Wall clock time and date at job start Tue Mar 31 2020 05:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47163 * 2 1 4 4 C 1.50703 * 109.47091 * 120.00183 * 2 1 3 5 5 N 1.29948 * 126.28469 * 300.02334 * 4 2 1 6 6 O 1.21303 * 110.24669 * 180.02562 * 5 4 2 7 7 C 1.33643 * 109.81437 * 0.02562 * 6 5 4 8 8 C 1.50692 * 126.55048 * 180.02562 * 7 6 5 9 9 C 1.53005 * 109.47320 * 269.97414 * 8 7 6 10 10 C 1.50692 * 109.47320 * 179.97438 * 9 8 7 11 11 O 1.21284 * 120.00283 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00293 * 180.02562 * 10 9 8 13 13 C 1.46506 * 119.99579 * 359.97438 * 12 10 9 14 14 C 1.46498 * 120.00465 * 180.02562 * 12 10 9 15 15 C 1.50705 * 109.47017 * 89.99793 * 14 12 10 16 16 H 1.08005 * 120.00137 * 359.97438 * 15 14 12 17 17 C 1.37875 * 119.99867 * 180.02562 * 15 14 12 18 18 N 1.31516 * 120.00137 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99908 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47474 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47574 * 119.99809 * 19 17 15 22 22 H 1.48501 * 109.46939 * 239.99536 * 19 17 15 23 23 N 1.31126 * 106.89467 * 0.02562 * 7 6 5 24 24 H 1.09004 * 109.46792 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47275 * 299.99918 * 1 2 3 26 26 H 1.09004 * 109.47233 * 60.00162 * 1 2 3 27 27 H 1.09000 * 109.47275 * 240.00082 * 2 1 3 28 28 H 1.08993 * 109.47313 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47163 * 300.00502 * 3 2 1 30 30 H 1.09000 * 109.46958 * 59.99888 * 3 2 1 31 31 H 1.08995 * 109.47428 * 29.97302 * 8 7 6 32 32 H 1.08999 * 109.47183 * 149.97495 * 8 7 6 33 33 H 1.09000 * 109.47216 * 300.00452 * 9 8 7 34 34 H 1.08999 * 109.46926 * 59.99925 * 9 8 7 35 35 H 1.09003 * 109.46404 * 90.00481 * 13 12 10 36 36 H 1.08994 * 109.47303 * 209.99891 * 13 12 10 37 37 H 1.08994 * 109.47030 * 330.00885 * 13 12 10 38 38 H 1.08995 * 109.47253 * 209.99669 * 14 12 10 39 39 H 1.09002 * 109.46629 * 330.00272 * 14 12 10 40 40 H 0.97002 * 120.00411 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 1.7945 -0.3749 2.4632 6 8 2.3416 -1.1476 3.2215 7 6 3.0008 -2.0772 2.5235 8 6 3.8083 -3.2180 3.0870 9 6 5.2588 -2.7705 3.2783 10 6 6.0661 -3.9111 3.8425 11 8 5.5339 -4.9771 4.0688 12 7 7.3797 -3.7466 4.0956 13 6 8.0228 -2.4590 3.8217 14 6 8.1647 -4.8555 4.6435 15 6 8.7419 -5.6688 3.5136 16 1 8.5435 -5.3879 2.4897 17 6 9.5224 -6.7719 3.7869 18 7 9.7636 -7.1143 5.0336 19 14 10.2385 -7.7795 2.3864 20 1 9.8225 -7.1894 1.0888 21 1 11.7206 -7.7747 2.4804 22 1 9.7414 -9.1759 2.4767 23 7 2.8107 -1.8070 1.2545 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 3.3910 -3.5185 4.0480 32 1 3.7762 -4.0614 2.3972 33 1 5.6761 -2.4699 2.3173 34 1 5.2909 -1.9271 3.9681 35 1 7.9593 -1.8258 4.7067 36 1 9.0697 -2.6227 3.5665 37 1 7.5176 -1.9706 2.9885 38 1 8.9741 -4.4596 5.2566 39 1 7.5216 -5.4884 5.2551 40 1 10.3131 -7.8902 5.2259 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078772426.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:25 Heat of formation + Delta-G solvation = 15.283244 kcal Electronic energy + Delta-G solvation = -21511.028524 eV Core-core repulsion = 18135.909613 eV Total energy + Delta-G solvation = -3375.118911 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.67917 -39.13996 -37.07311 -35.42579 -34.83827 -33.51888 -32.60299 -30.91438 -28.02932 -27.59092 -26.21959 -25.21078 -24.75592 -23.20819 -22.18196 -20.16535 -18.62421 -18.00223 -17.66983 -16.58150 -16.48430 -15.47368 -15.33051 -15.23478 -14.86536 -14.31897 -14.04598 -13.78859 -13.65767 -12.81376 -12.73374 -12.63281 -12.31884 -12.21662 -12.14391 -11.98590 -11.91139 -11.80622 -11.44872 -11.33759 -11.21337 -11.18815 -11.00940 -10.86728 -10.60896 -10.18094 -9.98976 -9.63599 -9.01550 -8.45751 -7.70300 -6.06452 -4.11301 1.03480 2.10779 2.70282 3.28969 3.31152 3.37210 3.39441 3.41893 3.84922 3.97841 4.43167 4.55035 4.66648 4.67353 4.82079 4.98696 5.05486 5.21330 5.21986 5.28802 5.39267 5.40459 5.45757 5.50780 5.62122 5.68111 5.74161 5.79819 5.84913 5.91329 5.95176 5.98496 6.18363 7.00172 7.40538 7.48658 7.89678 8.07255 8.20454 8.34175 8.85809 9.01395 9.54025 11.01700 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.030089 B = 0.003015 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.346683 B = 9284.669295 C = 9505.549878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.004 4.004 3 C -0.145 4.145 4 C 0.173 3.827 5 N -0.386 5.386 6 O 0.075 5.925 7 C 0.194 3.806 8 C -0.014 4.014 9 C -0.137 4.137 10 C 0.508 3.492 11 O -0.541 6.541 12 N -0.600 5.600 13 C 0.082 3.918 14 C 0.244 3.756 15 C -0.526 4.526 16 H 0.058 0.942 17 C 0.061 3.939 18 N -0.895 5.895 19 Si 0.898 3.102 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.282 1.282 23 N -0.482 5.482 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.101 0.899 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.111 0.889 32 H 0.120 0.880 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.046 0.954 36 H 0.075 0.925 37 H 0.057 0.943 38 H 0.033 0.967 39 H 0.045 0.955 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.780 16.413 -7.253 22.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.024 4.024 3 C -0.203 4.203 4 C -0.100 4.100 5 N -0.094 5.094 6 O 0.017 5.983 7 C -0.026 4.026 8 C -0.053 4.053 9 C -0.179 4.179 10 C 0.294 3.706 11 O -0.419 6.419 12 N -0.332 5.332 13 C -0.063 4.063 14 C 0.125 3.875 15 C -0.565 4.565 16 H 0.076 0.924 17 C -0.141 4.141 18 N -0.534 5.534 19 Si 0.726 3.274 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.208 1.208 23 N -0.216 5.216 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.120 0.880 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.129 0.871 32 H 0.138 0.862 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.064 0.936 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.383 16.342 -7.218 22.935 hybrid contribution 0.690 -0.644 -0.648 1.145 sum -13.692 15.698 -7.866 22.266 Atomic orbital electron populations 1.21847 0.92942 1.02594 1.02895 1.19553 0.96357 0.95391 0.91121 1.21845 1.01568 0.93973 1.02894 1.25836 0.96687 0.92905 0.94596 1.74565 1.17860 1.14105 1.02837 1.85307 1.47746 1.29912 1.35326 1.28986 0.94103 0.93697 0.85856 1.20042 0.91388 0.90009 1.03853 1.21673 0.93412 0.99275 1.03502 1.20005 0.82710 0.88561 0.79339 1.90692 1.70450 1.27756 1.53009 1.48147 1.08370 1.14016 1.62653 1.21670 0.99678 0.85412 0.99492 1.19330 0.90316 0.83388 0.94487 1.21467 1.30598 1.11319 0.93150 0.92367 1.24942 0.96304 0.97122 0.95779 1.69940 1.38686 1.26938 1.17808 0.86438 0.78528 0.80171 0.82261 1.19772 1.20977 1.20849 1.71958 1.17289 1.14128 1.18205 0.92270 0.91888 0.91087 0.88031 0.92208 0.91091 0.91889 0.87062 0.86190 0.88525 0.88848 0.93582 0.90636 0.92442 0.94907 0.93674 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.18 37.16 0.34 -0.76 16 2 C 0.00 -0.04 3.39 -91.77 -0.31 -0.35 16 3 C -0.14 -1.10 9.18 37.16 0.34 -0.76 16 4 C 0.17 2.13 6.72 -156.37 -1.05 1.08 16 5 N -0.39 -5.05 12.16 30.90 0.38 -4.68 16 6 O 0.07 0.96 11.31 18.10 0.20 1.17 16 7 C 0.19 2.45 7.77 -13.06 -0.10 2.34 16 8 C -0.01 -0.17 5.13 -27.88 -0.14 -0.31 16 9 C -0.14 -1.81 4.23 -27.88 -0.12 -1.93 16 10 C 0.51 9.74 7.67 -10.99 -0.08 9.65 16 11 O -0.54 -12.59 15.56 5.55 0.09 -12.50 16 12 N -0.60 -12.16 2.86 -182.96 -0.52 -12.68 16 13 C 0.08 1.22 10.24 59.85 0.61 1.84 16 14 C 0.24 6.23 5.16 -5.19 -0.03 6.20 16 15 C -0.53 -14.70 9.39 -34.44 -0.32 -15.02 16 16 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 19 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 N -0.48 -6.55 11.55 -9.87 -0.11 -6.66 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.11 1.28 8.10 -51.93 -0.42 0.86 16 32 H 0.12 1.58 8.10 -51.93 -0.42 1.16 16 33 H 0.10 1.20 7.40 -51.93 -0.38 0.81 16 34 H 0.09 1.02 8.11 -51.93 -0.42 0.60 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 37 H 0.06 0.70 6.44 -51.93 -0.33 0.36 16 38 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 39 H 0.05 1.29 7.42 -51.93 -0.39 0.91 16 40 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 LS Contribution 344.06 15.07 5.18 5.18 Total: -1.00 -33.24 344.06 -6.16 -39.40 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -6.13 Total: -3.88 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: -0.96 Total: 3.61 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: 0.48 Total: -49.61 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.29 Total: -11.34 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.24 -6.16 -39.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078772426.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.682 kcal (2) G-P(sol) polarization free energy of solvation -33.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds