Wall clock time and date at job start Tue Mar 31 2020 05:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42900 * 109.47191 * 2 1 4 4 C 1.42905 * 114.00074 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.46610 * 329.99409 * 4 3 2 6 6 C 1.52997 * 109.47264 * 89.99687 * 4 3 2 7 7 C 1.50697 * 109.46996 * 210.00118 * 4 3 2 8 8 O 1.21296 * 119.99825 * 354.99266 * 7 4 3 9 9 N 1.34778 * 119.99902 * 174.99831 * 7 4 3 10 10 C 1.39479 * 119.99717 * 179.97438 * 9 7 4 11 11 C 1.36106 * 126.21839 * 359.68942 * 10 9 7 12 12 C 1.39755 * 107.82765 * 179.90711 * 11 10 9 13 13 C 1.50703 * 125.83728 * 180.14037 * 12 11 10 14 14 N 1.30849 * 108.32492 * 0.36076 * 12 11 10 15 15 N 1.35257 * 126.21391 * 180.02562 * 10 9 7 16 16 C 1.46499 * 126.04916 * 359.95960 * 15 10 9 17 17 C 1.50699 * 109.47516 * 90.00023 * 16 15 10 18 18 H 1.08004 * 119.99137 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00594 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00072 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99750 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47146 * 90.00147 * 21 19 17 23 23 H 1.48501 * 109.47048 * 210.00234 * 21 19 17 24 24 H 1.48506 * 109.47277 * 329.99858 * 21 19 17 25 25 H 1.08996 * 109.47076 * 60.00588 * 1 2 3 26 26 H 1.09005 * 109.47393 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47014 * 299.99934 * 1 2 3 28 28 H 1.09004 * 109.47542 * 239.99540 * 2 1 3 29 29 H 1.09003 * 109.47563 * 120.00137 * 2 1 3 30 30 H 1.09002 * 109.47153 * 179.97438 * 6 4 3 31 31 H 1.09001 * 109.46832 * 60.00108 * 6 4 3 32 32 H 1.09004 * 109.47261 * 300.00089 * 6 4 3 33 33 H 0.96996 * 120.00226 * 0.02562 * 9 7 4 34 34 H 1.08004 * 126.08392 * 0.02562 * 11 10 9 35 35 H 1.08990 * 109.47338 * 270.23804 * 13 12 11 36 36 H 1.09000 * 109.46855 * 30.23809 * 13 12 11 37 37 H 1.09001 * 109.47031 * 150.23417 * 13 12 11 38 38 H 1.08997 * 109.47217 * 210.00697 * 16 15 10 39 39 H 1.09003 * 109.47144 * 330.00385 * 16 15 10 40 40 H 0.97001 * 119.99638 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8635 0.6016 0.5130 6 6 3.9387 1.5005 -1.4433 7 6 3.8348 2.7263 0.7099 8 8 2.9863 3.5047 1.0912 9 7 5.1387 2.9937 0.9214 10 6 5.5125 4.1659 1.5784 11 6 4.6715 5.1257 2.0517 12 6 5.4510 6.1251 2.6405 13 6 4.9309 7.3787 3.2956 14 7 6.7099 5.7886 2.5215 15 7 6.7769 4.5582 1.8554 16 6 8.0002 3.8258 1.5187 17 6 8.4824 4.2527 0.1563 18 1 7.9328 4.9957 -0.4026 19 6 9.6251 3.6949 -0.3766 20 7 10.0462 4.0679 -1.5654 21 14 10.5752 2.4094 0.5899 22 1 10.0586 1.0576 0.2566 23 1 12.0155 2.4896 0.2374 24 1 10.4069 2.6590 2.0441 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 5.0253 1.5870 -1.4437 31 1 3.5060 2.3591 -1.9568 32 1 3.6466 0.5847 -1.9571 33 1 5.8172 2.3714 0.6160 34 1 3.5935 5.1156 1.9859 35 1 4.8516 8.1713 2.5517 36 1 3.9481 7.1835 3.7246 37 1 5.6167 7.6878 4.0843 38 1 8.7689 4.0421 2.2605 39 1 7.7927 2.7558 1.5118 40 1 10.8499 3.6751 -1.9404 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068218855.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:14 Heat of formation + Delta-G solvation = -28.350327 kcal Electronic energy + Delta-G solvation = -22224.964195 eV Core-core repulsion = 18847.953190 eV Total energy + Delta-G solvation = -3377.011005 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.51762 -40.91295 -38.82979 -36.34388 -35.59041 -34.04426 -33.42626 -31.34483 -30.96257 -29.73194 -28.02959 -25.86331 -24.38052 -23.67035 -22.62682 -21.35132 -20.73650 -19.26205 -18.67123 -18.14298 -17.54880 -16.97005 -16.65746 -16.46557 -15.99328 -15.78314 -15.39548 -14.90519 -14.46916 -14.30421 -14.21969 -14.17337 -13.80022 -13.53818 -13.43462 -13.24097 -13.13545 -12.92880 -12.88518 -12.53854 -12.33097 -12.14184 -12.04688 -11.87236 -11.79535 -11.47971 -10.98544 -10.90929 -10.55191 -9.64807 -9.12428 -8.41937 -6.55023 0.70672 1.13104 1.33321 1.38795 1.48175 1.55940 1.99342 2.02148 2.25392 2.79742 2.89424 3.36454 3.75490 3.82660 3.92869 4.16515 4.22110 4.34220 4.43582 4.51406 4.54169 4.57876 4.63960 4.74310 4.82117 4.87062 4.87778 4.93262 5.04667 5.11703 5.16724 5.17796 5.20553 5.29925 5.85161 5.94927 6.03322 6.19536 6.34101 6.49368 6.88356 6.95700 7.10057 8.74471 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013053 B = 0.005493 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.572384 B = 5096.477339 C = 6773.061315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.045 3.955 3 O -0.387 6.387 4 C 0.089 3.911 5 H 0.128 0.872 6 C -0.171 4.171 7 C 0.516 3.484 8 O -0.529 6.529 9 N -0.634 5.634 10 C 0.303 3.697 11 C -0.309 4.309 12 C 0.062 3.938 13 C -0.062 4.062 14 N -0.326 5.326 15 N -0.365 5.365 16 C 0.238 3.762 17 C -0.555 4.555 18 H 0.021 0.979 19 C 0.026 3.974 20 N -0.934 5.934 21 Si 0.949 3.051 22 H -0.242 1.242 23 H -0.281 1.281 24 H -0.248 1.248 25 H 0.057 0.943 26 H 0.097 0.903 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.102 0.898 33 H 0.424 0.576 34 H 0.164 0.836 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.052 0.948 39 H 0.069 0.931 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.784 -12.085 4.721 18.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.031 4.031 3 O -0.306 6.306 4 C 0.028 3.972 5 H 0.145 0.855 6 C -0.228 4.228 7 C 0.303 3.697 8 O -0.402 6.402 9 N -0.283 5.283 10 C 0.080 3.920 11 C -0.341 4.341 12 C -0.104 4.104 13 C -0.120 4.120 14 N -0.151 5.151 15 N -0.150 5.150 16 C 0.118 3.882 17 C -0.593 4.593 18 H 0.040 0.960 19 C -0.174 4.174 20 N -0.572 5.572 21 Si 0.770 3.230 22 H -0.165 1.165 23 H -0.206 1.206 24 H -0.171 1.171 25 H 0.076 0.924 26 H 0.115 0.885 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.120 0.880 33 H 0.262 0.738 34 H 0.182 0.818 35 H 0.101 0.899 36 H 0.115 0.885 37 H 0.097 0.903 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.116 -11.210 5.022 17.970 hybrid contribution 0.549 -0.665 -0.606 1.053 sum -12.567 -11.875 4.417 17.845 Atomic orbital electron populations 1.21768 0.92983 1.03527 1.02488 1.22904 0.96407 0.81909 1.01870 1.88030 1.18374 1.29073 1.95108 1.21800 0.84161 0.94049 0.97239 0.85505 1.22283 1.02254 1.04607 0.93678 1.21346 0.80398 0.89158 0.78774 1.90624 1.50563 1.49345 1.49678 1.42831 1.09319 1.19805 1.56389 1.18251 0.86261 0.89965 0.97481 1.21488 1.00941 0.96597 1.15037 1.22878 0.90051 0.98700 0.98740 1.20239 1.01700 0.90125 0.99946 1.77302 1.20614 0.97229 1.19952 1.48836 1.04557 1.16472 1.45128 1.19782 0.80902 0.91606 0.95920 1.21206 1.11670 1.25257 1.01146 0.96024 1.25816 0.97073 0.98872 0.95657 1.70036 1.24545 1.44298 1.18271 0.85711 0.78060 0.79487 0.79783 1.16532 1.20605 1.17142 0.92399 0.88485 0.92939 0.90954 0.91800 0.90234 0.92809 0.87962 0.73788 0.81834 0.89920 0.88544 0.90266 0.92960 0.91333 0.91633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 10.28 71.98 0.74 -1.39 16 2 C 0.04 0.70 6.47 71.98 0.47 1.16 16 3 O -0.39 -9.54 9.53 -129.99 -1.24 -10.78 16 4 C 0.09 1.99 3.13 29.85 0.09 2.08 16 5 H 0.13 1.89 7.79 -2.39 -0.02 1.87 16 6 C -0.17 -3.44 9.48 71.98 0.68 -2.76 16 7 C 0.52 16.62 7.14 87.66 0.63 17.25 16 8 O -0.53 -20.92 13.64 15.91 0.22 -20.70 16 9 N -0.63 -21.61 5.38 -308.56 -1.66 -23.27 16 10 C 0.30 12.84 7.66 131.32 1.01 13.84 16 11 C -0.31 -12.96 9.58 22.14 0.21 -12.74 16 12 C 0.06 2.50 7.21 43.07 0.31 2.81 16 13 C -0.06 -1.77 10.44 71.24 0.74 -1.02 16 14 N -0.33 -15.32 12.56 -47.45 -0.60 -15.92 16 15 N -0.36 -16.98 3.60 -348.72 -1.26 -18.24 16 16 C 0.24 10.97 5.07 85.63 0.43 11.41 16 17 C -0.55 -30.86 9.94 25.60 0.25 -30.60 16 18 H 0.02 1.42 8.06 -2.91 -0.02 1.40 16 19 C 0.03 1.42 5.47 84.65 0.46 1.88 16 20 N -0.93 -55.00 13.96 21.44 0.30 -54.70 16 21 Si 0.95 38.57 27.47 68.60 1.88 40.45 16 22 H -0.24 -8.69 7.11 99.48 0.71 -7.99 16 23 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 24 H -0.25 -9.43 6.54 99.48 0.65 -8.78 16 25 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 27 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.07 0.82 7.87 -2.39 -0.02 0.80 16 29 H 0.06 0.81 8.09 -2.39 -0.02 0.80 16 30 H 0.08 1.61 7.92 -2.39 -0.02 1.59 16 31 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.10 1.44 7.87 -2.38 -0.02 1.43 16 33 H 0.42 12.40 7.75 -92.71 -0.72 11.68 16 34 H 0.16 6.80 5.83 -2.91 -0.02 6.78 16 35 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.08 2.07 8.14 -2.39 -0.02 2.06 16 38 H 0.05 2.43 7.20 -2.39 -0.02 2.41 16 39 H 0.07 2.67 6.93 -2.39 -0.02 2.65 16 40 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -76.95 339.37 3.95 -73.00 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: 0.27 Total: 28.24 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 6.03 Total: 1.92 kcal Atomic # 7 Polarization: -108.92 SS G_CDS: -3.21 Total: -112.13 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -1.02 Total: -31.48 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 1.88 Total: 40.45 kcal Total: -76.95 3.95 -73.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068218855.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.648 kcal (2) G-P(sol) polarization free energy of solvation -76.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds