Wall clock time and date at job start Tue Mar 31 2020 05:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42901 * 109.47270 * 2 1 4 4 C 1.42899 * 113.99814 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47767 * 330.00020 * 4 3 2 6 6 C 1.53000 * 109.46887 * 90.00484 * 4 3 2 7 7 C 1.50704 * 109.46616 * 209.99926 * 4 3 2 8 8 N 1.29947 * 126.29338 * 314.97268 * 7 4 3 9 9 O 1.21300 * 110.25138 * 180.02562 * 8 7 4 10 10 C 1.33637 * 109.81246 * 0.02562 * 9 8 7 11 11 C 1.50704 * 126.54694 * 179.97438 * 10 9 8 12 12 N 1.46504 * 109.46910 * 270.02121 * 11 10 9 13 13 C 1.36936 * 119.99819 * 90.00381 * 12 11 10 14 14 H 1.07990 * 120.00038 * 218.04442 * 13 12 11 15 15 C 1.38818 * 119.99852 * 38.04981 * 13 12 11 16 16 N 1.31621 * 120.00526 * 20.57884 * 15 13 12 17 17 Si 1.86800 * 119.99732 * 200.58560 * 15 13 12 18 18 H 1.48498 * 109.47455 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47335 * 119.99680 * 17 15 13 20 20 H 1.48502 * 109.46998 * 239.99375 * 17 15 13 21 21 C 1.46502 * 120.00102 * 269.99974 * 12 11 10 22 22 C 1.53004 * 117.49777 * 193.92738 * 21 12 11 23 23 C 1.53002 * 117.49510 * 125.30752 * 21 12 11 24 24 N 1.31130 * 106.90120 * 0.22541 * 10 9 8 25 25 H 1.09001 * 109.47279 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47339 * 299.99513 * 1 2 3 27 27 H 1.09001 * 109.47574 * 59.99649 * 1 2 3 28 28 H 1.09002 * 109.47339 * 240.00487 * 2 1 3 29 29 H 1.09001 * 109.47574 * 120.00351 * 2 1 3 30 30 H 1.09000 * 109.47470 * 59.99991 * 6 4 3 31 31 H 1.09006 * 109.47054 * 179.97438 * 6 4 3 32 32 H 1.08996 * 109.47323 * 299.99183 * 6 4 3 33 33 H 1.08995 * 109.47693 * 30.02665 * 11 10 9 34 34 H 1.09006 * 109.46624 * 150.02736 * 11 10 9 35 35 H 0.96994 * 120.00374 * 174.97548 * 16 15 13 36 36 H 1.08999 * 115.54747 * 339.63591 * 21 12 11 37 37 H 1.09001 * 117.49635 * 0.02562 * 22 21 12 38 38 H 1.08994 * 117.49792 * 145.01995 * 22 21 12 39 39 H 1.09000 * 117.49605 * 214.98012 * 23 21 12 40 40 H 1.08998 * 117.50068 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4600 -0.0006 5 1 3.8636 0.6015 0.5129 6 6 3.9386 1.5006 -1.4433 7 6 3.8347 2.7262 0.7099 8 7 3.2987 3.8998 0.5545 9 8 3.8490 4.7106 1.2695 10 6 4.8179 4.1133 1.9697 11 6 5.7364 4.7675 2.9694 12 7 6.9347 5.2579 2.2838 13 6 6.9598 6.5283 1.7735 14 1 7.4515 6.7223 0.8318 15 6 6.3533 7.5669 2.4667 16 7 6.1173 7.4481 3.7561 17 14 5.8720 9.1330 1.5695 18 1 6.2430 9.0165 0.1364 19 1 4.4061 9.3400 1.6865 20 1 6.5846 10.2879 2.1726 21 6 8.1060 4.3891 2.1442 22 6 9.4235 5.0420 1.7213 23 6 8.6537 4.1631 0.7335 24 7 4.8203 2.8505 1.6166 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.5059 2.3592 -1.9568 31 1 5.0252 1.5871 -1.4438 32 1 3.6465 0.5848 -1.9572 33 1 5.2216 5.6030 3.4436 34 1 6.0243 4.0401 3.7285 35 1 5.7609 8.1996 4.2552 36 1 8.1590 3.5554 2.8443 37 1 9.4188 6.1181 1.5475 38 1 10.3436 4.6380 2.1434 39 1 9.0674 3.1807 0.5058 40 1 8.1423 4.6604 -0.0906 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076722992.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:07 Heat of formation + Delta-G solvation = 66.551706 kcal Electronic energy + Delta-G solvation = -22498.544849 eV Core-core repulsion = 19125.649105 eV Total energy + Delta-G solvation = -3372.895744 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.73136 -38.51710 -37.24003 -35.16105 -34.00087 -32.75107 -31.50668 -30.35478 -29.88107 -26.58865 -24.73389 -24.14223 -22.86943 -22.40973 -21.44066 -20.57047 -19.92392 -17.35432 -17.16462 -16.78607 -16.24669 -15.74380 -15.50102 -15.11832 -14.53914 -14.23488 -13.75936 -13.37583 -13.26941 -12.99698 -12.80144 -12.29407 -12.12552 -11.93400 -11.78681 -11.57195 -11.29843 -11.01472 -10.95348 -10.91315 -10.81485 -10.67398 -10.60461 -10.30504 -10.13026 -9.81939 -9.77895 -9.50975 -9.12504 -8.64542 -6.80651 -6.09786 -3.66284 1.95153 2.80496 3.27203 3.37648 3.40099 3.41297 3.79636 4.26337 4.30622 4.74543 4.84855 4.85834 4.96038 5.05944 5.08454 5.15897 5.18450 5.26696 5.41115 5.57559 5.67205 5.73570 5.82315 5.93560 5.95598 6.03555 6.09259 6.13663 6.31109 6.42148 6.47820 6.54513 6.70749 6.88413 7.05917 7.09210 7.12444 7.64687 8.23716 8.85947 8.96746 9.48071 10.02332 10.94038 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019695 B = 0.004852 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.347966 B = 5769.143111 C = 6506.649547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.374 6.374 4 C 0.189 3.811 5 H 0.087 0.913 6 C -0.166 4.166 7 C 0.149 3.851 8 N -0.381 5.381 9 O 0.077 5.923 10 C 0.200 3.800 11 C 0.222 3.778 12 N -0.530 5.530 13 C -0.276 4.276 14 H 0.068 0.932 15 C 0.027 3.973 16 N -0.881 5.881 17 Si 0.904 3.096 18 H -0.274 1.274 19 H -0.281 1.281 20 H -0.286 1.286 21 C 0.125 3.875 22 C -0.188 4.188 23 C -0.222 4.222 24 N -0.503 5.503 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.130 0.870 34 H 0.081 0.919 35 H 0.264 0.736 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.176 -12.319 -4.385 13.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.292 6.292 4 C 0.129 3.871 5 H 0.105 0.895 6 C -0.225 4.225 7 C -0.124 4.124 8 N -0.091 5.091 9 O 0.019 5.981 10 C -0.022 4.022 11 C 0.091 3.909 12 N -0.245 5.245 13 C -0.405 4.405 14 H 0.086 0.914 15 C -0.176 4.176 16 N -0.521 5.521 17 Si 0.732 3.268 18 H -0.198 1.198 19 H -0.207 1.207 20 H -0.212 1.212 21 C 0.017 3.983 22 C -0.226 4.226 23 C -0.263 4.263 24 N -0.239 5.239 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.147 0.853 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.113 0.887 37 H 0.119 0.881 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.972 -12.301 -4.790 14.106 hybrid contribution 0.057 0.668 -0.529 0.854 sum -4.915 -11.634 -5.319 13.704 Atomic orbital electron populations 1.21729 0.93598 1.02087 1.03331 1.22549 0.95747 0.83608 1.00155 1.88013 1.19676 1.26524 1.95014 1.19811 0.81778 0.90954 0.94516 0.89518 1.22226 1.02098 1.03073 0.95066 1.25254 0.93984 0.95156 0.98019 1.74542 1.19481 1.00777 1.14270 1.85340 1.37265 1.35473 1.39972 1.31669 0.88727 0.86511 0.95323 1.19992 0.84820 0.98523 0.87519 1.43315 1.05872 1.10442 1.64892 1.19032 1.35890 0.83029 1.02563 0.91429 1.25261 0.99502 0.98086 0.94723 1.69825 1.45134 1.31518 1.05649 0.86215 0.78618 0.82229 0.79752 1.19822 1.20702 1.21207 1.21187 0.87377 0.95460 0.94321 1.23086 0.95083 1.00025 1.04438 1.23308 1.06758 0.99667 0.96558 1.71824 1.20223 1.17397 1.14432 0.91089 0.91795 0.91780 0.93188 0.93172 0.91246 0.90928 0.91464 0.85293 0.90056 0.92619 0.88704 0.88074 0.90441 0.90689 0.89921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.28 37.15 0.38 -1.01 16 2 C 0.06 0.61 6.47 37.15 0.24 0.85 16 3 O -0.37 -5.74 9.97 -35.23 -0.35 -6.09 16 4 C 0.19 2.92 3.27 -27.88 -0.09 2.83 16 5 H 0.09 1.18 7.79 -51.93 -0.40 0.78 16 6 C -0.17 -2.22 9.51 37.16 0.35 -1.87 16 7 C 0.15 2.96 7.10 -156.36 -1.11 1.85 16 8 N -0.38 -8.34 12.16 30.90 0.38 -7.97 16 9 O 0.08 1.76 11.31 18.12 0.20 1.97 16 10 C 0.20 4.37 8.10 -13.06 -0.11 4.26 16 11 C 0.22 4.89 5.96 -5.19 -0.03 4.86 16 12 N -0.53 -12.36 2.76 -167.01 -0.46 -12.82 16 13 C -0.28 -7.02 8.04 -15.06 -0.12 -7.15 16 14 H 0.07 1.76 7.23 -52.49 -0.38 1.38 16 15 C 0.03 0.68 4.97 -17.43 -0.09 0.59 16 16 N -0.88 -23.05 11.45 55.49 0.64 -22.41 16 17 Si 0.90 20.66 29.60 -169.99 -5.03 15.63 16 18 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 21 C 0.12 2.56 6.62 -67.93 -0.45 2.12 16 22 C -0.19 -3.58 9.81 -26.73 -0.26 -3.84 16 23 C -0.22 -4.23 10.09 -26.73 -0.27 -4.50 16 24 N -0.50 -10.44 11.55 -9.87 -0.11 -10.55 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.45 7.87 -51.93 -0.41 0.04 16 29 H 0.05 0.50 8.09 -51.93 -0.42 0.08 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 0.70 7.87 -51.93 -0.41 0.29 16 33 H 0.13 3.10 5.52 -51.93 -0.29 2.81 16 34 H 0.08 1.62 8.04 -51.93 -0.42 1.21 16 35 H 0.26 6.64 8.32 -40.82 -0.34 6.30 16 36 H 0.10 1.79 8.10 -51.93 -0.42 1.37 16 37 H 0.10 2.12 6.95 -51.93 -0.36 1.76 16 38 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.08 1.72 8.01 -51.93 -0.42 1.31 16 LS Contribution 341.10 15.07 5.14 5.14 Total: -1.00 -28.37 341.10 -7.17 -35.54 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -6.02 Total: 2.57 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -1.55 Total: -1.01 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: 0.44 Total: -53.75 kcal Atomic # 8 Polarization: -3.98 SS G_CDS: -0.15 Total: -4.12 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.37 -7.17 -35.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076722992.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.096 kcal (2) G-P(sol) polarization free energy of solvation -28.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds