Wall clock time and date at job start Tue Mar 31 2020 05:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47067 * 2 1 4 4 O 1.42898 * 109.47301 * 120.00258 * 2 1 3 5 5 C 1.42898 * 114.00461 * 89.99559 * 4 2 1 6 6 C 1.52996 * 109.47505 * 180.02562 * 5 4 2 7 7 C 1.50696 * 109.47220 * 180.02562 * 6 5 4 8 8 O 1.21290 * 120.00012 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99736 * 179.97438 * 7 6 5 10 10 C 1.40159 * 119.99983 * 179.97438 * 9 7 6 11 11 C 1.40409 * 125.97033 * 0.02562 * 10 9 7 12 12 C 1.35241 * 107.86602 * 179.73843 * 11 10 9 13 13 N 1.34966 * 107.86079 * 0.39163 * 12 11 10 14 14 C 1.46500 * 125.97782 * 179.87198 * 13 12 11 15 15 C 1.50706 * 109.47299 * 124.71059 * 14 13 12 16 16 H 1.07998 * 119.99503 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00434 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99826 * 359.72891 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47364 * 179.72558 * 19 17 15 21 21 H 1.48508 * 109.46883 * 299.72681 * 19 17 15 22 22 H 1.48497 * 109.46870 * 59.72491 * 19 17 15 23 23 N 1.31219 * 125.97718 * 179.97438 * 10 9 7 24 24 H 1.09006 * 109.47347 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47381 * 300.00120 * 1 2 3 26 26 H 1.08997 * 109.47125 * 60.00240 * 1 2 3 27 27 H 1.09005 * 109.46897 * 239.99999 * 2 1 3 28 28 H 1.09003 * 109.47424 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47309 * 299.99917 * 3 2 1 30 30 H 1.08994 * 109.47118 * 59.99719 * 3 2 1 31 31 H 1.09002 * 109.46423 * 60.00108 * 5 4 2 32 32 H 1.09003 * 109.47125 * 300.00741 * 5 4 2 33 33 H 1.09001 * 109.46879 * 60.00147 * 6 5 4 34 34 H 1.09006 * 109.47056 * 300.00724 * 6 5 4 35 35 H 0.97003 * 120.00166 * 0.02562 * 9 7 6 36 36 H 1.08002 * 126.06850 * 0.02562 * 11 10 9 37 37 H 1.08003 * 126.07024 * 180.26845 * 12 11 10 38 38 H 1.09004 * 109.47078 * 4.71821 * 14 13 12 39 39 H 1.08993 * 109.47364 * 244.71592 * 14 13 12 40 40 H 0.97000 * 120.00236 * 0.27947 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2001 -2.0782 0.9886 6 6 2.7079 -2.6927 2.2945 7 6 2.9128 -4.1738 2.1064 8 8 2.6763 -4.6873 1.0333 9 7 3.3597 -4.9276 3.1304 10 6 3.5497 -6.3052 2.9557 11 6 3.3158 -7.0267 1.7741 12 6 3.6235 -8.3221 2.0111 13 7 4.0284 -8.4232 3.2947 14 6 4.4529 -9.6527 3.9689 15 6 5.8303 -9.4579 4.5486 16 1 6.3384 -8.5127 4.4272 17 6 6.4417 -10.4862 5.2337 18 7 5.8207 -11.6355 5.3861 19 14 8.1487 -10.2446 5.9528 20 1 8.5766 -11.4888 6.6414 21 1 9.1053 -9.9286 4.8617 22 1 8.1214 -9.1241 6.9270 23 7 3.9782 -7.1460 3.8675 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 2.9319 -2.2467 0.1986 32 1 1.2538 -2.5434 0.7124 33 1 1.9757 -2.5242 3.0842 34 1 3.6541 -2.2275 2.5711 35 1 3.5491 -4.5169 3.9885 36 1 2.9585 -6.6187 0.8401 37 1 3.5552 -9.1323 1.3002 38 1 4.4736 -10.4724 3.2507 39 1 3.7518 -9.8887 4.7694 40 1 4.9342 -11.7610 5.0130 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117711981.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:29 Heat of formation + Delta-G solvation = -16.322725 kcal Electronic energy + Delta-G solvation = -20987.854482 eV Core-core repulsion = 17611.365033 eV Total energy + Delta-G solvation = -3376.489449 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.80832 -39.53835 -38.50024 -34.92028 -33.74965 -33.58502 -31.45998 -30.48045 -29.41715 -27.59084 -26.38968 -24.42566 -22.93310 -21.66486 -21.39146 -20.33403 -19.60511 -17.50673 -17.20923 -16.80307 -16.44248 -16.12510 -15.40705 -15.21907 -14.86344 -14.26393 -13.99027 -13.81280 -13.72585 -13.17857 -13.13910 -12.76552 -12.59540 -12.46886 -12.31118 -12.08642 -11.84798 -11.73251 -11.46040 -11.18187 -10.99084 -10.83006 -10.50335 -10.17262 -10.10398 -9.83875 -9.68739 -9.02304 -8.59839 -8.24479 -7.56455 -6.59831 -4.33988 2.21715 2.55543 2.81444 3.35493 3.37122 3.38631 3.57623 3.61784 3.87997 4.39599 4.46825 4.57262 4.67053 4.79544 4.82966 4.92874 5.13901 5.20877 5.24007 5.32745 5.43469 5.45260 5.50069 5.55820 5.59951 5.68550 5.82114 5.87437 6.15220 6.37228 6.47337 6.56125 6.72554 6.94014 7.30107 7.43016 7.67577 7.80225 8.14424 8.32085 8.51095 8.59853 9.34200 10.77728 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.039863 B = 0.002559 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.243765 B =10940.065862 C =11401.912489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.082 3.918 3 C -0.150 4.150 4 O -0.386 6.386 5 C 0.078 3.922 6 C -0.135 4.135 7 C 0.524 3.476 8 O -0.521 6.521 9 N -0.629 5.629 10 C 0.257 3.743 11 C -0.285 4.285 12 C 0.050 3.950 13 N -0.317 5.317 14 C 0.249 3.751 15 C -0.608 4.608 16 H 0.063 0.937 17 C 0.022 3.978 18 N -0.904 5.904 19 Si 1.077 2.923 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.285 1.285 23 N -0.301 5.301 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.413 0.587 36 H 0.161 0.839 37 H 0.168 0.832 38 H 0.046 0.954 39 H 0.035 0.965 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.682 21.217 -9.510 24.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.024 3.976 3 C -0.207 4.207 4 O -0.306 6.306 5 C 0.001 3.999 6 C -0.175 4.175 7 C 0.310 3.690 8 O -0.395 6.395 9 N -0.277 5.277 10 C 0.004 3.996 11 C -0.316 4.316 12 C -0.099 4.099 13 N -0.099 5.099 14 C 0.131 3.869 15 C -0.646 4.646 16 H 0.081 0.919 17 C -0.182 4.182 18 N -0.540 5.540 19 Si 0.904 3.096 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.211 1.211 23 N -0.132 5.132 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.248 0.752 36 H 0.179 0.821 37 H 0.185 0.815 38 H 0.064 0.936 39 H 0.053 0.947 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.205 19.940 -7.985 22.655 hybrid contribution -1.459 0.811 -1.432 2.200 sum -8.664 20.750 -9.418 24.379 Atomic orbital electron populations 1.22310 0.95987 1.02551 1.02536 1.22070 0.93657 0.93688 0.88147 1.21867 1.01862 0.94487 1.02487 1.87840 1.86752 1.20054 1.35967 1.22141 1.00663 0.80924 0.96170 1.21415 1.04960 0.90855 1.00246 1.20388 0.76596 0.88529 0.83490 1.90653 1.49435 1.73724 1.25705 1.42461 1.65210 1.04532 1.15508 1.19125 1.01899 0.84417 0.94161 1.21533 1.17790 0.91930 1.00384 1.22574 1.00501 0.98650 0.88201 1.48800 1.46799 1.06431 1.07830 1.19771 0.97168 0.76976 0.93003 1.22095 1.00440 1.02666 1.39425 0.91855 1.25936 1.05404 0.92155 0.94727 1.70854 1.15177 1.24688 1.43233 0.83414 0.73761 0.75990 0.76437 1.20509 1.21232 1.21121 1.77355 1.25887 0.89200 1.20732 0.92310 0.91767 0.91677 0.92034 0.91944 0.91282 0.91781 0.92208 0.92282 0.87637 0.87590 0.75161 0.82144 0.81467 0.93594 0.94737 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.22 9.53 37.16 0.35 -0.86 16 2 C 0.08 0.64 3.34 -26.73 -0.09 0.55 16 3 C -0.15 -0.95 9.56 37.16 0.36 -0.60 16 4 O -0.39 -3.80 9.99 -35.23 -0.35 -4.15 16 5 C 0.08 0.77 5.04 37.16 0.19 0.96 16 6 C -0.13 -1.25 6.07 -27.89 -0.17 -1.42 16 7 C 0.52 7.10 7.80 -10.99 -0.09 7.01 16 8 O -0.52 -8.65 13.11 5.55 0.07 -8.58 16 9 N -0.63 -9.44 5.45 -11.13 -0.06 -9.50 16 10 C 0.26 5.13 8.11 -154.39 -1.25 3.88 16 11 C -0.29 -5.62 9.61 -39.83 -0.38 -6.01 16 12 C 0.05 1.01 11.44 -17.24 -0.20 0.81 16 13 N -0.32 -7.42 3.67 -62.56 -0.23 -7.65 16 14 C 0.25 6.30 5.57 -5.19 -0.03 6.27 16 15 C -0.61 -17.11 9.24 -34.44 -0.32 -17.43 16 16 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 17 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 18 N -0.90 -26.30 13.65 55.43 0.76 -25.54 16 19 Si 1.08 24.89 29.90 -169.99 -5.08 19.81 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 N -0.30 -6.97 12.42 31.44 0.39 -6.57 16 24 H 0.06 0.43 7.87 -51.93 -0.41 0.03 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.46 7.79 -51.93 -0.40 0.05 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.61 8.04 -51.93 -0.42 0.20 16 32 H 0.06 0.60 7.83 -51.93 -0.41 0.20 16 33 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.41 4.96 8.82 -40.82 -0.36 4.60 16 36 H 0.16 3.04 5.92 -52.49 -0.31 2.73 16 37 H 0.17 2.72 8.06 -52.48 -0.42 2.30 16 38 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 39 H 0.03 0.91 8.00 -51.93 -0.42 0.49 16 40 H 0.27 7.59 7.22 -40.82 -0.29 7.30 16 LS Contribution 342.56 15.07 5.16 5.16 Total: -1.00 -33.46 342.56 -7.08 -40.55 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -6.02 Total: 2.76 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -1.72 Total: -6.29 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: 0.86 Total: -49.27 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -0.28 Total: -12.72 kcal Atomic # 14 Polarization: 24.89 SS G_CDS: -5.08 Total: 19.81 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.46 -7.08 -40.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117711981.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.225 kcal (2) G-P(sol) polarization free energy of solvation -33.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds