Wall clock time and date at job start Tue Mar 31 2020 05:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35450 * 126.77923 * 2 1 4 4 C 1.41374 * 103.98674 * 180.13561 * 3 2 1 5 5 C 1.50701 * 126.80454 * 179.88752 * 4 3 2 6 6 C 1.52997 * 109.47184 * 124.71127 * 5 4 3 7 7 C 1.50701 * 109.47184 * 180.02562 * 6 5 4 8 8 O 1.21286 * 119.99889 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00006 * 179.72637 * 7 6 5 10 10 C 1.46498 * 119.99824 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.46844 * 180.02562 * 10 9 7 12 12 N 1.46508 * 109.46842 * 180.02562 * 11 10 9 13 13 C 1.46495 * 119.99735 * 269.99592 * 12 11 10 14 14 C 1.36936 * 119.99845 * 89.99908 * 12 11 10 15 15 H 1.07998 * 120.00413 * 22.34261 * 14 12 11 16 16 C 1.38814 * 119.99380 * 202.33687 * 14 12 11 17 17 N 1.31619 * 120.00410 * 11.35923 * 16 14 12 18 18 Si 1.86808 * 119.99768 * 191.35475 * 16 14 12 19 19 H 1.48501 * 109.46899 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46843 * 120.00376 * 18 16 14 21 21 H 1.48500 * 109.46895 * 240.00486 * 18 16 14 22 22 N 1.30175 * 106.39743 * 359.62861 * 4 3 2 23 23 O 1.20922 * 111.60329 * 0.23839 * 22 4 3 24 24 H 1.08999 * 109.47549 * 180.29568 * 1 2 3 25 25 H 1.08999 * 109.47507 * 300.29921 * 1 2 3 26 26 H 1.09008 * 109.47002 * 60.29854 * 1 2 3 27 27 H 1.08004 * 128.00595 * 0.02562 * 3 2 1 28 28 H 1.09007 * 109.46806 * 4.71558 * 5 4 3 29 29 H 1.09001 * 109.47096 * 244.71608 * 5 4 3 30 30 H 1.09007 * 109.46898 * 60.00486 * 6 5 4 31 31 H 1.09001 * 109.47497 * 300.00236 * 6 5 4 32 32 H 0.96999 * 119.99645 * 359.97438 * 9 7 6 33 33 H 1.09004 * 109.47347 * 299.99545 * 10 9 7 34 34 H 1.08997 * 109.47340 * 60.00294 * 10 9 7 35 35 H 1.09002 * 109.46896 * 299.99347 * 11 10 9 36 36 H 1.08995 * 109.47619 * 59.99501 * 11 10 9 37 37 H 1.09001 * 109.47221 * 94.21005 * 13 12 11 38 38 H 1.09002 * 109.47285 * 214.21067 * 13 12 11 39 39 H 1.09003 * 109.47345 * 334.21192 * 13 12 11 40 40 H 0.97001 * 120.00279 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6213 0.5372 -0.0032 5 6 4.9211 1.2999 -0.0070 6 6 5.7798 0.8500 1.1767 7 6 7.0793 1.6131 1.1733 8 8 7.2970 2.4362 0.3094 9 7 7.9971 1.3853 2.1336 10 6 9.2601 2.1276 2.1306 11 6 10.1162 1.6820 3.3178 12 7 11.3791 2.4248 3.3151 13 6 12.5391 1.8947 2.5943 14 6 11.4751 3.6144 3.9864 15 1 10.7897 3.8375 4.7907 16 6 12.4536 4.5335 3.6332 17 7 13.1403 4.3697 2.5224 18 14 12.7956 6.0032 4.7346 19 1 11.8951 5.9577 5.9145 20 1 14.2088 5.9628 5.1890 21 1 12.5552 7.2569 3.9758 22 7 3.4763 -0.7564 0.0033 23 8 2.3095 -1.0737 0.0052 24 1 -0.3634 -1.0276 0.0053 25 1 -0.3634 0.5185 0.8873 26 1 -0.3633 0.5092 -0.8927 27 1 2.0345 2.1271 0.0004 28 1 4.7163 2.3672 0.0776 29 1 5.4541 1.1048 -0.9376 30 1 5.9846 -0.2173 1.0920 31 1 5.2468 1.0451 2.1072 32 1 7.8209 0.7305 2.8272 33 1 9.7958 1.9295 1.2022 34 1 9.0544 3.1950 2.2108 35 1 9.5808 1.8799 4.2464 36 1 10.3218 0.6147 3.2373 37 1 12.5714 2.3233 1.5926 38 1 13.4510 2.1562 3.1311 39 1 12.4579 0.8100 2.5229 40 1 13.8238 5.0121 2.2754 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753063787.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:22 Heat of formation + Delta-G solvation = 34.767063 kcal Electronic energy + Delta-G solvation = -20931.226100 eV Core-core repulsion = 17556.952071 eV Total energy + Delta-G solvation = -3374.274029 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.15319 -39.43869 -36.14960 -35.43195 -34.09474 -33.82726 -31.78563 -31.16852 -28.27877 -28.11400 -25.91454 -25.37642 -23.31370 -22.88812 -20.64653 -20.29814 -19.69117 -17.88464 -17.55159 -16.87057 -16.59521 -15.67642 -15.51279 -14.84079 -14.67652 -14.32294 -13.97566 -13.77079 -13.67673 -13.38399 -13.23096 -12.92474 -12.50706 -12.39483 -12.33438 -12.20908 -11.69780 -11.19899 -11.07999 -10.87847 -10.84406 -10.59646 -10.27447 -10.24747 -9.97761 -9.90994 -9.63391 -9.51611 -8.63277 -8.55584 -6.82297 -5.74622 -3.21890 1.20282 1.98407 2.84322 2.89924 3.36789 3.43133 3.45957 3.48374 3.98222 4.18006 4.49672 4.71206 4.76584 4.86338 4.94951 4.97560 5.01940 5.20799 5.34719 5.40443 5.44116 5.48769 5.64576 5.74055 5.81241 5.88907 5.97518 5.99289 6.28373 6.69857 6.73408 6.74831 6.99043 7.36912 7.72020 7.80137 7.82422 8.05311 8.36658 8.52199 9.20817 9.82896 10.31091 11.30495 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.038581 B = 0.002443 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.564611 B =11456.849828 C =11744.489287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.036 4.036 3 C -0.232 4.232 4 C 0.025 3.975 5 C -0.026 4.026 6 C -0.135 4.135 7 C 0.507 3.493 8 O -0.544 6.544 9 N -0.725 5.725 10 C 0.094 3.906 11 C 0.144 3.856 12 N -0.597 5.597 13 C 0.162 3.838 14 C -0.259 4.259 15 H 0.070 0.930 16 C 0.002 3.998 17 N -0.906 5.906 18 Si 0.907 3.093 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.289 1.289 22 N -0.364 5.364 23 O 0.097 5.903 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.171 0.829 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.395 0.605 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.048 0.952 36 H 0.042 0.958 37 H 0.029 0.971 38 H 0.047 0.953 39 H -0.002 1.002 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.996 -10.026 -3.121 26.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.100 4.100 3 C -0.253 4.253 4 C -0.134 4.134 5 C -0.065 4.065 6 C -0.176 4.176 7 C 0.292 3.708 8 O -0.422 6.422 9 N -0.376 5.376 10 C -0.032 4.032 11 C 0.015 3.985 12 N -0.320 5.320 13 C 0.018 3.982 14 C -0.388 4.388 15 H 0.088 0.912 16 C -0.196 4.196 17 N -0.551 5.551 18 Si 0.737 3.263 19 H -0.203 1.203 20 H -0.216 1.216 21 H -0.216 1.216 22 N -0.069 5.069 23 O 0.031 5.969 24 H 0.101 0.899 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.189 0.811 28 H 0.113 0.887 29 H 0.110 0.890 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.228 0.772 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.048 0.952 38 H 0.066 0.934 39 H 0.016 0.984 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -22.770 -10.354 -3.788 25.299 hybrid contribution -0.175 1.414 0.734 1.602 sum -22.945 -8.940 -3.054 24.814 Atomic orbital electron populations 1.20334 0.84078 1.04636 1.04102 1.24515 0.96394 0.86306 1.02784 1.22462 0.91366 1.01114 1.10374 1.23658 0.97498 0.89999 1.02216 1.19745 0.88231 0.98968 0.99513 1.21612 0.94190 1.01626 1.00193 1.20513 0.85258 0.83247 0.81775 1.90718 1.79191 1.34989 1.37300 1.46206 1.19057 1.43082 1.29255 1.22517 0.82150 0.96811 1.01690 1.20998 0.87858 0.94748 0.94877 1.43938 1.05123 1.22820 1.60075 1.20848 0.89623 0.90950 0.96805 1.19262 1.15833 0.93363 1.10374 0.91175 1.25083 1.00176 0.97851 0.96538 1.70079 1.25927 1.36837 1.22207 0.86146 0.77799 0.82493 0.79866 1.20287 1.21564 1.21633 1.73838 0.96759 1.16400 1.19904 1.84831 1.11361 1.33187 1.67557 0.89926 0.89165 0.89203 0.81117 0.88669 0.88963 0.88599 0.88961 0.77153 0.92230 0.91336 0.93344 0.93980 0.95222 0.93420 0.98383 0.93666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.26 10.45 36.00 0.38 0.12 16 2 C -0.04 -0.28 7.49 -35.30 -0.26 -0.55 16 3 C -0.23 -2.01 11.05 -39.38 -0.44 -2.45 16 4 C 0.02 0.28 6.59 -82.10 -0.54 -0.27 16 5 C -0.03 -0.30 5.10 -27.88 -0.14 -0.44 16 6 C -0.14 -1.54 5.67 -27.88 -0.16 -1.70 16 7 C 0.51 7.92 7.83 -10.99 -0.09 7.84 16 8 O -0.54 -10.90 15.98 5.55 0.09 -10.81 16 9 N -0.72 -11.04 5.56 -60.29 -0.33 -11.37 16 10 C 0.09 1.86 6.00 -4.04 -0.02 1.83 16 11 C 0.14 2.87 5.82 -4.04 -0.02 2.84 16 12 N -0.60 -15.08 2.93 -181.11 -0.53 -15.61 16 13 C 0.16 4.04 9.01 59.84 0.54 4.58 16 14 C -0.26 -7.13 9.67 -15.06 -0.15 -7.28 16 15 H 0.07 1.88 7.84 -52.49 -0.41 1.47 16 16 C 0.00 0.06 5.13 -17.43 -0.09 -0.03 16 17 N -0.91 -26.75 10.59 55.49 0.59 -26.16 16 18 Si 0.91 22.02 29.57 -169.99 -5.03 17.00 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 N -0.36 -4.43 12.06 33.42 0.40 -4.03 16 23 O 0.10 1.02 11.20 17.17 0.19 1.21 16 24 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 25 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.09 0.20 8.14 -51.92 -0.42 -0.22 16 27 H 0.17 1.08 8.06 -52.48 -0.42 0.66 16 28 H 0.09 1.05 8.09 -51.93 -0.42 0.63 16 29 H 0.09 1.15 8.10 -51.93 -0.42 0.73 16 30 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.40 4.63 8.47 -40.82 -0.35 4.28 16 33 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 35 H 0.05 0.92 8.03 -51.93 -0.42 0.50 16 36 H 0.04 0.75 7.86 -51.93 -0.41 0.34 16 37 H 0.03 0.80 7.42 -51.93 -0.39 0.42 16 38 H 0.05 1.27 7.19 -51.93 -0.37 0.89 16 39 H 0.00 -0.05 7.85 -51.93 -0.41 -0.46 16 40 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 343.23 15.07 5.17 5.17 Total: -1.00 -34.21 343.23 -6.55 -40.76 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -6.11 Total: -0.66 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -0.99 Total: 4.50 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: 0.13 Total: -57.17 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.28 Total: -9.60 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.21 -6.55 -40.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753063787.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.528 kcal (2) G-P(sol) polarization free energy of solvation -34.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds