Wall clock time and date at job start Tue Mar 31 2020 05:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47419 * 2 1 4 4 H 1.08994 * 109.47243 * 174.07750 * 3 2 1 5 5 C 1.50702 * 109.46790 * 54.08443 * 3 2 1 6 6 H 1.08007 * 119.99659 * 240.00326 * 5 3 2 7 7 C 1.37871 * 120.00540 * 59.99764 * 5 3 2 8 8 N 1.31515 * 119.99787 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00357 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47359 * 59.99861 * 9 7 5 11 11 H 1.48494 * 109.46966 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46805 * 299.99991 * 9 7 5 13 13 N 1.46892 * 109.47234 * 294.08522 * 3 2 1 14 14 C 1.46910 * 110.99802 * 275.33098 * 13 3 2 15 15 C 1.50697 * 109.46901 * 176.40656 * 14 13 3 16 16 C 1.39009 * 120.85153 * 90.00470 * 15 14 13 17 17 O 1.35543 * 120.47469 * 359.97438 * 16 15 14 18 18 C 1.42898 * 117.00157 * 179.97438 * 17 16 15 19 19 N 1.32963 * 119.05237 * 179.97438 * 16 15 14 20 20 C 1.31760 * 120.86340 * 359.97438 * 19 16 15 21 21 N 1.31761 * 121.87255 * 0.28236 * 20 19 16 22 22 C 1.32974 * 120.85788 * 359.43347 * 21 20 19 23 23 O 1.35543 * 120.46897 * 180.25430 * 22 21 20 24 24 C 1.42900 * 117.00343 * 0.29883 * 23 22 21 25 25 H 1.08993 * 109.47136 * 178.59301 * 1 2 3 26 26 H 1.09000 * 109.47225 * 298.59880 * 1 2 3 27 27 H 1.09001 * 109.47089 * 58.59408 * 1 2 3 28 28 H 1.09006 * 109.47511 * 240.00079 * 2 1 3 29 29 H 1.09002 * 109.47255 * 119.99987 * 2 1 3 30 30 H 0.97002 * 120.00202 * 180.02562 * 8 7 5 31 31 H 1.00897 * 111.00698 * 39.28548 * 13 3 2 32 32 H 1.09002 * 109.46736 * 56.40656 * 14 13 3 33 33 H 1.08996 * 109.47061 * 296.40557 * 14 13 3 34 34 H 1.08998 * 109.47408 * 300.00261 * 18 17 16 35 35 H 1.08998 * 109.46598 * 60.00249 * 18 17 16 36 36 H 1.09003 * 109.47019 * 180.02562 * 18 17 16 37 37 H 1.08000 * 119.06193 * 180.02562 * 20 19 16 38 38 H 1.08999 * 109.47040 * 179.97438 * 24 23 22 39 39 H 1.09000 * 109.46871 * 299.99714 * 24 23 22 40 40 H 1.08996 * 109.46701 * 59.99918 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1248 1.4443 0.1060 5 6 1.4217 2.1939 1.1507 6 1 0.8148 3.0670 0.9616 7 6 1.6306 1.7667 2.4448 8 7 2.3699 0.7037 2.6751 9 14 0.8635 2.6977 3.8711 10 1 -0.6144 2.6947 3.7266 11 1 1.2377 2.0409 5.1493 12 1 1.3580 4.0979 3.8713 13 7 1.6704 2.0926 -1.2643 14 6 2.6570 1.8024 -2.3135 15 6 2.2003 2.4106 -3.6145 16 6 2.5649 3.7060 -3.9626 17 8 3.3403 4.4479 -3.1346 18 6 3.6709 5.7695 -3.5662 19 7 2.1423 4.2070 -5.1195 20 6 1.3887 3.4924 -5.9304 21 7 1.0181 2.2634 -5.6335 22 6 1.4048 1.6900 -4.4978 23 8 1.0232 0.4233 -4.2026 24 6 0.2056 -0.2484 -5.1630 25 1 -0.3633 -1.0273 -0.0252 26 1 -0.3634 0.4919 0.9023 27 1 -0.3633 0.5355 -0.8771 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.5166 0.4029 3.5856 31 1 0.7435 1.8192 -1.5541 32 1 2.7551 0.7232 -2.4315 33 1 3.6211 2.2264 -2.0329 34 1 4.2150 5.7183 -4.5093 35 1 2.7561 6.3456 -3.7053 36 1 4.2940 6.2523 -2.8134 37 1 1.0620 3.9281 -6.8631 38 1 -0.0270 -1.2511 -4.8043 39 1 -0.7194 0.3101 -5.3068 40 1 0.7399 -0.3167 -6.1106 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183444.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:34 Heat of formation + Delta-G solvation = -22.653401 kcal Electronic energy + Delta-G solvation = -22806.381015 eV Core-core repulsion = 19429.617048 eV Total energy + Delta-G solvation = -3376.763967 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.31375 -39.04193 -37.69888 -36.52382 -33.46156 -32.53103 -31.52915 -29.83173 -27.96160 -26.95102 -26.56792 -24.96703 -23.15686 -23.07826 -22.00318 -19.21670 -19.10941 -18.42942 -16.47129 -16.42447 -16.19045 -15.62429 -15.47122 -14.84354 -14.63003 -14.09610 -13.98095 -13.89474 -13.67619 -13.04864 -12.78944 -12.32769 -12.17196 -11.93697 -11.83330 -11.77557 -11.53441 -11.28080 -10.91049 -10.78335 -10.48634 -10.39407 -9.91965 -9.76723 -9.57390 -9.49947 -9.42077 -8.91951 -8.58541 -8.26957 -7.08972 -5.90114 -3.91006 1.05214 1.28755 2.65099 3.38621 3.41345 3.42546 3.46210 3.81557 4.08750 4.18362 4.50767 4.96111 5.11115 5.23268 5.24905 5.32620 5.36388 5.41375 5.47795 5.51999 5.60999 5.73364 5.87101 6.32412 6.42163 6.45668 6.49091 6.66751 6.88172 7.01274 7.08493 7.27254 7.37419 7.37614 7.58903 7.78682 7.96642 8.07716 8.36777 8.64072 8.71159 9.14069 9.71961 11.16954 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.017551 B = 0.005434 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.998683 B = 5151.457870 C = 6299.399792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.144 4.144 3 C 0.217 3.783 4 H 0.033 0.967 5 C -0.485 4.485 6 H 0.060 0.940 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.674 5.674 14 C 0.121 3.879 15 C -0.212 4.212 16 C 0.398 3.602 17 O -0.278 6.278 18 C 0.039 3.961 19 N -0.597 5.597 20 C 0.358 3.642 21 N -0.597 5.597 22 C 0.382 3.618 23 O -0.289 6.289 24 C 0.040 3.960 25 H 0.020 0.980 26 H 0.064 0.936 27 H 0.028 0.972 28 H 0.013 0.987 29 H 0.091 0.909 30 H 0.259 0.741 31 H 0.324 0.676 32 H 0.036 0.964 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.099 0.901 37 H 0.199 0.801 38 H 0.099 0.901 39 H 0.061 0.939 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.771 2.711 -16.833 17.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.183 4.183 3 C 0.109 3.891 4 H 0.051 0.949 5 C -0.524 4.524 6 H 0.078 0.922 7 C -0.143 4.143 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.305 5.305 14 C -0.009 4.009 15 C -0.218 4.218 16 C 0.214 3.786 17 O -0.181 6.181 18 C -0.056 4.056 19 N -0.331 5.331 20 C 0.069 3.931 21 N -0.331 5.331 22 C 0.198 3.802 23 O -0.193 6.193 24 C -0.055 4.055 25 H 0.040 0.960 26 H 0.083 0.917 27 H 0.047 0.953 28 H 0.031 0.969 29 H 0.109 0.891 30 H 0.068 0.932 31 H 0.142 0.858 32 H 0.054 0.946 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.118 0.882 37 H 0.216 0.784 38 H 0.117 0.883 39 H 0.080 0.920 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.493 3.334 -16.733 17.069 hybrid contribution -0.548 -0.650 0.896 1.235 sum -1.041 2.684 -15.838 16.097 Atomic orbital electron populations 1.21536 0.97784 0.97823 1.01093 1.22083 0.94965 1.01132 1.00167 1.19193 0.96099 0.88631 0.85172 0.94870 1.21018 1.30292 1.11376 0.89731 0.92223 1.24891 0.95645 0.95196 0.98588 1.69879 1.39347 1.24173 1.20277 0.86648 0.79584 0.80047 0.81611 1.20482 1.21558 1.20405 1.60979 1.03527 1.62999 1.02995 1.20434 0.97354 0.96691 0.86441 1.19796 1.07001 0.93742 1.01291 1.19500 0.85880 0.87526 0.85722 1.86384 1.62355 1.27423 1.41905 1.22944 1.01100 0.80549 1.01021 1.68119 1.19678 1.39499 1.05846 1.24210 0.87350 0.84786 0.96733 1.68096 1.30029 1.15049 1.19934 1.19584 0.87596 0.85120 0.87895 1.86314 1.65299 1.22099 1.45597 1.22938 0.94138 0.96529 0.91932 0.96040 0.91695 0.95269 0.96880 0.89083 0.93162 0.85769 0.94643 0.90380 0.92387 0.92072 0.88224 0.78420 0.88303 0.92003 0.92218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.76 9.39 37.16 0.35 -2.41 16 2 C -0.14 -3.45 5.50 -26.73 -0.15 -3.60 16 3 C 0.22 5.49 2.33 -68.87 -0.16 5.33 16 4 H 0.03 0.93 7.85 -51.93 -0.41 0.52 16 5 C -0.49 -13.39 7.35 -34.44 -0.25 -13.64 16 6 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 7 C 0.06 1.58 5.22 -17.82 -0.09 1.49 16 8 N -0.90 -25.57 11.39 55.43 0.63 -24.94 16 9 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 N -0.67 -15.05 6.24 -109.22 -0.68 -15.73 16 14 C 0.12 2.38 5.25 -4.97 -0.03 2.35 16 15 C -0.21 -3.70 5.42 -104.05 -0.56 -4.26 16 16 C 0.40 6.56 7.50 -16.78 -0.13 6.43 16 17 O -0.28 -4.55 9.66 -18.32 -0.18 -4.73 16 18 C 0.04 0.46 10.41 101.05 1.05 1.51 16 19 N -0.60 -8.53 9.38 -14.70 -0.14 -8.67 16 20 C 0.36 4.45 12.28 -92.21 -1.13 3.32 16 21 N -0.60 -8.37 9.38 -14.70 -0.14 -8.51 16 22 C 0.38 6.11 7.50 -16.77 -0.13 5.98 16 23 O -0.29 -4.45 9.66 -18.32 -0.18 -4.63 16 24 C 0.04 0.44 10.41 101.05 1.05 1.49 16 25 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 1.56 7.04 -51.93 -0.37 1.20 16 27 H 0.03 0.60 6.42 -51.93 -0.33 0.26 16 28 H 0.01 0.29 7.27 -51.93 -0.38 -0.09 16 29 H 0.09 2.43 6.25 -51.93 -0.32 2.10 16 30 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.32 7.16 6.54 -39.29 -0.26 6.90 16 32 H 0.04 0.70 6.75 -51.93 -0.35 0.35 16 33 H 0.08 1.57 7.61 -51.93 -0.40 1.18 16 34 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 35 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 36 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.20 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 40 H 0.06 0.60 8.12 -51.93 -0.42 0.17 16 LS Contribution 331.94 15.07 5.00 5.00 Total: -1.00 -30.71 331.94 -6.61 -37.32 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -5.73 Total: 4.25 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -0.18 Total: 3.99 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: -0.33 Total: -57.85 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -0.35 Total: -9.35 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.71 -6.61 -37.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183444.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.669 kcal (2) G-P(sol) polarization free energy of solvation -30.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds