Wall clock time and date at job start Tue Mar 31 2020 05:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46907 * 109.47032 * 2 1 4 4 C 1.46897 * 111.00172 * 199.75725 * 3 2 1 5 5 C 1.50700 * 109.47632 * 66.04212 * 4 3 2 6 6 H 1.08004 * 119.99728 * 359.97438 * 5 4 3 7 7 C 1.37868 * 120.00216 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00267 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00139 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46844 * 59.99878 * 9 7 5 11 11 H 1.48499 * 109.47432 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47162 * 300.00358 * 9 7 5 13 13 C 1.46893 * 111.00185 * 75.79800 * 3 2 1 14 14 C 1.52995 * 109.47517 * 199.64795 * 13 3 2 15 15 C 1.50704 * 109.47369 * 174.92997 * 14 13 3 16 16 O 1.21275 * 120.00087 * 359.97438 * 15 14 13 17 17 N 1.34778 * 119.99784 * 180.02562 * 15 14 13 18 18 C 1.39498 * 119.99791 * 179.72672 * 17 15 14 19 19 C 1.42027 * 126.89273 * 359.97438 * 18 17 15 20 20 C 1.35252 * 103.95413 * 179.97438 * 19 18 17 21 21 C 1.50698 * 126.69302 * 180.02562 * 20 19 18 22 22 O 1.34078 * 106.61334 * 359.97438 * 20 19 18 23 23 N 1.20924 * 111.74621 * 359.74739 * 22 20 19 24 24 H 1.09004 * 109.47136 * 174.85583 * 1 2 3 25 25 H 1.08997 * 109.47322 * 294.84960 * 1 2 3 26 26 H 1.09003 * 109.47769 * 54.85204 * 1 2 3 27 27 H 1.08996 * 109.47622 * 240.00522 * 2 1 3 28 28 H 1.09000 * 109.47429 * 119.99483 * 2 1 3 29 29 H 1.09000 * 109.47446 * 186.04620 * 4 3 2 30 30 H 1.09004 * 109.47053 * 306.04097 * 4 3 2 31 31 H 0.97000 * 120.00041 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.47203 * 79.64537 * 13 3 2 33 33 H 1.09007 * 109.47068 * 319.65174 * 13 3 2 34 34 H 1.09002 * 109.47136 * 54.92872 * 14 13 3 35 35 H 1.09002 * 109.47129 * 294.93277 * 14 13 3 36 36 H 0.97001 * 120.00401 * 359.97438 * 17 15 14 37 37 H 1.08002 * 128.02425 * 359.96188 * 19 18 17 38 38 H 1.09005 * 109.47385 * 89.99457 * 21 20 19 39 39 H 1.08996 * 109.47235 * 209.99757 * 21 20 19 40 40 H 1.09006 * 109.47455 * 329.99711 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4119 1.4512 -0.4636 5 6 3.4783 1.0475 -1.9140 6 1 2.5764 0.7691 -2.4388 7 6 4.6904 1.0335 -2.5709 8 7 5.7887 1.3719 -1.9317 9 14 4.7727 0.5323 -4.3685 10 1 3.9364 1.4544 -5.1782 11 1 6.1802 0.5993 -4.8372 12 1 4.2669 -0.8558 -4.5192 13 6 1.8779 1.9936 1.3294 14 6 1.9207 3.5174 1.2001 15 6 1.6512 4.1435 2.5442 16 8 1.4447 3.4401 3.5103 17 7 1.6386 5.4851 2.6723 18 6 1.3835 6.0647 3.9153 19 6 1.1194 5.3858 5.1345 20 6 0.9424 6.3827 6.0312 21 6 0.6328 6.2299 7.4981 22 8 1.0972 7.5334 5.3607 23 7 1.3459 7.3415 4.1930 24 1 -0.3633 -1.0236 -0.0921 25 1 -0.3634 0.4318 0.9325 26 1 -0.3635 0.5916 -0.8403 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 3.7839 2.4698 -0.3526 30 1 4.0253 0.7738 0.1306 31 1 6.6415 1.3617 -2.3938 32 1 2.6940 1.6603 1.9705 33 1 0.9260 1.6926 1.7672 34 1 1.1617 3.8432 0.4888 35 1 2.9051 3.8246 0.8470 36 1 1.8034 6.0477 1.8995 37 1 1.0709 4.3205 5.3059 38 1 1.5639 6.1817 8.0629 39 1 0.0464 7.0841 7.8366 40 1 0.0643 5.3134 7.6561 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081039340.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:23 Heat of formation + Delta-G solvation = 25.506338 kcal Electronic energy + Delta-G solvation = -21564.228554 eV Core-core repulsion = 18189.552950 eV Total energy + Delta-G solvation = -3374.675604 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.95641 -40.10914 -37.08039 -35.60808 -33.78755 -32.75620 -32.38936 -31.29052 -29.43081 -27.99030 -26.57720 -24.28881 -23.07097 -22.44783 -21.27139 -20.57510 -19.60220 -17.78851 -17.47408 -16.97734 -16.62810 -16.42780 -15.63714 -14.91414 -14.60223 -14.11030 -13.96217 -13.72678 -13.71018 -13.53520 -13.17708 -12.88377 -12.63306 -12.39653 -12.11627 -11.73598 -11.48638 -11.34878 -11.22691 -10.98206 -10.89251 -10.73808 -10.44793 -10.13958 -9.98363 -9.73961 -9.53620 -9.22221 -8.91524 -8.46850 -7.31031 -6.06278 -4.07746 1.28383 1.92050 2.49254 2.82157 3.02240 3.31044 3.35569 3.38148 4.14729 4.38669 4.56756 4.75412 4.94920 5.04692 5.06110 5.11496 5.29032 5.32925 5.38427 5.51577 5.60250 5.72627 5.84315 5.96193 6.00499 6.09534 6.22759 6.27243 6.31631 6.49591 6.70310 6.79912 7.03033 7.22930 7.33485 7.76891 7.92318 8.04593 8.16872 8.20608 8.50775 9.00120 9.56747 11.04455 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.026124 B = 0.003163 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.566773 B = 8850.875703 C = 9521.668916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.057 3.943 3 N -0.539 5.539 4 C 0.190 3.810 5 C -0.509 4.509 6 H 0.064 0.936 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.897 3.103 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.071 3.929 14 C -0.128 4.128 15 C 0.528 3.472 16 O -0.517 6.517 17 N -0.637 5.637 18 C 0.252 3.748 19 C -0.226 4.226 20 C -0.030 4.030 21 C -0.072 4.072 22 O 0.092 5.908 23 N -0.396 5.396 24 H 0.047 0.953 25 H 0.043 0.957 26 H 0.059 0.941 27 H 0.087 0.913 28 H 0.019 0.981 29 H 0.030 0.970 30 H -0.009 1.009 31 H 0.262 0.738 32 H 0.033 0.967 33 H 0.070 0.930 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.421 0.579 37 H 0.190 0.810 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.348 7.911 14.519 19.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.071 4.071 3 N -0.264 5.264 4 C 0.065 3.935 5 C -0.547 4.547 6 H 0.082 0.918 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.725 3.275 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.058 4.058 14 C -0.168 4.168 15 C 0.317 3.683 16 O -0.390 6.390 17 N -0.289 5.289 18 C 0.003 3.997 19 C -0.249 4.249 20 C -0.093 4.093 21 C -0.129 4.129 22 O 0.033 5.967 23 N -0.113 5.113 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.105 0.895 28 H 0.037 0.963 29 H 0.048 0.952 30 H 0.009 0.991 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.088 0.912 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.258 0.742 37 H 0.207 0.793 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.406 8.731 14.138 19.606 hybrid contribution 0.828 -1.081 -0.691 1.528 sum -9.578 7.649 13.446 18.195 Atomic orbital electron populations 1.21801 0.96611 1.00360 1.01394 1.21945 0.94190 0.89941 1.01010 1.62070 1.25444 1.17238 1.21643 1.19781 0.81511 0.96781 0.95401 1.21126 0.93297 1.44895 0.95404 0.91833 1.24986 0.95638 0.95554 0.98391 1.69943 0.98482 1.48636 1.36751 0.86573 0.76862 0.79122 0.84923 1.20159 1.21395 1.20275 1.21715 1.01110 0.91240 0.91772 1.21662 1.05538 0.97958 0.91657 1.21358 0.74601 0.79940 0.92424 1.90614 1.46742 1.61051 1.40600 1.42829 1.70388 1.07993 1.07686 1.20630 1.00852 0.89229 0.88991 1.22753 1.09768 1.02649 0.89736 1.24432 1.02277 0.84943 0.97667 1.20325 1.03280 1.04234 0.85083 1.84780 1.66550 1.31159 1.14227 1.74039 1.25093 1.15962 0.96159 0.93394 0.93795 0.92171 0.89513 0.96255 0.95180 0.99119 0.92844 0.94828 0.91167 0.87392 0.87611 0.74204 0.79291 0.89372 0.89858 0.88946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.96 37.15 0.37 -1.87 16 2 C 0.06 1.09 5.51 -3.82 -0.02 1.07 16 3 N -0.54 -11.08 4.36 -236.08 -1.03 -12.10 16 4 C 0.19 4.75 4.55 -4.98 -0.02 4.72 16 5 C -0.51 -13.79 8.23 -34.44 -0.28 -14.07 16 6 H 0.06 1.70 7.31 -52.48 -0.38 1.32 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.14 13.29 55.43 0.74 -25.40 16 9 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 13 C 0.07 1.25 4.16 -3.83 -0.02 1.24 16 14 C -0.13 -1.90 5.73 -27.88 -0.16 -2.06 16 15 C 0.53 7.66 7.79 -10.98 -0.09 7.58 16 16 O -0.52 -8.62 13.20 5.56 0.07 -8.55 16 17 N -0.64 -8.21 5.42 -11.43 -0.06 -8.27 16 18 C 0.25 3.53 8.18 -154.82 -1.27 2.27 16 19 C -0.23 -2.91 9.79 -39.19 -0.38 -3.29 16 20 C -0.03 -0.31 7.48 -35.37 -0.26 -0.57 16 21 C -0.07 -0.40 10.45 36.00 0.38 -0.03 16 22 O 0.09 1.14 11.19 17.07 0.19 1.33 16 23 N -0.40 -5.53 12.10 31.19 0.38 -5.16 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.04 0.64 6.90 -51.93 -0.36 0.28 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.09 1.82 6.58 -51.93 -0.34 1.48 16 28 H 0.02 0.36 8.00 -51.93 -0.42 -0.05 16 29 H 0.03 0.78 6.71 -51.93 -0.35 0.43 16 30 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 31 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.03 0.64 8.00 -51.93 -0.42 0.23 16 33 H 0.07 1.18 6.37 -51.92 -0.33 0.85 16 34 H 0.11 1.46 8.14 -51.93 -0.42 1.03 16 35 H 0.11 1.63 6.95 -51.93 -0.36 1.27 16 36 H 0.42 4.39 8.82 -40.82 -0.36 4.03 16 37 H 0.19 2.52 6.22 -52.49 -0.33 2.19 16 38 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 334.83 15.07 5.05 5.05 Total: -1.00 -31.74 334.83 -7.28 -39.01 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -5.73 Total: 1.49 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -1.85 Total: -3.58 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: 0.02 Total: -50.94 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: 0.26 Total: -7.22 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.74 -7.28 -39.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081039340.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.519 kcal (2) G-P(sol) polarization free energy of solvation -31.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds