Wall clock time and date at job start Tue Mar 31 2020 05:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42900 * 109.47191 * 2 1 4 4 C 1.42905 * 114.00074 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.46610 * 329.99409 * 4 3 2 6 6 C 1.52997 * 109.47264 * 89.99687 * 4 3 2 7 7 C 1.50697 * 109.46996 * 210.00118 * 4 3 2 8 8 O 1.21296 * 119.99825 * 354.99266 * 7 4 3 9 9 N 1.34778 * 119.99902 * 174.99831 * 7 4 3 10 10 C 1.39479 * 119.99717 * 179.97438 * 9 7 4 11 11 C 1.36106 * 126.21839 * 359.68942 * 10 9 7 12 12 C 1.39755 * 107.82765 * 179.90711 * 11 10 9 13 13 C 1.50703 * 125.83728 * 180.14037 * 12 11 10 14 14 N 1.30849 * 108.32492 * 0.36076 * 12 11 10 15 15 N 1.35257 * 126.21391 * 180.02562 * 10 9 7 16 16 C 1.46499 * 126.04916 * 359.95960 * 15 10 9 17 17 C 1.50699 * 109.47516 * 90.00023 * 16 15 10 18 18 H 1.08004 * 119.99137 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00594 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00072 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99750 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47146 * 90.00147 * 21 19 17 23 23 H 1.48501 * 109.47048 * 210.00234 * 21 19 17 24 24 H 1.48506 * 109.47277 * 329.99858 * 21 19 17 25 25 H 1.08996 * 109.47076 * 60.00588 * 1 2 3 26 26 H 1.09005 * 109.47393 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47014 * 299.99934 * 1 2 3 28 28 H 1.09004 * 109.47542 * 239.99540 * 2 1 3 29 29 H 1.09003 * 109.47563 * 120.00137 * 2 1 3 30 30 H 1.09002 * 109.47153 * 179.97438 * 6 4 3 31 31 H 1.09001 * 109.46832 * 60.00108 * 6 4 3 32 32 H 1.09004 * 109.47261 * 300.00089 * 6 4 3 33 33 H 0.96996 * 120.00226 * 0.02562 * 9 7 4 34 34 H 1.08004 * 126.08392 * 0.02562 * 11 10 9 35 35 H 1.08990 * 109.47338 * 270.23804 * 13 12 11 36 36 H 1.09000 * 109.46855 * 30.23809 * 13 12 11 37 37 H 1.09001 * 109.47031 * 150.23417 * 13 12 11 38 38 H 1.08997 * 109.47217 * 210.00697 * 16 15 10 39 39 H 1.09003 * 109.47144 * 330.00385 * 16 15 10 40 40 H 0.97001 * 119.99638 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8635 0.6016 0.5130 6 6 3.9387 1.5005 -1.4433 7 6 3.8348 2.7263 0.7099 8 8 2.9863 3.5047 1.0912 9 7 5.1387 2.9937 0.9214 10 6 5.5125 4.1659 1.5784 11 6 4.6715 5.1257 2.0517 12 6 5.4510 6.1251 2.6405 13 6 4.9309 7.3787 3.2956 14 7 6.7099 5.7886 2.5215 15 7 6.7769 4.5582 1.8554 16 6 8.0002 3.8258 1.5187 17 6 8.4824 4.2527 0.1563 18 1 7.9328 4.9957 -0.4026 19 6 9.6251 3.6949 -0.3766 20 7 10.0462 4.0679 -1.5654 21 14 10.5752 2.4094 0.5899 22 1 10.0586 1.0576 0.2566 23 1 12.0155 2.4896 0.2374 24 1 10.4069 2.6590 2.0441 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 5.0253 1.5870 -1.4437 31 1 3.5060 2.3591 -1.9568 32 1 3.6466 0.5847 -1.9571 33 1 5.8172 2.3714 0.6160 34 1 3.5935 5.1156 1.9859 35 1 4.8516 8.1713 2.5517 36 1 3.9481 7.1835 3.7246 37 1 5.6167 7.6878 4.0843 38 1 8.7689 4.0421 2.2605 39 1 7.7927 2.7558 1.5118 40 1 10.8499 3.6751 -1.9404 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068218855.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:14 Heat of formation + Delta-G solvation = -5.603718 kcal Electronic energy + Delta-G solvation = -22223.977828 eV Core-core repulsion = 18847.953190 eV Total energy + Delta-G solvation = -3376.024638 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.97453 -39.59662 -37.80360 -34.81322 -33.78411 -32.63643 -32.13304 -30.37259 -29.47257 -28.20724 -26.32378 -24.76089 -23.00549 -22.49361 -21.28310 -19.82179 -19.28654 -17.28853 -17.18133 -17.04676 -16.27042 -15.86225 -15.35843 -15.05318 -14.43564 -14.33965 -13.89632 -13.43560 -13.33360 -13.13369 -12.73512 -12.72704 -12.59604 -12.37756 -12.33058 -12.14239 -11.89852 -11.81858 -11.58567 -11.23867 -11.15454 -10.85580 -10.49044 -10.24512 -10.07835 -9.80791 -9.76251 -9.38454 -8.88668 -7.96700 -7.49807 -6.35522 -4.40043 2.19679 2.49285 3.03464 3.04225 3.14770 3.15803 3.43826 3.55170 3.84615 4.11960 4.50196 4.69747 4.76368 4.90592 4.90729 5.01757 5.11965 5.29541 5.32907 5.52506 5.57866 5.60564 5.68615 5.91195 6.02097 6.02628 6.02886 6.12549 6.20698 6.29543 6.35761 6.62584 6.73780 6.91502 7.18105 7.43571 7.52831 7.76829 8.16351 8.29303 8.56060 8.71216 9.19056 10.76666 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013053 B = 0.005493 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.572384 B = 5096.477339 C = 6773.061315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.357 6.357 4 C 0.080 3.920 5 H 0.089 0.911 6 C -0.174 4.174 7 C 0.519 3.481 8 O -0.492 6.492 9 N -0.639 5.639 10 C 0.306 3.694 11 C -0.292 4.292 12 C 0.055 3.945 13 C -0.063 4.063 14 N -0.282 5.282 15 N -0.344 5.344 16 C 0.230 3.770 17 C -0.546 4.546 18 H 0.082 0.918 19 C 0.081 3.919 20 N -0.883 5.883 21 Si 0.871 3.129 22 H -0.271 1.271 23 H -0.278 1.278 24 H -0.263 1.263 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.414 0.586 34 H 0.163 0.837 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.034 0.966 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.500 -9.359 3.665 16.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.275 6.275 4 C 0.018 3.982 5 H 0.107 0.893 6 C -0.232 4.232 7 C 0.304 3.696 8 O -0.363 6.363 9 N -0.288 5.288 10 C 0.084 3.916 11 C -0.324 4.324 12 C -0.110 4.110 13 C -0.122 4.122 14 N -0.107 5.107 15 N -0.129 5.129 16 C 0.111 3.889 17 C -0.584 4.584 18 H 0.100 0.900 19 C -0.124 4.124 20 N -0.519 5.519 21 Si 0.697 3.303 22 H -0.197 1.197 23 H -0.203 1.203 24 H -0.187 1.187 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.251 0.749 34 H 0.180 0.820 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.052 0.948 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.804 -8.463 3.972 15.854 hybrid contribution 0.595 -1.602 -0.209 1.722 sum -12.209 -10.065 3.763 16.264 Atomic orbital electron populations 1.21724 0.93407 1.02145 1.03485 1.22604 0.95961 0.83499 1.00191 1.88052 1.18128 1.26362 1.94950 1.21751 0.83892 0.95557 0.96971 0.89298 1.22284 1.02512 1.03969 0.94439 1.20338 0.81377 0.88138 0.79710 1.90654 1.49775 1.47762 1.48157 1.42682 1.08441 1.20790 1.56850 1.17878 0.86812 0.88838 0.98064 1.21299 1.00831 0.96043 1.14218 1.22057 0.90990 0.97656 1.00254 1.20037 1.00365 0.92200 0.99556 1.77364 1.18922 0.96401 1.18057 1.48891 1.04199 1.15957 1.43872 1.19931 0.80467 0.89914 0.98631 1.21199 1.11436 1.26174 0.99576 0.90025 1.24816 0.96378 0.96443 0.94775 1.69873 1.23663 1.42367 1.15999 0.86934 0.80406 0.81945 0.81055 1.19677 1.20333 1.18744 0.91695 0.91077 0.91625 0.93061 0.93198 0.90192 0.90696 0.90994 0.74929 0.81963 0.91117 0.91039 0.91495 0.92717 0.94806 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.28 37.15 0.38 -0.82 16 2 C 0.05 0.49 6.47 37.15 0.24 0.73 16 3 O -0.36 -4.69 9.53 -55.09 -0.52 -5.21 16 4 C 0.08 0.98 3.13 -27.89 -0.09 0.89 16 5 H 0.09 0.83 7.79 -51.93 -0.40 0.42 16 6 C -0.17 -1.92 9.48 37.16 0.35 -1.57 16 7 C 0.52 8.52 7.14 -10.99 -0.08 8.44 16 8 O -0.49 -9.66 13.64 -14.32 -0.20 -9.86 16 9 N -0.64 -11.05 5.38 -11.46 -0.06 -11.11 16 10 C 0.31 6.43 7.66 -153.16 -1.17 5.26 16 11 C -0.29 -6.06 9.58 -39.78 -0.38 -6.44 16 12 C 0.06 1.12 7.21 -82.44 -0.59 0.53 16 13 C -0.06 -0.94 10.44 36.01 0.38 -0.56 16 14 N -0.28 -6.53 12.56 33.65 0.42 -6.11 16 15 N -0.34 -7.92 3.60 -61.57 -0.22 -8.14 16 16 C 0.23 5.35 5.07 -5.19 -0.03 5.32 16 17 C -0.55 -14.78 9.94 -34.44 -0.34 -15.12 16 18 H 0.08 2.54 8.06 -52.48 -0.42 2.12 16 19 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16 20 N -0.88 -25.41 13.96 55.43 0.77 -24.63 16 21 Si 0.87 19.24 27.47 -169.99 -4.67 14.57 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.26 -5.61 6.54 56.52 0.37 -5.24 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.39 7.87 -51.93 -0.41 -0.02 16 29 H 0.05 0.40 8.09 -51.93 -0.42 -0.02 16 30 H 0.08 0.87 7.92 -51.93 -0.41 0.46 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.63 7.87 -51.93 -0.41 0.22 16 33 H 0.41 6.31 7.75 -40.82 -0.32 5.99 16 34 H 0.16 3.32 5.83 -52.48 -0.31 3.02 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.05 1.30 7.20 -51.93 -0.37 0.92 16 39 H 0.03 0.70 6.93 -51.93 -0.36 0.34 16 40 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 339.37 15.07 5.11 5.11 Total: -1.00 -33.59 339.37 -6.75 -40.34 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -5.96 Total: 6.31 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -1.43 Total: -1.27 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: 0.91 Total: -49.99 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.72 Total: -15.07 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.67 Total: 14.57 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.59 -6.75 -40.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068218855.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.734 kcal (2) G-P(sol) polarization free energy of solvation -33.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds