Wall clock time and date at job start Tue Mar 31 2020 05:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47253 * 2 1 4 4 C 1.37100 * 120.00113 * 264.74401 * 3 2 1 5 5 H 1.07993 * 120.00252 * 146.16079 * 4 3 2 6 6 C 1.38955 * 119.99742 * 326.16729 * 4 3 2 7 7 N 1.31414 * 119.99744 * 337.68754 * 6 4 3 8 8 Si 1.86800 * 119.99780 * 157.69026 * 6 4 3 9 9 H 1.48506 * 109.47103 * 59.99692 * 8 6 4 10 10 H 1.48497 * 109.47002 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46992 * 299.99712 * 8 6 4 12 12 C 1.34783 * 119.99868 * 84.74806 * 3 2 1 13 13 O 1.21295 * 119.99494 * 180.02562 * 12 3 2 14 14 C 1.50691 * 119.99977 * 359.97438 * 12 3 2 15 15 C 1.53006 * 109.46877 * 180.02562 * 14 12 3 16 16 C 1.50704 * 109.47054 * 179.97438 * 15 14 12 17 17 N 1.31127 * 126.54884 * 90.01626 * 16 15 14 18 18 C 1.34495 * 105.61390 * 179.97438 * 17 16 15 19 19 C 1.50702 * 126.28768 * 179.97438 * 18 17 16 20 20 C 1.53000 * 109.46986 * 120.05400 * 19 18 17 21 21 C 1.53000 * 109.47327 * 240.05507 * 19 18 17 22 22 N 1.29938 * 107.42629 * 0.02562 * 18 17 16 23 23 O 1.21306 * 110.25218 * 359.97438 * 22 18 17 24 24 H 1.09003 * 109.46990 * 300.00524 * 1 2 3 25 25 H 1.09003 * 109.46882 * 60.00066 * 1 2 3 26 26 H 1.08992 * 109.47030 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47295 * 239.99852 * 2 1 3 28 28 H 1.09003 * 109.46882 * 119.99934 * 2 1 3 29 29 H 0.96996 * 119.99394 * 180.02562 * 7 6 4 30 30 H 1.09003 * 109.47448 * 60.00742 * 14 12 3 31 31 H 1.08997 * 109.47242 * 299.99935 * 14 12 3 32 32 H 1.08997 * 109.46964 * 60.00243 * 15 14 12 33 33 H 1.08997 * 109.47018 * 299.99933 * 15 14 12 34 34 H 1.09005 * 109.47302 * 0.05565 * 19 18 17 35 35 H 1.08992 * 109.47099 * 60.00251 * 20 19 18 36 36 H 1.09004 * 109.46675 * 180.02562 * 20 19 18 37 37 H 1.09000 * 109.47039 * 300.00048 * 20 19 18 38 38 H 1.09001 * 109.47333 * 59.99466 * 21 19 18 39 39 H 1.08995 * 109.47548 * 180.02562 * 21 19 18 40 40 H 1.09005 * 109.46976 * 300.00257 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3494 1.9912 -1.1823 5 1 2.1816 3.0505 -1.3089 6 6 2.9008 1.2465 -2.2178 7 7 3.5052 0.1086 -1.9592 8 14 2.7830 1.8630 -3.9772 9 1 3.4565 3.1820 -4.0857 10 1 3.4448 0.8934 -4.8867 11 1 1.3546 2.0038 -4.3577 12 6 2.1423 2.0521 1.1624 13 8 2.5462 3.1959 1.1622 14 6 1.7779 1.3818 2.4618 15 6 2.0085 2.3549 3.6199 16 6 1.6436 1.6847 4.9194 17 7 2.4433 0.9877 5.6901 18 6 1.6881 0.5891 6.7292 19 6 2.1471 -0.2455 7.8971 20 6 1.9446 0.5387 9.1951 21 6 1.3325 -1.5395 7.9506 22 7 0.4899 1.0549 6.5407 23 8 0.4431 1.6873 5.5066 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8904 -0.4110 -2.6820 30 1 2.3993 0.4971 2.6011 31 1 0.7284 1.0886 2.4377 32 1 1.3869 3.2393 3.4805 33 1 3.0579 2.6484 3.6442 34 1 3.2037 -0.4860 7.7789 35 1 0.8881 0.7791 9.3133 36 1 2.2770 -0.0649 10.0398 37 1 2.5250 1.4605 9.1570 38 1 1.4766 -2.0982 7.0258 39 1 1.6641 -2.1430 8.7955 40 1 0.2759 -1.2991 8.0688 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068240698.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:31 Heat of formation + Delta-G solvation = 18.635120 kcal Electronic energy + Delta-G solvation = -21974.648387 eV Core-core repulsion = 18599.674825 eV Total energy + Delta-G solvation = -3374.973563 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.50345 -38.72751 -36.93340 -35.40988 -34.83912 -33.26139 -32.05039 -30.55944 -29.48615 -27.49075 -26.19876 -24.60446 -24.26546 -22.75811 -22.13055 -20.04940 -18.87216 -17.89843 -17.49477 -16.85251 -16.11884 -15.26697 -15.14112 -14.88133 -14.58760 -14.24287 -13.69498 -13.67739 -13.31062 -12.91566 -12.66462 -12.53499 -12.40132 -12.12996 -11.85479 -11.81416 -11.70808 -11.58618 -11.32066 -11.17626 -11.06151 -10.96788 -10.93588 -10.82285 -10.38458 -10.31708 -10.10255 -9.80552 -8.96961 -8.48064 -7.53688 -6.36364 -3.97506 1.21183 2.27781 2.90562 3.17490 3.24354 3.27890 3.56207 3.84092 4.04465 4.14015 4.64810 4.77331 4.78288 4.85239 4.99942 5.16282 5.29760 5.31314 5.34442 5.50086 5.51274 5.58774 5.68604 5.76945 5.87001 5.89181 5.90586 5.98656 6.06903 6.15126 6.22229 6.26135 6.35415 6.51049 6.86353 7.24224 7.57075 8.19844 8.23993 8.46143 9.14086 9.37665 9.95462 10.67272 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.034669 B = 0.003373 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.446833 B = 8299.607131 C = 8512.325080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.093 3.907 3 N -0.436 5.436 4 C -0.310 4.310 5 H 0.094 0.906 6 C 0.036 3.964 7 N -0.868 5.868 8 Si 0.918 3.082 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.273 1.273 12 C 0.459 3.541 13 O -0.584 6.584 14 C -0.131 4.131 15 C -0.011 4.011 16 C 0.198 3.802 17 N -0.485 5.485 18 C 0.172 3.828 19 C -0.004 4.004 20 C -0.144 4.144 21 C -0.145 4.145 22 N -0.388 5.388 23 O 0.072 5.928 24 H 0.042 0.958 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.114 0.886 28 H 0.048 0.952 29 H 0.269 0.731 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.117 0.883 34 H 0.101 0.899 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.819 -3.947 14.880 16.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.031 4.031 3 N -0.154 5.154 4 C -0.437 4.437 5 H 0.111 0.889 6 C -0.168 4.168 7 N -0.506 5.506 8 Si 0.745 3.255 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.247 3.753 13 O -0.468 6.468 14 C -0.172 4.172 15 C -0.050 4.050 16 C -0.022 4.022 17 N -0.218 5.218 18 C -0.101 4.101 19 C -0.024 4.024 20 C -0.202 4.202 21 C -0.203 4.203 22 N -0.097 5.097 23 O 0.015 5.985 24 H 0.061 0.939 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.132 0.868 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.126 0.874 33 H 0.135 0.865 34 H 0.119 0.881 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.795 -3.866 15.422 16.606 hybrid contribution -0.038 0.079 -1.031 1.035 sum -4.833 -3.788 14.391 15.646 Atomic orbital electron populations 1.22211 0.98146 1.00407 1.01546 1.21625 0.91763 0.85467 1.04231 1.43502 1.55233 1.11832 1.04866 1.19438 1.39994 0.95537 0.88758 0.88881 1.25340 0.94432 0.96475 1.00568 1.69914 1.32348 1.15261 1.33085 0.86128 0.78653 0.78790 0.81953 1.19693 1.20992 1.19882 1.19981 0.82900 0.87966 0.84502 1.90533 1.50892 1.18646 1.86773 1.21626 1.03213 0.99130 0.93276 1.20061 1.05361 0.97521 0.82095 1.29140 0.80246 0.94754 0.98062 1.71961 1.31247 1.14739 1.03896 1.25813 0.86284 1.00390 0.97654 1.19535 1.01390 0.93020 0.88420 1.21840 1.02704 1.00185 0.95484 1.21844 1.00312 0.95531 1.02588 1.74538 1.21713 1.11984 1.01474 1.85298 1.34518 1.52927 1.25724 0.93893 0.92339 0.93089 0.86813 0.93387 0.92114 0.89324 0.89777 0.87415 0.86481 0.88078 0.91915 0.91171 0.92311 0.92168 0.91170 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 10.15 37.16 0.38 -2.51 16 2 C 0.09 1.96 5.43 -4.04 -0.02 1.94 16 3 N -0.44 -10.65 2.56 -114.81 -0.29 -10.95 16 4 C -0.31 -8.36 8.98 -14.93 -0.13 -8.49 16 5 H 0.09 2.62 7.70 -52.49 -0.40 2.22 16 6 C 0.04 0.93 4.92 -17.46 -0.09 0.84 16 7 N -0.87 -22.88 11.33 55.50 0.63 -22.25 16 8 Si 0.92 20.17 29.61 -169.99 -5.03 15.13 16 9 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 12 C 0.46 10.56 7.59 -10.99 -0.08 10.48 16 13 O -0.58 -15.26 15.81 5.54 0.09 -15.17 16 14 C -0.13 -2.26 4.29 -27.88 -0.12 -2.38 16 15 C -0.01 -0.17 5.13 -27.88 -0.14 -0.31 16 16 C 0.20 2.96 7.77 -13.06 -0.10 2.86 16 17 N -0.48 -7.56 11.55 -9.87 -0.11 -7.68 16 18 C 0.17 2.41 6.72 -156.38 -1.05 1.36 16 19 C 0.00 -0.04 3.39 -91.77 -0.31 -0.35 16 20 C -0.14 -1.25 9.18 37.16 0.34 -0.91 16 21 C -0.14 -1.29 9.18 37.16 0.34 -0.95 16 22 N -0.39 -5.76 12.16 30.90 0.38 -5.38 16 23 O 0.07 1.08 11.31 18.11 0.20 1.29 16 24 H 0.04 0.69 6.59 -51.93 -0.34 0.35 16 25 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.11 2.67 5.34 -51.93 -0.28 2.39 16 28 H 0.05 0.92 6.66 -51.93 -0.35 0.58 16 29 H 0.27 6.69 8.31 -40.82 -0.34 6.36 16 30 H 0.09 1.51 7.41 -51.93 -0.38 1.12 16 31 H 0.08 1.31 6.53 -51.93 -0.34 0.97 16 32 H 0.11 1.55 8.10 -51.93 -0.42 1.12 16 33 H 0.12 1.85 8.10 -51.93 -0.42 1.43 16 34 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 336.39 15.07 5.07 5.07 Total: -1.00 -30.48 336.39 -5.94 -36.43 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -5.87 Total: 1.93 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -0.99 Total: 1.59 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: 0.60 Total: -46.26 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: 0.29 Total: -13.89 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.03 Total: 15.13 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.48 -5.94 -36.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068240698.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.060 kcal (2) G-P(sol) polarization free energy of solvation -30.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds