Wall clock time and date at job start Tue Mar 31 2020 06:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00178 * 2 1 4 4 C 1.53002 * 109.47278 * 179.97438 * 3 2 1 5 5 N 1.46897 * 109.47126 * 67.06243 * 4 3 2 6 6 C 1.46904 * 110.99832 * 290.01606 * 5 4 3 7 7 C 1.50696 * 109.46971 * 299.69841 * 6 5 4 8 8 H 1.08002 * 120.00171 * 354.87622 * 7 6 5 9 9 C 1.37878 * 120.00131 * 174.88221 * 7 6 5 10 10 N 1.31515 * 119.99804 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00118 * 180.02562 * 9 7 6 12 12 H 1.48491 * 109.47168 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47272 * 120.00133 * 11 9 7 14 14 H 1.48506 * 109.46834 * 239.99659 * 11 9 7 15 15 C 1.46902 * 111.00190 * 53.96851 * 5 4 3 16 16 C 1.50695 * 109.47220 * 66.04653 * 15 5 4 17 17 N 1.29945 * 126.28929 * 269.98175 * 16 15 5 18 18 O 1.21296 * 110.25380 * 179.72420 * 17 16 15 19 19 C 1.33644 * 109.80826 * 0.46551 * 18 17 16 20 20 C 1.50710 * 126.54931 * 179.80544 * 19 18 17 21 21 C 1.52999 * 117.50042 * 59.68478 * 20 19 18 22 22 C 1.53000 * 60.03109 * 252.52127 * 21 20 19 23 23 N 1.31127 * 106.90037 * 359.53800 * 19 18 17 24 24 H 1.09006 * 109.46971 * 299.99998 * 1 2 3 25 25 H 1.08994 * 109.46874 * 60.00075 * 1 2 3 26 26 H 1.09000 * 109.46725 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47248 * 59.99884 * 3 2 1 28 28 H 1.09000 * 109.46810 * 300.00143 * 3 2 1 29 29 H 1.08995 * 109.47045 * 307.06022 * 4 3 2 30 30 H 1.09005 * 109.46831 * 187.05839 * 4 3 2 31 31 H 1.09001 * 109.47140 * 59.69732 * 6 5 4 32 32 H 1.09003 * 109.46800 * 179.69934 * 6 5 4 33 33 H 0.97003 * 119.99960 * 179.97438 * 10 9 7 34 34 H 1.09000 * 109.47210 * 306.04845 * 15 5 4 35 35 H 1.08999 * 109.47324 * 186.04705 * 15 5 4 36 36 H 1.08999 * 115.55830 * 205.37431 * 20 19 18 37 37 H 1.08997 * 117.49333 * 145.02038 * 21 20 19 38 38 H 1.08993 * 117.49928 * 0.02562 * 21 20 19 39 39 H 1.09000 * 117.49794 * 107.47998 * 22 21 20 40 40 H 1.08996 * 117.50214 * 252.47713 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9815 0.6077 -1.2745 6 6 3.6015 -0.8079 -1.3734 7 6 4.2436 -1.5800 -0.2497 8 1 4.9363 -1.0879 0.4169 9 6 3.9468 -2.9148 -0.0727 10 7 3.1037 -3.5143 -0.8848 11 14 4.7421 -3.8717 1.3206 12 1 5.6455 -2.9745 2.0847 13 1 3.6880 -4.3995 2.2236 14 1 5.5256 -5.0021 0.7605 15 6 3.4559 1.3745 -2.4119 16 6 4.0624 2.7540 -2.4110 17 7 3.5840 3.8041 -1.8134 18 8 4.3082 4.7593 -1.9992 19 6 5.3436 4.4007 -2.7643 20 6 6.4671 5.2912 -3.2289 21 6 7.3258 5.9634 -2.1557 22 6 6.3313 6.7937 -2.9698 23 7 5.1982 3.1246 -3.0287 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.8484 0.5387 0.8209 30 1 3.9782 2.1727 0.1269 31 1 2.5175 -0.8988 -1.3037 32 1 3.9391 -1.2088 -2.3291 33 1 2.8952 -4.4534 -0.7605 34 1 2.3721 1.4541 -2.3266 35 1 3.7108 0.8662 -3.3418 36 1 6.9627 4.9817 -4.1491 37 1 8.3862 6.0961 -2.3699 38 1 7.0783 5.7613 -1.1137 39 1 5.4295 7.1375 -2.4633 40 1 6.7375 7.4730 -3.7192 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072689909.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:14 Heat of formation + Delta-G solvation = 72.144729 kcal Electronic energy + Delta-G solvation = -22542.874517 eV Core-core repulsion = 19170.221305 eV Total energy + Delta-G solvation = -3372.653212 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -45.39396 -38.31129 -37.70168 -36.23273 -35.08636 -32.58217 -31.77369 -29.18374 -28.01666 -25.97614 -24.96155 -24.93886 -23.25139 -22.76044 -22.46250 -20.74469 -19.41301 -17.95105 -17.32663 -16.53980 -16.28901 -15.96675 -15.76910 -14.95036 -14.69850 -14.38102 -14.01843 -13.82700 -13.37117 -13.01569 -12.33099 -12.01894 -11.95678 -11.95223 -11.83515 -11.53113 -11.43401 -11.22684 -11.07157 -10.93717 -10.89196 -10.74015 -10.67556 -10.53473 -10.14276 -9.83984 -9.53988 -9.05833 -8.96339 -8.28599 -7.15630 -5.87737 -3.85322 1.25243 2.42472 2.82260 3.37271 3.39150 3.46034 3.50820 3.76548 4.23036 4.38269 4.41581 4.51475 4.56032 4.75093 5.09854 5.19162 5.26492 5.43326 5.49630 5.55892 5.62571 5.65426 5.70564 5.71151 5.82642 5.86705 5.91422 6.01646 6.11479 6.16814 6.23870 6.28533 6.76780 7.30250 7.70513 7.85945 7.88028 8.09800 8.28984 8.40317 8.63788 9.18947 9.75464 11.23857 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.021110 B = 0.004408 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.072446 B = 6350.018196 C = 7104.270754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.345 6.345 3 C 0.026 3.974 4 C 0.063 3.937 5 N -0.523 5.523 6 C 0.183 3.817 7 C -0.493 4.493 8 H 0.058 0.942 9 C 0.060 3.940 10 N -0.896 5.896 11 Si 0.892 3.108 12 H -0.274 1.274 13 H -0.287 1.287 14 H -0.286 1.286 15 C 0.132 3.868 16 C 0.200 3.800 17 N -0.388 5.388 18 O 0.069 5.931 19 C 0.193 3.807 20 C -0.074 4.074 21 C -0.154 4.154 22 C -0.161 4.161 23 N -0.460 5.460 24 H 0.029 0.971 25 H 0.029 0.971 26 H 0.083 0.917 27 H 0.037 0.963 28 H 0.042 0.958 29 H 0.099 0.901 30 H 0.060 0.940 31 H 0.041 0.959 32 H 0.022 0.978 33 H 0.257 0.743 34 H 0.059 0.941 35 H 0.099 0.901 36 H 0.148 0.852 37 H 0.112 0.888 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.073 19.180 -3.473 19.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.263 6.263 3 C -0.052 4.052 4 C -0.066 4.066 5 N -0.248 5.248 6 C 0.060 3.940 7 C -0.531 4.531 8 H 0.076 0.924 9 C -0.141 4.141 10 N -0.536 5.536 11 Si 0.720 3.280 12 H -0.199 1.199 13 H -0.213 1.213 14 H -0.213 1.213 15 C 0.002 3.998 16 C -0.073 4.073 17 N -0.097 5.097 18 O 0.011 5.989 19 C -0.027 4.027 20 C -0.094 4.094 21 C -0.192 4.192 22 C -0.199 4.199 23 N -0.193 5.193 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.101 0.899 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.118 0.882 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.040 0.960 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.117 0.883 36 H 0.165 0.835 37 H 0.131 0.869 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.971 18.409 -3.246 18.796 hybrid contribution -0.660 -0.344 0.742 1.051 sum 1.310 18.064 -2.504 18.284 Atomic orbital electron populations 1.22680 0.83567 1.02285 0.98361 1.88457 1.17481 1.25686 1.94628 1.23273 0.97117 0.85869 0.98975 1.22197 0.89803 0.99288 0.95305 1.62349 1.58105 1.05666 0.98720 1.20091 0.97512 0.79100 0.97339 1.21026 1.24834 0.94257 1.13026 0.92391 1.24857 0.95326 0.97623 0.96296 1.69967 1.34922 1.10981 1.37769 0.86543 0.79057 0.79949 0.82410 1.19909 1.21294 1.21260 1.20444 0.96117 0.84570 0.98644 1.26024 0.89909 0.98033 0.93329 1.74641 1.16343 0.96453 1.22304 1.85224 1.27847 1.33235 1.52558 1.27629 0.91935 0.91054 0.92074 1.20247 0.94670 0.92089 1.02364 1.23155 0.97793 1.01315 0.96967 1.23163 1.02278 0.91070 1.03374 1.71885 1.16092 1.08205 1.23144 0.95289 0.95287 0.89867 0.94430 0.93992 0.88237 0.92184 0.94112 0.96045 0.93342 0.92327 0.88252 0.83450 0.86929 0.87885 0.87573 0.87071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.60 16 2 O -0.34 -7.50 7.58 -35.23 -0.27 -7.77 16 3 C 0.03 0.50 5.69 37.16 0.21 0.71 16 4 C 0.06 1.32 5.44 -3.82 -0.02 1.29 16 5 N -0.52 -11.83 4.74 -237.52 -1.13 -12.95 16 6 C 0.18 4.84 4.29 -4.98 -0.02 4.81 16 7 C -0.49 -14.07 8.21 -34.44 -0.28 -14.35 16 8 H 0.06 1.67 6.98 -52.49 -0.37 1.30 16 9 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 10 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 11 Si 0.89 22.25 29.54 -169.99 -5.02 17.23 16 12 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 C 0.13 2.59 5.23 -4.98 -0.03 2.56 16 16 C 0.20 3.66 6.85 -156.37 -1.07 2.59 16 17 N -0.39 -6.65 11.63 30.89 0.36 -6.29 16 18 O 0.07 1.01 11.08 18.10 0.20 1.21 16 19 C 0.19 2.67 7.97 -13.06 -0.10 2.56 16 20 C -0.07 -0.66 6.33 -91.73 -0.58 -1.24 16 21 C -0.15 -1.06 10.23 -26.73 -0.27 -1.34 16 22 C -0.16 -0.99 10.18 -26.69 -0.27 -1.26 16 23 N -0.46 -7.98 11.55 -9.87 -0.11 -8.09 16 24 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.04 0.78 5.80 -51.93 -0.30 0.48 16 29 H 0.10 2.29 6.33 -51.93 -0.33 1.96 16 30 H 0.06 1.18 7.08 -51.93 -0.37 0.82 16 31 H 0.04 1.14 5.29 -51.93 -0.27 0.87 16 32 H 0.02 0.61 8.05 -51.93 -0.42 0.19 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.06 1.12 5.71 -51.93 -0.30 0.82 16 35 H 0.10 1.92 8.01 -51.93 -0.42 1.50 16 36 H 0.15 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.11 0.68 8.01 -51.93 -0.42 0.27 16 40 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 332.34 15.07 5.01 5.01 Total: -1.00 -32.95 332.34 -7.35 -40.30 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -5.70 Total: -2.04 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -1.43 Total: -0.43 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: -0.14 Total: -53.52 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.07 Total: -6.55 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.95 -7.35 -40.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072689909.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.441 kcal (2) G-P(sol) polarization free energy of solvation -32.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds