Wall clock time and date at job start Tue Mar 31 2020 05:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46499 * 119.99440 * 2 1 4 4 C 1.50703 * 109.46847 * 269.99581 * 3 2 1 5 5 H 1.07997 * 120.00130 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99717 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00142 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99872 * 180.02562 * 6 4 3 9 9 H 1.48493 * 109.47263 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47097 * 119.99944 * 8 6 4 11 11 H 1.48502 * 109.47067 * 239.99931 * 8 6 4 12 12 C 1.34767 * 119.99882 * 179.97438 * 2 1 3 13 13 O 1.21577 * 119.99768 * 179.97438 * 12 2 1 14 14 N 1.34780 * 120.00355 * 0.02562 * 12 2 1 15 15 C 1.39491 * 119.99792 * 179.97438 * 14 12 2 16 16 C 1.42021 * 126.89561 * 359.97438 * 15 14 12 17 17 C 1.35245 * 103.95620 * 179.97438 * 16 15 14 18 18 C 1.50705 * 126.69608 * 180.26378 * 17 16 15 19 19 C 1.53001 * 109.47042 * 59.70623 * 18 17 16 20 20 C 1.53001 * 109.47105 * 179.70532 * 18 17 16 21 21 C 1.53003 * 109.46726 * 299.70484 * 18 17 16 22 22 O 1.34094 * 106.60899 * 359.97438 * 17 16 15 23 23 N 1.20911 * 111.74506 * 0.02562 * 22 17 16 24 24 H 1.09003 * 109.47193 * 269.99815 * 1 2 3 25 25 H 1.08998 * 109.47350 * 30.00341 * 1 2 3 26 26 H 1.09001 * 109.47134 * 149.99949 * 1 2 3 27 27 H 1.08994 * 109.47571 * 30.00426 * 3 2 1 28 28 H 1.09007 * 109.46746 * 150.00062 * 3 2 1 29 29 H 0.97002 * 119.99800 * 179.97438 * 7 6 4 30 30 H 0.96994 * 119.99562 * 0.02562 * 14 12 2 31 31 H 1.07995 * 128.02620 * 359.97438 * 16 15 14 32 32 H 1.09002 * 109.46951 * 60.00169 * 19 18 17 33 33 H 1.08998 * 109.46779 * 180.02562 * 19 18 17 34 34 H 1.08999 * 109.46942 * 300.00236 * 19 18 17 35 35 H 1.09001 * 109.46895 * 59.99766 * 20 18 17 36 36 H 1.08998 * 109.46822 * 179.97438 * 20 18 17 37 37 H 1.09002 * 109.47428 * 300.00161 * 20 18 17 38 38 H 1.08999 * 109.47103 * 59.99858 * 21 18 17 39 39 H 1.09006 * 109.46659 * 179.97438 * 21 18 17 40 40 H 1.09001 * 109.47276 * 299.99681 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0974 1.0961 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5548 3.6172 -0.6732 8 14 3.4375 3.4170 -3.4340 9 1 2.8597 2.4170 -4.3673 10 1 2.8003 4.7381 -3.6667 11 1 4.9000 3.5247 -3.6680 12 6 2.1389 -1.1671 0.0005 13 8 3.3546 -1.1671 0.0001 14 7 1.4650 -2.3344 0.0005 15 6 2.1626 -3.5424 0.0005 16 6 3.5725 -3.7128 0.0000 17 6 3.7388 -5.0549 0.0008 18 6 5.0488 -5.8000 0.0063 19 6 5.8467 -5.4196 1.2551 20 6 4.7789 -7.3060 0.0128 21 6 5.8506 -5.4309 -1.2434 22 8 2.5108 -5.5934 0.0023 23 7 1.6495 -4.7447 0.0020 24 1 -0.3634 0.0000 1.0277 25 1 -0.3634 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6084 2.0284 0.5139 28 1 3.1499 1.1385 0.5139 29 1 4.0322 4.4428 -0.8505 30 1 0.4951 -2.3344 -0.0002 31 1 4.3350 -2.9480 -0.0008 32 1 5.2754 -5.6825 2.1454 33 1 6.7943 -5.9581 1.2588 34 1 6.0389 -4.3467 1.2505 35 1 4.2104 -7.5771 -0.8769 36 1 5.7264 -7.8449 0.0163 37 1 4.2076 -7.5690 0.9030 38 1 6.0428 -4.3580 -1.2480 39 1 6.7983 -5.9695 -1.2392 40 1 5.2822 -5.7020 -2.1331 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085582765.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:12 Heat of formation + Delta-G solvation = 33.365775 kcal Electronic energy + Delta-G solvation = -22329.656902 eV Core-core repulsion = 18955.322109 eV Total energy + Delta-G solvation = -3374.334794 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.61102 -39.78121 -37.35360 -35.62031 -34.76967 -32.77253 -31.65626 -30.50577 -27.85958 -27.45767 -27.41594 -25.98482 -23.69900 -23.03342 -22.09180 -19.98593 -19.54413 -17.37493 -17.27661 -16.93144 -16.60162 -16.27099 -15.00964 -14.87841 -14.60501 -14.20825 -14.08561 -13.88945 -13.39636 -13.04269 -13.01590 -12.49550 -12.46105 -12.25896 -12.00383 -11.82448 -11.54653 -11.37077 -11.25913 -11.21266 -11.12416 -10.92652 -10.86051 -10.64988 -10.19876 -9.69570 -9.45092 -9.17981 -8.52912 -8.48229 -7.75744 -6.09210 -4.14095 1.66620 2.51482 2.74062 3.24818 3.27251 3.35075 3.39632 3.82121 4.21744 4.39260 4.47079 4.74627 4.75071 4.89063 5.18621 5.25296 5.31754 5.43250 5.46188 5.47425 5.61488 5.62284 5.72585 5.72985 5.78345 5.85909 5.98681 6.06696 6.13418 6.14760 6.33485 6.60775 6.79874 7.23223 7.38514 7.51969 7.87738 8.16223 8.35622 8.60789 8.85676 9.06671 9.51352 10.98770 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020886 B = 0.004188 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.258648 B = 6683.432932 C = 7415.808946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.606 5.606 3 C 0.259 3.741 4 C -0.529 4.529 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.705 3.295 13 O -0.562 6.562 14 N -0.651 5.651 15 C 0.278 3.722 16 C -0.212 4.212 17 C -0.024 4.024 18 C 0.019 3.981 19 C -0.141 4.141 20 C -0.145 4.145 21 C -0.142 4.142 22 O 0.089 5.911 23 N -0.409 5.409 24 H 0.048 0.952 25 H 0.082 0.918 26 H 0.051 0.949 27 H 0.037 0.963 28 H 0.047 0.953 29 H 0.263 0.737 30 H 0.409 0.591 31 H 0.191 0.809 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.248 -17.713 2.630 17.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.341 5.341 3 C 0.141 3.859 4 C -0.568 4.568 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.406 3.594 13 O -0.437 6.437 14 N -0.308 5.308 15 C 0.028 3.972 16 C -0.235 4.235 17 C -0.088 4.088 18 C 0.017 3.983 19 C -0.199 4.199 20 C -0.202 4.202 21 C -0.199 4.199 22 O 0.032 5.968 23 N -0.129 5.129 24 H 0.067 0.933 25 H 0.101 0.899 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.246 0.754 31 H 0.208 0.792 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.478 -17.912 2.679 18.117 hybrid contribution 0.056 1.057 -1.022 1.471 sum -0.422 -16.855 1.657 16.941 Atomic orbital electron populations 1.21662 0.81336 1.02682 1.00716 1.47484 1.05945 1.05937 1.74752 1.19322 0.92435 0.76497 0.97695 1.21481 1.36634 1.06358 0.92294 0.92363 1.24921 0.95267 0.96312 0.97497 1.69939 1.38283 1.14381 1.30681 0.86433 0.78124 0.78312 0.84499 1.19837 1.20920 1.20815 1.15695 0.85414 0.79605 0.78678 1.90827 1.11196 1.85135 1.56534 1.41950 1.09866 1.01714 1.77284 1.20257 0.90557 0.86133 1.00273 1.22718 0.95435 0.95891 1.09461 1.24274 0.88361 0.92975 1.03189 1.19103 0.86856 0.94631 0.97677 1.21939 0.99449 1.02720 0.95774 1.21886 1.02182 0.93244 1.02903 1.21944 0.99413 1.02801 0.95785 1.84737 1.11507 1.30966 1.69638 1.73967 1.13396 0.97291 1.28199 0.93310 0.89905 0.93060 0.94472 0.93482 0.92691 0.75381 0.79181 0.92139 0.91338 0.91460 0.91909 0.91639 0.91920 0.91421 0.91344 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 10.20 59.85 0.61 1.85 16 2 N -0.61 -12.74 2.86 -188.74 -0.54 -13.28 16 3 C 0.26 6.63 5.16 -5.19 -0.03 6.60 16 4 C -0.53 -14.75 9.39 -34.44 -0.32 -15.08 16 5 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 8 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 12 C 0.71 15.08 8.24 -86.92 -0.72 14.36 16 13 O -0.56 -13.85 13.20 5.30 0.07 -13.78 16 14 N -0.65 -11.52 5.29 -15.83 -0.08 -11.60 16 15 C 0.28 4.97 8.17 -154.83 -1.27 3.70 16 16 C -0.21 -3.61 9.27 -39.20 -0.36 -3.98 16 17 C -0.02 -0.34 5.76 -35.37 -0.20 -0.54 16 18 C 0.02 0.19 0.94 -155.66 -0.15 0.05 16 19 C -0.14 -1.33 8.36 37.16 0.31 -1.02 16 20 C -0.14 -1.21 8.08 37.16 0.30 -0.91 16 21 C -0.14 -1.38 8.36 37.16 0.31 -1.07 16 22 O 0.09 1.34 10.66 17.04 0.18 1.52 16 23 N -0.41 -6.87 12.10 31.19 0.38 -6.49 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 26 H 0.05 0.65 6.36 -51.93 -0.33 0.32 16 27 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 28 H 0.05 1.35 7.42 -51.93 -0.39 0.96 16 29 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.41 5.99 6.55 -40.82 -0.27 5.72 16 31 H 0.19 3.56 6.22 -52.49 -0.33 3.23 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.71 8.03 -51.93 -0.42 0.29 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.74 8.04 -51.93 -0.42 0.33 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 335.67 15.07 5.06 5.06 Total: -1.00 -32.39 335.67 -6.74 -39.13 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -5.91 Total: 2.55 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: -1.61 Total: 5.62 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: 0.49 Total: -56.71 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.25 Total: -12.25 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.39 -6.74 -39.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085582765.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.497 kcal (2) G-P(sol) polarization free energy of solvation -32.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds