.0117 36 1 5.1475 7.7351 -0.2374 37 1 5.0273 11.0538 -0.5519 38 1 4.4642 -2.6328 0.0062 39 1 5.3785 -1.3939 -0.8867 40 1 5.3760 -1.3879 0.8932 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698776401.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:46 Heat of formation + Delta-G solvation = -19.668962 kcal Electronic energy + Delta-G solvation = -21325.584221 eV Core-core repulsion = 17948.949669 eV Total energy + Delta-G solvation = -3376.634552 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.71506 -39.56799 -36.81820 -35.19567 -34.32734 -33.34951 -32.41933 -30.46283 -29.99307 -27.22796 -26.10016 -25.15700 -23.44575 -22.38884 -21.46040 -20.55806 -19.81441 -18.06960 -17.34576 -16.97024 -16.04225 -15.96537 -15.35500 -14.71467 -14.45523 -14.29656 -14.23767 -13.79842 -13.61698 -13.54946 -13.07132 -13.05626 -12.98390 -12.66668 -12.61183 -12.28739 -12.00938 -11.48797 -11.04884 -11.01230 -10.87360 -10.67717 -10.54727 -10.40247 -10.21148 -9.97420 -9.64791 -9.17018 -8.87096 -8.84326 -6.89497 -5.74181 -3.02587 0.84788 1.76313 2.16991 3.08404 3.20425 3.46460 3.50493 3.51722 3.61983 4.31087 4.59153 4.62679 4.70191 4.97225 5.01270 5.06562 5.09716 5.20846 5.25877 5.32564 5.44493 5.57537 5.60366 5.70706 5.81268 5.86668 6.00827 6.01992 6.15025 6.30224 6.43240 6.49611 6.69530 6.81275 6.90504 7.16458 7.55585 7.72412 8.13357 8.44979 9.56029 10.13772 10.48660 11.48811 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.033828 B = 0.002764 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.516595 B =10129.491276 C =10794.447631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.191 3.809 3 N -0.458 5.458 4 C -0.074 4.074 5 C 0.599 3.401 6 O -0.538 6.538 7 N -0.706 5.706 8 C 0.126 3.874 9 C -0.111 4.111 10 H 0.077 0.923 11 C -0.142 4.142 12 C 0.161 3.839 13 N -0.731 5.731 14 C -0.239 4.239 15 H 0.070 0.930 16 C -0.015 4.015 17 N -0.935 5.935 18 Si 0.908 3.092 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C 0.037 3.963 23 C -0.066 4.066 24 O -0.198 6.198 25 H 0.088 0.912 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.409 0.591 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.022 0.978 35 H 0.021 0.979 36 H 0.384 0.616 37 H 0.255 0.745 38 H 0.077 0.923 39 H 0.100 0.900 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.589 -24.982 1.794 26.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.018 4.018 3 N -0.188 5.188 4 C -0.194 4.194 5 C 0.384 3.616 6 O -0.416 6.416 7 N -0.356 5.356 8 C 0.003 3.997 9 C -0.130 4.130 10 H 0.095 0.905 11 C -0.199 4.199 12 C 0.033 3.967 13 N -0.375 5.375 14 C -0.370 4.370 15 H 0.088 0.912 16 C -0.210 4.210 17 N -0.584 5.584 18 Si 0.739 3.261 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.020 4.020 23 C -0.123 4.123 24 O -0.086 6.086 25 H 0.107 0.893 26 H 0.118 0.882 27 H 0.118 0.882 28 H 0.245 0.755 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.040 0.960 35 H 0.039 0.961 36 H 0.218 0.782 37 H 0.065 0.935 38 H 0.096 0.904 39 H 0.118 0.882 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.857 -24.587 1.783 26.195 hybrid contribution 0.060 0.496 -0.112 0.512 sum -8.797 -24.091 1.670 25.701 Atomic orbital electron populations 1.20303 0.80787 1.04839 1.05432 1.26226 0.96499 0.78217 1.00846 1.70735 1.00730 1.29966 1.17403 1.21553 0.92204 0.92312 1.13289 1.16683 0.86087 0.81985 0.76838 1.90802 1.24180 1.75423 1.51202 1.45863 1.11301 1.05165 1.73304 1.21486 0.86893 0.88777 1.02542 1.21555 0.99513 0.92606 0.99318 0.90456 1.21793 0.99200 1.02437 0.96497 1.20570 0.92831 0.85303 0.97991 1.42335 1.06682 0.99919 1.88600 1.19195 0.89217 0.86583 1.42006 0.91204 1.24736 0.96021 0.97250 1.03040 1.69649 1.12827 1.18321 1.57569 0.86252 0.80354 0.81572 0.77919 1.21282 1.21713 1.21274 1.23716 0.83855 0.94564 0.99842 1.20453 0.89422 0.96755 1.05648 1.84328 1.16373 1.38003 1.69876 0.89283 0.88228 0.88225 0.75502 0.91081 0.91092 0.93782 0.92844 0.91121 0.95976 0.96117 0.78178 0.93486 0.90393 0.88190 0.88202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.27 10.51 36.01 0.38 0.11 16 2 C 0.19 1.85 8.30 -13.08 -0.11 1.74 16 3 N -0.46 -5.64 11.06 -7.65 -0.08 -5.73 16 4 C -0.07 -0.97 6.99 -83.02 -0.58 -1.55 16 5 C 0.60 8.75 7.81 -12.53 -0.10 8.65 16 6 O -0.54 -8.76 15.61 5.26 0.08 -8.68 16 7 N -0.71 -9.78 5.28 -61.38 -0.32 -10.10 16 8 C 0.13 1.85 5.06 -4.04 -0.02 1.83 16 9 C -0.11 -1.80 2.46 -90.62 -0.22 -2.02 16 10 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 11 C -0.14 -2.24 8.94 37.15 0.33 -1.91 16 12 C 0.16 3.27 5.65 -4.04 -0.02 3.25 16 13 N -0.73 -18.65 5.33 -59.91 -0.32 -18.97 16 14 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 15 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 16 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 17 N -0.93 -28.47 13.06 55.49 0.72 -27.75 16 18 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 C 0.04 0.41 7.44 -35.08 -0.26 0.15 16 23 C -0.07 -0.54 9.13 36.01 0.33 -0.22 16 24 O -0.20 -2.03 10.73 6.53 0.07 -1.96 16 25 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 26 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.41 5.33 7.38 -40.82 -0.30 5.03 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.04 0.60 7.18 -51.93 -0.37 0.22 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 1.28 7.18 -51.93 -0.37 0.90 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.38 10.21 6.85 -40.82 -0.28 9.93 16 37 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.10 0.83 8.08 -51.93 -0.42 0.42 16 40 H 0.10 0.83 8.07 -51.93 -0.42 0.41 16 LS Contribution 342.03 15.07 5.15 5.15 Total: -1.00 -33.81 342.03 -6.18 -39.99 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -5.94 Total: 7.82 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -0.52 Total: 2.59 kcal Atomic # 7 Polarization: -62.55 SS G_CDS: 0.00 Total: -62.55 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.15 Total: -10.64 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.81 -6.18 -39.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698776401.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.322 kcal (2) G-P(sol) polarization free energy of solvation -33.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds