Wall clock time and date at job start Tue Mar 31 2020 06:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46899 * 110.99744 * 2 1 4 4 C 1.50705 * 109.47034 * 66.04971 * 3 2 1 5 5 H 1.07994 * 119.99772 * 359.97438 * 4 3 2 6 6 C 1.37874 * 119.99856 * 179.97438 * 4 3 2 7 7 N 1.31513 * 119.99799 * 179.97438 * 6 4 3 8 8 Si 1.86803 * 120.00092 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47101 * 89.99963 * 8 6 4 10 10 H 1.48503 * 109.46925 * 210.00019 * 8 6 4 11 11 H 1.48500 * 109.47003 * 329.99761 * 8 6 4 12 12 C 1.46902 * 111.00194 * 236.05028 * 2 1 3 13 13 C 1.50704 * 109.47072 * 293.95474 * 12 2 1 14 14 N 1.29951 * 126.28975 * 89.97033 * 13 12 2 15 15 O 1.21297 * 110.24858 * 180.02562 * 14 13 12 16 16 C 1.33637 * 109.81504 * 359.97438 * 15 14 13 17 17 C 1.50699 * 126.55190 * 179.97438 * 16 15 14 18 18 C 1.53175 * 109.54351 * 59.58724 * 17 16 15 19 19 C 1.53094 * 109.16661 * 183.15290 * 18 17 16 20 20 O 1.42898 * 109.41211 * 57.60371 * 19 18 17 21 21 C 1.42897 * 114.10001 * 298.84343 * 20 19 18 22 22 C 1.53089 * 109.41656 * 61.16248 * 21 20 19 23 23 N 1.31130 * 106.89679 * 0.23243 * 16 15 14 24 24 H 1.09004 * 109.47410 * 183.95423 * 1 2 3 25 25 H 1.08996 * 109.47196 * 303.94952 * 1 2 3 26 26 H 1.08998 * 109.47648 * 63.95209 * 1 2 3 27 27 H 1.09002 * 109.46891 * 186.04701 * 3 2 1 28 28 H 1.09000 * 109.47395 * 306.04885 * 3 2 1 29 29 H 0.97001 * 119.99918 * 180.02562 * 7 6 4 30 30 H 1.08990 * 109.47464 * 173.95090 * 12 2 1 31 31 H 1.09001 * 109.46960 * 53.94986 * 12 2 1 32 32 H 1.09004 * 109.61503 * 179.80281 * 17 16 15 33 33 H 1.09004 * 109.52259 * 303.05556 * 18 17 16 34 34 H 1.09006 * 109.52330 * 63.24389 * 18 17 16 35 35 H 1.09006 * 109.47665 * 297.62062 * 19 18 17 36 36 H 1.08993 * 109.47955 * 177.58818 * 19 18 17 37 37 H 1.09002 * 109.48425 * 301.17758 * 21 20 19 38 38 H 1.09002 * 109.48369 * 181.14801 * 21 20 19 39 39 H 1.08997 * 109.52675 * 182.48845 * 22 21 20 40 40 H 1.08994 * 109.57561 * 62.32552 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.6368 2.0471 1.2985 5 1 1.0739 1.5114 2.0485 6 6 2.0275 3.3491 1.5290 7 7 1.7143 3.9388 2.6619 8 14 3.0006 4.2759 0.2314 9 1 2.0639 4.9804 -0.6804 10 1 3.8878 5.2668 0.8919 11 1 3.8237 3.3171 -0.5487 12 6 1.9954 -0.7659 -1.1376 13 6 1.6369 -2.2204 -0.9730 14 7 0.5601 -2.8014 -1.4106 15 8 0.5685 -3.9780 -1.1159 16 6 1.6857 -4.2683 -0.4424 17 6 2.0800 -5.6165 0.1032 18 6 2.1723 -6.6267 -1.0446 19 6 2.4960 -8.0094 -0.4724 20 8 1.4911 -8.3788 0.4740 21 6 1.3914 -7.4964 1.5936 22 6 1.0234 -6.0932 1.1045 23 7 2.3705 -3.1545 -0.3421 24 1 -0.3634 -1.0252 0.0709 25 1 -0.3633 0.5739 0.8524 26 1 -0.3634 0.4512 -0.9232 27 1 3.0796 1.3444 -0.1083 28 1 1.5610 1.9274 -0.8309 29 1 1.9888 4.8550 2.8239 30 1 3.0796 -0.6610 -1.1757 31 1 1.5611 -0.3871 -2.0628 32 1 3.0467 -5.5413 0.6012 33 1 1.2200 -6.6652 -1.5735 34 1 2.9608 -6.3240 -1.7337 35 1 3.4673 -7.9801 0.0213 36 1 2.5206 -8.7404 -1.2805 37 1 2.3483 -7.4605 2.1145 38 1 0.6205 -7.8581 2.2740 39 1 0.9902 -5.4090 1.9523 40 1 0.0477 -6.1198 0.6194 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177188917.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:27 Heat of formation + Delta-G solvation = 26.400637 kcal Electronic energy + Delta-G solvation = -21952.523038 eV Core-core repulsion = 18577.886213 eV Total energy + Delta-G solvation = -3374.636825 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -45.49960 -39.74678 -37.23708 -35.68282 -34.82722 -32.56047 -31.57367 -31.54256 -28.56904 -27.38754 -26.23750 -24.54682 -24.02351 -23.07971 -21.91470 -20.55132 -19.95675 -18.01885 -17.55623 -16.83875 -16.50132 -16.38376 -15.65137 -15.18947 -14.95898 -14.59788 -14.38570 -14.31021 -13.93055 -13.40986 -12.85905 -12.72294 -12.51148 -12.28827 -11.90792 -11.80324 -11.75775 -11.71834 -11.45205 -11.17098 -11.09492 -10.84483 -10.78921 -10.72307 -10.37156 -10.04047 -9.95480 -9.74136 -9.36150 -8.61601 -7.57245 -6.08597 -4.06773 1.21089 2.34687 2.77246 3.25944 3.33774 3.34945 3.45655 3.61649 4.10675 4.25292 4.31358 4.38556 4.51306 4.60835 4.78830 4.85176 4.92052 5.08403 5.15565 5.23687 5.27276 5.28081 5.35211 5.53599 5.57479 5.62066 5.73535 5.80675 5.91039 6.01394 6.11740 6.19990 6.61302 6.74910 6.77251 6.87794 7.48234 7.74302 7.87637 8.30526 8.58746 8.99212 9.51823 11.04431 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.034933 B = 0.003187 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.337043 B = 8783.872667 C = 8994.935186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.524 5.524 3 C 0.164 3.836 4 C -0.511 4.511 5 H 0.081 0.919 6 C 0.069 3.931 7 N -0.899 5.899 8 Si 0.876 3.124 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.137 3.863 13 C 0.196 3.804 14 N -0.384 5.384 15 O 0.076 5.924 16 C 0.170 3.830 17 C 0.009 3.991 18 C -0.154 4.154 19 C 0.064 3.936 20 O -0.381 6.381 21 C 0.064 3.936 22 C -0.155 4.155 23 N -0.461 5.461 24 H 0.044 0.956 25 H 0.085 0.915 26 H 0.017 0.983 27 H 0.033 0.967 28 H -0.012 1.012 29 H 0.264 0.736 30 H 0.101 0.899 31 H 0.054 0.946 32 H 0.117 0.883 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.056 0.944 36 H 0.100 0.900 37 H 0.057 0.943 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.292 -23.792 -7.175 24.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.249 5.249 3 C 0.038 3.962 4 C -0.549 4.549 5 H 0.099 0.901 6 C -0.132 4.132 7 N -0.537 5.537 8 Si 0.703 3.297 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.191 1.191 12 C 0.007 3.993 13 C -0.077 4.077 14 N -0.092 5.092 15 O 0.017 5.983 16 C -0.051 4.051 17 C -0.011 4.011 18 C -0.192 4.192 19 C -0.013 4.013 20 O -0.300 6.300 21 C -0.013 4.013 22 C -0.194 4.194 23 N -0.194 5.194 24 H 0.063 0.937 25 H 0.103 0.897 26 H 0.035 0.965 27 H 0.051 0.949 28 H 0.006 0.994 29 H 0.074 0.926 30 H 0.119 0.881 31 H 0.072 0.928 32 H 0.135 0.865 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.118 0.882 37 H 0.075 0.925 38 H 0.120 0.880 39 H 0.105 0.895 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.075 -23.276 -6.989 24.327 hybrid contribution 0.388 1.319 -1.256 1.862 sum 1.463 -21.957 -8.245 23.500 Atomic orbital electron populations 1.22299 0.87685 1.00067 1.01277 1.61936 1.07921 1.16824 1.38201 1.20235 0.95442 0.82939 0.97539 1.20971 1.35845 0.97279 1.00789 0.90094 1.24883 0.95700 0.97269 0.95384 1.69888 1.46691 1.13273 1.23887 0.86855 0.80632 0.80109 0.82115 1.20286 1.21028 1.19104 1.20387 1.01791 0.82728 0.94401 1.25870 0.87364 0.99677 0.94826 1.74668 1.21848 0.90683 1.21976 1.85243 1.38473 1.20797 1.53769 1.28577 0.84005 0.98031 0.94483 1.19814 1.01243 0.83739 0.96332 1.22338 1.04435 0.95024 0.97440 1.22572 0.91137 0.95102 0.92484 1.87965 1.57429 1.50612 1.33990 1.22587 1.01920 0.88407 0.88356 1.22342 0.99198 0.98267 0.99569 1.71917 1.29727 0.98215 1.19501 0.93724 0.89671 0.96466 0.94918 0.99385 0.92565 0.88083 0.92793 0.86537 0.89763 0.89864 0.92561 0.88161 0.92493 0.88027 0.89533 0.89750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 9.18 60.06 0.55 1.28 16 2 N -0.52 -11.54 4.74 -245.83 -1.17 -12.71 16 3 C 0.16 4.01 3.79 -4.97 -0.02 4.00 16 4 C -0.51 -14.62 9.01 -34.44 -0.31 -14.93 16 5 H 0.08 2.53 7.37 -52.49 -0.39 2.15 16 6 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 7 N -0.90 -27.56 13.96 55.43 0.77 -26.78 16 8 Si 0.88 21.38 27.47 -169.99 -4.67 16.71 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 12 C 0.14 2.53 5.59 -4.97 -0.03 2.50 16 13 C 0.20 3.47 6.84 -156.37 -1.07 2.40 16 14 N -0.38 -6.51 11.44 30.90 0.35 -6.16 16 15 O 0.08 1.10 11.31 18.12 0.20 1.30 16 16 C 0.17 2.24 7.03 -13.06 -0.09 2.15 16 17 C 0.01 0.08 2.75 -91.59 -0.25 -0.17 16 18 C -0.15 -1.06 5.40 -26.59 -0.14 -1.21 16 19 C 0.06 0.38 6.84 37.21 0.25 0.64 16 20 O -0.38 -3.06 10.76 -35.23 -0.38 -3.44 16 21 C 0.06 0.42 6.84 37.20 0.25 0.67 16 22 C -0.16 -1.21 5.40 -26.59 -0.14 -1.35 16 23 N -0.46 -7.62 11.55 -9.87 -0.11 -7.74 16 24 H 0.04 0.88 6.74 -51.93 -0.35 0.53 16 25 H 0.08 1.92 6.76 -51.93 -0.35 1.56 16 26 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.03 0.80 6.99 -51.93 -0.36 0.43 16 28 H -0.01 -0.28 7.55 -51.93 -0.39 -0.67 16 29 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 30 H 0.10 1.76 7.93 -51.93 -0.41 1.35 16 31 H 0.05 0.93 8.12 -51.93 -0.42 0.51 16 32 H 0.12 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 327.33 15.07 4.93 4.93 Total: -1.00 -33.04 327.33 -7.23 -40.27 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -6.07 Total: -4.28 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -1.09 Total: -2.11 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: -0.15 Total: -53.39 kcal Atomic # 8 Polarization: -1.96 SS G_CDS: -0.17 Total: -2.13 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.04 -7.23 -40.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177188917.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.673 kcal (2) G-P(sol) polarization free energy of solvation -33.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds