Wall clock time and date at job start Tue Mar 31 2020 06:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30614 * 125.42382 * 2 1 4 4 C 1.33693 * 108.99660 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.27495 * 180.02562 * 4 3 2 6 6 C 1.36347 * 107.45003 * 0.02562 * 4 3 2 7 7 C 1.46720 * 126.64133 * 179.97438 * 6 4 3 8 8 O 1.21684 * 120.00208 * 0.02639 * 7 6 4 9 9 N 1.34778 * 119.99984 * 180.02562 * 7 6 4 10 10 C 1.46503 * 120.00111 * 179.97438 * 9 7 6 11 11 H 1.09005 * 109.46466 * 35.00387 * 10 9 7 12 12 C 1.53004 * 109.47163 * 275.00422 * 10 9 7 13 13 C 1.52991 * 109.46981 * 155.00092 * 10 9 7 14 14 N 1.46501 * 109.47555 * 305.00263 * 13 10 9 15 15 C 1.46492 * 119.99866 * 269.99924 * 14 13 10 16 16 C 1.36938 * 119.99788 * 90.00016 * 14 13 10 17 17 H 1.07998 * 120.00188 * 22.34034 * 16 14 13 18 18 C 1.38817 * 119.99823 * 202.34388 * 16 14 13 19 19 N 1.31621 * 119.99903 * 11.36236 * 18 16 14 20 20 Si 1.86791 * 119.99986 * 191.36428 * 18 16 14 21 21 H 1.48499 * 109.47193 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47133 * 119.99732 * 20 18 16 23 23 H 1.48495 * 109.47360 * 239.99813 * 20 18 16 24 24 O 1.33665 * 125.42258 * 180.02562 * 2 1 3 25 25 H 1.09003 * 109.46915 * 269.97383 * 1 2 3 26 26 H 1.08998 * 109.47645 * 29.96819 * 1 2 3 27 27 H 1.08993 * 109.47730 * 149.97323 * 1 2 3 28 28 H 1.09003 * 109.47181 * 269.97349 * 5 4 3 29 29 H 1.09005 * 109.47103 * 29.97759 * 5 4 3 30 30 H 1.08995 * 109.47053 * 149.97618 * 5 4 3 31 31 H 0.96992 * 119.99812 * 0.02562 * 9 7 6 32 32 H 1.09007 * 109.46969 * 60.00201 * 12 10 9 33 33 H 1.08996 * 109.46681 * 179.97438 * 12 10 9 34 34 H 1.08991 * 109.47142 * 299.99814 * 12 10 9 35 35 H 1.09004 * 109.47144 * 65.00145 * 13 10 9 36 36 H 1.08998 * 109.47259 * 185.00107 * 13 10 9 37 37 H 1.09007 * 109.47118 * 94.22120 * 15 14 13 38 38 H 1.08999 * 109.47454 * 214.21902 * 15 14 13 39 39 H 1.08999 * 109.47403 * 334.22376 * 15 14 13 40 40 H 0.96995 * 119.99937 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2640 1.0644 0.0000 4 6 3.5464 0.6863 -0.0006 5 6 4.7452 1.5995 -0.0002 6 6 3.5707 -0.6770 -0.0015 7 6 4.7634 -1.5314 -0.0029 8 8 5.8717 -1.0292 -0.0028 9 7 4.6315 -2.8728 -0.0043 10 6 5.8224 -3.7260 -0.0062 11 1 6.6085 -3.2538 0.5832 12 6 6.3090 -3.9192 -1.4439 13 6 5.4761 -5.0863 0.6022 14 7 4.8983 -4.8927 1.9345 15 6 5.7684 -4.8620 3.1127 16 6 3.5451 -4.7406 2.0784 17 1 2.8760 -5.1090 1.3149 18 6 3.0333 -4.1127 3.2057 19 7 3.8390 -3.4686 4.0232 20 14 1.2011 -4.1820 3.5625 21 1 0.5186 -4.9611 2.4983 22 1 0.9771 -4.8365 4.8767 23 1 0.6507 -2.8032 3.5961 24 8 2.2817 -1.0892 -0.0005 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3634 0.8902 -0.5133 27 1 -0.3634 -0.8897 -0.5142 28 1 5.0343 1.8200 -1.0278 29 1 4.4949 2.5275 0.5140 30 1 5.5735 1.1115 0.5134 31 1 3.7480 -3.2731 -0.0047 32 1 6.5558 -2.9499 -1.8773 33 1 7.1953 -4.5536 -1.4452 34 1 5.5230 -4.3912 -2.0332 35 1 4.7546 -5.5967 -0.0360 36 1 6.3805 -5.6893 0.6825 37 1 6.0270 -3.8292 3.3465 38 1 5.2477 -5.3070 3.9606 39 1 6.6778 -5.4266 2.9076 40 1 3.4815 -3.0302 4.8110 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699440528.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:27 Heat of formation + Delta-G solvation = 1.834029 kcal Electronic energy + Delta-G solvation = -23267.936716 eV Core-core repulsion = 19892.234603 eV Total energy + Delta-G solvation = -3375.702113 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.12140 -39.07965 -36.41508 -35.06752 -33.98890 -32.58414 -31.39025 -30.15432 -29.16796 -26.96303 -26.19169 -25.64022 -22.60619 -21.62939 -21.37223 -20.29784 -19.78280 -17.76677 -16.73271 -16.67824 -15.67397 -15.48321 -14.90965 -14.37242 -14.05173 -13.80484 -13.72909 -13.25121 -13.04162 -12.93081 -12.90321 -12.76806 -12.57088 -12.24228 -11.94788 -11.91256 -11.44535 -11.33070 -10.90199 -10.74296 -10.72899 -10.59951 -10.45357 -10.29245 -10.05878 -9.87424 -9.56115 -8.64410 -8.60543 -8.25447 -6.81994 -5.77929 -3.24203 1.18658 2.65154 2.73451 3.29983 3.37172 3.39290 3.58337 3.80561 4.11723 4.42916 4.96752 5.07417 5.29987 5.31761 5.34262 5.46097 5.53411 5.62452 5.76335 5.82117 5.87153 5.91598 5.94052 6.10805 6.12166 6.17534 6.22336 6.40563 6.46465 6.56405 6.71558 6.83203 7.12672 7.35878 7.67800 7.76915 7.79141 8.16002 8.32759 8.69967 9.16825 9.80575 10.30013 11.26244 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012506 B = 0.008485 C = 0.005931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.419663 B = 3299.235786 C = 4719.779232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.206 3.794 3 N -0.492 5.492 4 C 0.063 3.937 5 C -0.074 4.074 6 C -0.094 4.094 7 C 0.608 3.392 8 O -0.536 6.536 9 N -0.672 5.672 10 C 0.117 3.883 11 H 0.080 0.920 12 C -0.160 4.160 13 C 0.141 3.859 14 N -0.599 5.599 15 C 0.164 3.836 16 C -0.258 4.258 17 H 0.067 0.933 18 C 0.008 3.992 19 N -0.898 5.898 20 Si 0.896 3.104 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.291 1.291 24 O -0.180 6.180 25 H 0.095 0.905 26 H 0.101 0.899 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.408 0.592 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.049 0.951 36 H 0.055 0.945 37 H 0.028 0.972 38 H 0.044 0.956 39 H -0.003 1.003 40 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.193 3.525 -9.608 10.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.001 3.999 3 N -0.223 5.223 4 C -0.061 4.061 5 C -0.132 4.132 6 C -0.149 4.149 7 C 0.393 3.607 8 O -0.416 6.416 9 N -0.320 5.320 10 C 0.009 3.991 11 H 0.099 0.901 12 C -0.219 4.219 13 C 0.013 3.987 14 N -0.321 5.321 15 C 0.019 3.981 16 C -0.388 4.388 17 H 0.085 0.915 18 C -0.191 4.191 19 N -0.542 5.542 20 Si 0.726 3.274 21 H -0.202 1.202 22 H -0.216 1.216 23 H -0.218 1.218 24 O -0.065 6.065 25 H 0.114 0.886 26 H 0.119 0.881 27 H 0.109 0.891 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.114 0.886 31 H 0.245 0.755 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.046 0.954 38 H 0.063 0.937 39 H 0.015 0.985 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.712 4.422 -9.410 10.537 hybrid contribution -1.315 -0.739 0.496 1.588 sum -3.028 3.683 -8.914 10.109 Atomic orbital electron populations 1.20310 0.81283 1.05059 1.05013 1.26379 0.96582 0.78912 0.98041 1.70248 1.01703 1.30048 1.20330 1.21940 0.93273 0.91399 0.99526 1.20305 0.92547 0.97214 1.03090 1.23122 0.82502 0.95155 1.14119 1.16251 0.85000 0.82200 0.77237 1.90769 1.23694 1.74185 1.52951 1.45663 1.11172 1.04351 1.70781 1.21959 0.87554 0.94316 0.95263 0.90147 1.22163 1.00842 1.01581 0.97317 1.21204 0.97236 0.92376 0.87885 1.43906 1.03925 1.84426 0.99815 1.20800 0.89890 0.98400 0.88988 1.19110 0.81946 1.31845 1.05895 0.91548 1.24998 0.97325 0.97691 0.99084 1.70077 1.33160 1.35949 1.15028 0.86315 0.85693 0.77271 0.78131 1.20180 1.21578 1.21781 1.84487 1.16309 1.36934 1.68817 0.88648 0.88069 0.89080 0.90574 0.90965 0.88632 0.75520 0.92825 0.91957 0.92922 0.93257 0.92674 0.95402 0.93679 0.98490 0.93811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.64 10.51 36.00 0.38 -0.26 16 2 C 0.21 3.40 8.32 -12.80 -0.11 3.30 16 3 N -0.49 -8.78 11.26 -7.07 -0.08 -8.86 16 4 C 0.06 1.17 7.16 -82.46 -0.59 0.58 16 5 C -0.07 -1.17 9.87 36.01 0.36 -0.82 16 6 C -0.09 -1.88 7.18 -36.84 -0.26 -2.14 16 7 C 0.61 12.79 7.75 -12.83 -0.10 12.69 16 8 O -0.54 -11.83 14.46 5.20 0.08 -11.75 16 9 N -0.67 -13.48 4.48 -55.10 -0.25 -13.72 16 10 C 0.12 2.17 2.88 -67.93 -0.20 1.97 16 11 H 0.08 1.69 7.58 -51.93 -0.39 1.30 16 12 C -0.16 -2.37 9.48 37.16 0.35 -2.02 16 13 C 0.14 2.69 5.36 -4.05 -0.02 2.67 16 14 N -0.60 -14.22 2.82 -181.13 -0.51 -14.73 16 15 C 0.16 3.98 9.01 59.84 0.54 4.52 16 16 C -0.26 -6.62 8.02 -15.06 -0.12 -6.74 16 17 H 0.07 1.65 7.84 -52.49 -0.41 1.24 16 18 C 0.01 0.22 5.13 -17.43 -0.09 0.14 16 19 N -0.90 -25.74 10.59 55.49 0.59 -25.15 16 20 Si 0.90 21.21 29.57 -169.99 -5.03 16.19 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 24 O -0.18 -3.42 10.57 4.44 0.05 -3.38 16 25 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.10 1.64 6.47 -51.93 -0.34 1.31 16 31 H 0.41 8.32 7.20 -40.82 -0.29 8.02 16 32 H 0.05 0.84 8.14 -51.92 -0.42 0.41 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.89 8.03 -51.93 -0.42 0.47 16 36 H 0.05 0.95 7.86 -51.93 -0.41 0.54 16 37 H 0.03 0.75 7.42 -51.93 -0.39 0.36 16 38 H 0.04 1.18 7.19 -51.93 -0.37 0.80 16 39 H 0.00 -0.07 7.84 -51.93 -0.41 -0.48 16 40 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 336.61 15.07 5.07 5.07 Total: -1.00 -31.58 336.61 -5.89 -37.47 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -5.94 Total: 4.98 kcal Atomic # 6 Polarization: 13.74 SS G_CDS: 0.14 Total: 13.88 kcal Atomic # 7 Polarization: -62.21 SS G_CDS: -0.25 Total: -62.46 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: 0.12 Total: -15.13 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.58 -5.89 -37.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699440528.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.304 kcal (2) G-P(sol) polarization free energy of solvation -31.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds